Experiment set14H37 for Pseudomonas stutzeri RCH2

Compare to:

Lactate Nitrate anaeroibic, no iron sample1

200 most important genes:

  gene name fitness t score description  
Psest_3226 -3.7 -3.0 Predicted membrane protein compare
Psest_3301 -3.0 -5.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_0309 -2.9 -2.0 RND family efflux transporter, MFP subunit compare
Psest_1013 -2.7 -4.0 phosphoribosylamine--glycine ligase compare
Psest_3720 -2.5 -18.4 penicillin-binding protein, 1A family compare
Psest_2579 -2.4 -8.2 amidophosphoribosyltransferase compare
Psest_1473 -2.4 -10.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2304 -2.4 -3.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2234 -2.3 -14.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0508 -2.1 -9.4 gamma-glutamyl phosphate reductase compare
Psest_3159 -2.1 -7.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3384 -2.1 -10.5 glutamate 5-kinase compare
Psest_3092 -2.0 -2.5 ribonuclease III, bacterial compare
Psest_2651 -1.9 -2.7 DNA topoisomerase I, bacterial compare
Psest_1656 -1.8 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3168 -1.8 -3.5 Molybdopterin converting factor, large subunit compare
Psest_1657 -1.8 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0998 -1.7 -2.5 poly(A) polymerase compare
Psest_0718 -1.6 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_1474 -1.6 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_1655 -1.6 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1837 -1.5 -10.0 Endoglucanase compare
Psest_0958 -1.5 -5.3 Oligoketide cyclase/lipid transport protein compare
Psest_2018 -1.5 -2.7 Uncharacterized conserved protein compare
Psest_3490 -1.5 -5.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0212 -1.5 -2.8 exodeoxyribonuclease V, gamma subunit compare
Psest_0310 -1.5 -2.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0814 -1.5 -3.7 MoxR-like ATPases compare
Psest_2988 -1.5 -7.6 aspartate kinase, monofunctional class compare
Psest_3170 -1.4 -6.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3536 -1.4 -2.6 hypothetical protein compare
Psest_3484 -1.4 -4.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0846 -1.4 -3.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3480 -1.3 -3.4 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_4142 -1.3 -1.9 hypothetical protein compare
Psest_1115 -1.3 -4.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3485 -1.3 -9.6 nitrate reductase, beta subunit compare
Psest_3129 -1.2 -1.3 tyrosine recombinase XerD compare
Psest_0063 -1.2 -2.4 tryptophan synthase, beta subunit compare
Psest_2104 -1.2 -0.8 IscR-regulated protein YhgI compare
Psest_0708 -1.2 -2.0 outer membrane assembly lipoprotein YfiO compare
Psest_1661 -1.2 -1.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1822 -1.2 -6.5 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3647 -1.2 -3.8 Indole-3-glycerol phosphate synthase compare
Psest_2786 -1.2 -1.6 Domain of unknown function (DUF3597). compare
Psest_1961 -1.2 -8.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3762 -1.2 -3.3 iron donor protein CyaY compare
Psest_3483 -1.2 -5.3 respiratory nitrate reductase, gamma subunit compare
Psest_3486 -1.1 -9.8 respiratory nitrate reductase, alpha subunit compare
Psest_1496 -1.1 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_2999 -1.1 -5.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3479 -1.1 -4.9 molybdenum cofactor synthesis domain compare
Psest_0442 -1.1 -1.6 ATPases of the AAA+ class compare
Psest_1509 -1.1 -7.0 quinolinate synthetase complex, A subunit compare
Psest_1818 -1.1 -8.3 GDP-mannose 4,6-dehydratase compare
Psest_1008 -1.1 -1.9 hypothetical protein compare
Psest_1660 -1.1 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3489 -1.1 -7.0 hypothetical protein compare
Psest_2324 -1.1 -9.0 hypothetical protein compare
Psest_0292 -1.1 -2.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2325 -1.1 -6.9 alpha-L-glutamate ligase-related protein compare
Psest_3001 -1.1 -4.4 molybdenum ABC transporter, ATP-binding protein compare
Psest_3112 -1.1 -3.0 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1659 -1.0 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1295 -1.0 -5.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3351 -1.0 -3.0 peptide chain release factor 3 compare
Psest_3000 -1.0 -5.8 molybdate ABC transporter, permease protein compare
Psest_1625 -1.0 -4.3 hypothetical protein compare
Psest_3488 -1.0 -3.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3100 -1.0 -1.9 RNA polymerase sigma factor RpoE compare
Psest_1809 -1.0 -7.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0466 -1.0 -2.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3766 -0.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0529 -0.9 -5.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1783 -0.9 -2.8 Predicted transporter component compare
Psest_2585 -0.9 -1.2 pseudouridylate synthase I compare
Psest_1814 -0.9 -8.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4191 -0.9 -1.4 Transcriptional regulator compare
Psest_2001 -0.9 -1.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4406 -0.9 -0.6 hypothetical protein compare
Psest_0028 -0.9 -3.4 Coproporphyrinogen III oxidase compare
Psest_1819 -0.9 -7.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_1249 -0.9 -4.0 serine O-acetyltransferase compare
Psest_3843 -0.9 -5.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3998 -0.9 -4.0 glutamate--cysteine ligase compare
Psest_0952 -0.8 -2.6 Uncharacterized conserved protein compare
Psest_0662 -0.8 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3487 -0.8 -6.0 Nitrate/nitrite transporter compare
Psest_2847 -0.8 -3.6 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_0144 -0.8 -4.2 Fe-S cluster protector protein compare
Psest_1511 -0.8 -3.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2136 -0.8 -6.1 Predicted homoserine dehydrogenase compare
Psest_0066 -0.8 -2.0 Protein of unknown function (DUF3060). compare
Psest_2945 -0.8 -1.0 septum site-determining protein MinC compare
Psest_1686 -0.8 -3.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2232 -0.8 -6.2 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3042 -0.8 -1.5 Nitrate reductase cytochrome c-type subunit compare
Psest_0954 -0.8 -4.7 Fe-S oxidoreductase compare
Psest_3650 -0.8 -5.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3761 -0.8 -2.5 Transcription elongation factor compare
Psest_1724 -0.8 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3482 -0.8 -3.4 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3745 -0.8 -2.9 Uncharacterized enzyme of heme biosynthesis compare
Psest_2067 -0.8 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3862 -0.8 -5.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3115 -0.7 -3.0 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2850 -0.7 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3212 -0.7 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3481 -0.7 -4.2 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_0959 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3039 -0.7 -1.6 periplasmic nitrate reductase, NapE protein compare
Psest_0744 -0.7 -1.3 Uncharacterized conserved protein compare
Psest_0953 -0.7 -4.3 iron-sulfur cluster-binding protein compare
Psest_1947 -0.7 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0799 -0.7 -2.0 Uncharacterized protein involved in response to NO compare
Psest_0257 -0.7 -2.1 Predicted Zn-dependent peptidases compare
Psest_4276 -0.7 -2.7 hypothetical protein compare
Psest_1242 -0.7 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2872 -0.7 -1.4 protein RecA compare
Psest_1322 -0.7 -1.5 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3648 -0.7 -3.0 anthranilate phosphoribosyltransferase compare
Psest_0062 -0.6 -1.9 tryptophan synthase, alpha subunit compare
Psest_1292 -0.6 -3.3 monothiol glutaredoxin, Grx4 family compare
Psest_1486 -0.6 -1.6 hypothetical protein compare
Psest_3795 -0.6 -4.4 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0987 -0.6 -2.3 Predicted periplasmic or secreted lipoprotein compare
Psest_3813 -0.6 -3.7 ribonuclease PH compare
Psest_4315 -0.6 -2.2 ABC-type metal ion transport system, permease component compare
Psest_1012 -0.6 -2.2 Signal transduction histidine kinase compare
Psest_2520 -0.6 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_4363 -0.6 -3.2 ATPases involved in chromosome partitioning compare
Psest_3435 -0.6 -3.3 hypothetical protein compare
Psest_4221 -0.6 -2.7 homoserine kinase, Neisseria type compare
Psest_1974 -0.6 -2.0 integration host factor, alpha subunit compare
Psest_0325 -0.6 -3.6 Putative threonine efflux protein compare
Psest_3044 -0.6 -3.2 deoxycytidine triphosphate deaminase compare
Psest_0041 -0.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4134 -0.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1145 -0.6 -2.5 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_3117 -0.6 -1.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0843 -0.6 -3.3 hypothetical protein compare
Psest_1695 -0.6 -2.1 Tfp pilus assembly protein PilZ compare
Psest_2846 -0.6 -2.7 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_1815 -0.6 -4.7 pseudaminic acid synthase compare
Psest_1248 -0.5 -3.3 RNA methyltransferase, TrmH family, group 1 compare
Psest_2646 -0.5 -1.1 SOS regulatory protein LexA compare
Psest_4128 -0.5 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1692 -0.5 -3.7 conserved hypothetical protein, YceG family compare
Psest_3317 -0.5 -2.6 Phosphotransferase System HPr (HPr) Family compare
Psest_0457 -0.5 -2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2532 -0.5 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2025 -0.5 -1.4 cold shock domain protein CspD compare
Psest_0759 -0.5 -1.6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1562 -0.5 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3649 -0.5 -3.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0826 -0.5 -3.7 Cytochrome c compare
Psest_2285 -0.5 -1.3 ATP-dependent protease La compare
Psest_3338 -0.5 -0.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0828 -0.5 -2.5 Nitric oxide reductase activation protein compare
Psest_1805 -0.5 -1.3 integration host factor, beta subunit compare
Psest_0827 -0.5 -4.4 Nitric oxide reductase large subunit compare
Psest_4163 -0.5 -1.9 hypothetical protein compare
Psest_2323 -0.5 -3.6 Uncharacterized protein conserved in archaea compare
Psest_3995 -0.5 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2590 -0.5 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3988 -0.5 -2.9 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2647 -0.5 -2.0 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_2446 -0.5 -1.8 acetyl-CoA acetyltransferases compare
Psest_1817 -0.5 -2.3 hypothetical protein compare
Psest_3772 -0.5 -2.6 ammonium transporter compare
Psest_0218 -0.5 -1.8 Acyl-CoA hydrolase compare
Psest_0722 -0.5 -2.5 Predicted ATPase compare
Psest_0459 -0.5 -3.5 Predicted carbamoyl transferase, NodU family compare
Psest_3389 -0.5 -1.8 hypothetical protein compare
Psest_1636 -0.5 -2.6 putative transporter, required for glycine utilization (from data) compare
Psest_4098 -0.5 -1.4 Superfamily I DNA and RNA helicases compare
Psest_3571 -0.5 -3.4 Outer membrane protein W compare
Psest_4051 -0.5 -1.5 molybdenum-pterin binding domain compare
Psest_1037 -0.5 -1.5 acetolactate synthase, small subunit compare
Psest_0067 -0.5 -1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4219 -0.5 -0.9 DNA polymerase I compare
Psest_2848 -0.5 -1.3 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1860 -0.5 -1.4 Uncharacterized conserved protein compare
Psest_0313 -0.5 -2.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4103 -0.5 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_2329 -0.5 -3.6 Transcriptional regulator compare
Psest_0999 -0.5 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1574 -0.4 -1.3 phenazine biosynthesis protein PhzF family compare
Psest_4314 -0.4 -2.3 ABC-type metal ion transport system, ATPase component compare
Psest_3767 -0.4 -1.6 tyrosine recombinase XerC compare
Psest_2584 -0.4 -1.5 Phosphoribosylanthranilate isomerase compare
Psest_3114 -0.4 -2.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1315 -0.4 -1.3 hypothetical protein compare
Psest_1663 -0.4 -1.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4003 -0.4 -2.1 TIGR00153 family protein compare
Psest_0575 -0.4 -0.8 HrpA-like helicases compare
Psest_1752 -0.4 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2849 -0.4 -2.8 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_0558 -0.4 -0.7 urease, beta subunit compare
Psest_0687 -0.4 -2.6 ATP phosphoribosyltransferase, regulatory subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments