Experiment set14H33 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, 100 nM, Mo 1 mM W sample3

200 most important genes:

  gene name fitness t score description  
Psest_1115 -5.9 -5.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2234 -4.2 -15.1 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3479 -4.2 -7.1 molybdenum cofactor synthesis domain compare
Psest_3168 -3.9 -4.5 Molybdopterin converting factor, large subunit compare
Psest_2579 -3.9 -6.4 amidophosphoribosyltransferase compare
Psest_0814 -3.7 -4.7 MoxR-like ATPases compare
Psest_2988 -3.5 -10.4 aspartate kinase, monofunctional class compare
Psest_1473 -3.4 -10.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3480 -3.4 -4.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3484 -3.4 -9.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1961 -3.4 -13.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3486 -3.4 -22.4 respiratory nitrate reductase, alpha subunit compare
Psest_3483 -3.3 -7.4 respiratory nitrate reductase, gamma subunit compare
Psest_3485 -3.3 -17.3 nitrate reductase, beta subunit compare
Psest_3301 -3.2 -5.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3384 -3.2 -11.6 glutamate 5-kinase compare
Psest_0508 -3.0 -9.0 gamma-glutamyl phosphate reductase compare
Psest_3170 -2.7 -5.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0826 -2.7 -9.1 Cytochrome c compare
Psest_3647 -2.6 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_0827 -2.6 -17.2 Nitric oxide reductase large subunit compare
Psest_1656 -2.6 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3720 -2.6 -19.9 penicillin-binding protein, 1A family compare
Psest_1013 -2.6 -3.9 phosphoribosylamine--glycine ligase compare
Psest_2543 -2.5 -8.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0952 -2.5 -4.3 Uncharacterized conserved protein compare
Psest_0837 -2.4 -3.8 Putative lipid carrier protein compare
Psest_3490 -2.3 -6.7 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1295 -2.3 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0828 -2.2 -9.0 Nitric oxide reductase activation protein compare
Psest_3843 -2.1 -10.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2304 -2.1 -2.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0822 -2.1 -5.4 Transcriptional regulators compare
Psest_1511 -2.0 -3.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1657 -2.0 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0954 -1.9 -7.0 Fe-S oxidoreductase compare
Psest_0835 -1.9 -14.0 Collagenase and related proteases compare
Psest_0821 -1.9 -12.5 Cytochrome D1 heme domain. compare
Psest_3489 -1.9 -11.6 hypothetical protein compare
Psest_0820 -1.8 -5.3 hypothetical protein compare
Psest_2544 -1.8 -7.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0836 -1.8 -9.1 Collagenase and related proteases compare
Psest_1655 -1.7 -3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0811 -1.7 -12.3 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3159 -1.7 -6.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3487 -1.7 -9.6 Nitrate/nitrite transporter compare
Psest_0257 -1.7 -4.3 Predicted Zn-dependent peptidases compare
Psest_3322 -1.6 -13.6 TIGR02099 family protein compare
Psest_0958 -1.6 -5.4 Oligoketide cyclase/lipid transport protein compare
Psest_1663 -1.6 -4.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2584 -1.5 -3.9 Phosphoribosylanthranilate isomerase compare
Psest_0062 -1.5 -3.0 tryptophan synthase, alpha subunit compare
Psest_1659 -1.5 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1625 -1.5 -3.7 hypothetical protein compare
Psest_0063 -1.5 -2.4 tryptophan synthase, beta subunit compare
Psest_1474 -1.5 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_0279 -1.5 -6.1 methionine biosynthesis protein MetW compare
Psest_0280 -1.5 -9.8 homoserine O-acetyltransferase compare
Psest_0810 -1.4 -8.8 uroporphyrin-III C-methyltransferase compare
Psest_1661 -1.4 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0953 -1.4 -7.0 iron-sulfur cluster-binding protein compare
Psest_0830 -1.4 -7.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0823 -1.4 -3.1 Transcriptional regulators compare
Psest_3650 -1.4 -9.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0817 -1.3 -7.7 Ethylbenzene dehydrogenase. compare
Psest_1837 -1.3 -7.8 Endoglucanase compare
Psest_3944 -1.3 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0815 -1.3 -9.7 Cytochrome c, mono- and diheme variants compare
Psest_0313 -1.3 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3648 -1.3 -5.5 anthranilate phosphoribosyltransferase compare
Psest_2018 -1.3 -2.2 Uncharacterized conserved protein compare
Psest_1022 -1.3 -6.6 Thiol:disulfide interchange protein compare
Psest_3338 -1.2 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1012 -1.2 -3.8 Signal transduction histidine kinase compare
Psest_3766 -1.2 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3878 -1.2 -3.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4098 -1.2 -2.9 Superfamily I DNA and RNA helicases compare
Psest_3488 -1.2 -3.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2578 -1.2 -8.7 O-succinylhomoserine sulfhydrylase compare
Psest_3339 -1.2 -4.9 Signal transduction histidine kinase compare
Psest_2067 -1.2 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2872 -1.2 -2.2 protein RecA compare
Psest_0529 -1.2 -6.4 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0795 -1.1 -4.7 ABC-type multidrug transport system, ATPase component compare
Psest_0843 -1.1 -5.9 hypothetical protein compare
Psest_0520 -1.1 -1.2 hypothetical protein compare
Psest_3044 -1.1 -4.3 deoxycytidine triphosphate deaminase compare
Psest_0442 -1.1 -1.8 ATPases of the AAA+ class compare
Psest_0687 -1.1 -6.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3351 -1.1 -3.1 peptide chain release factor 3 compare
Psest_3298 -1.1 -7.8 histidinol dehydrogenase compare
Psest_3571 -1.1 -6.1 Outer membrane protein W compare
Psest_0152 -1.0 -4.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_2850 -1.0 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2104 -1.0 -0.7 IscR-regulated protein YhgI compare
Psest_1292 -1.0 -4.8 monothiol glutaredoxin, Grx4 family compare
Psest_3299 -1.0 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1660 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2945 -1.0 -1.0 septum site-determining protein MinC compare
Psest_1818 -1.0 -6.8 GDP-mannose 4,6-dehydratase compare
Psest_0797 -0.9 -6.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_4219 -0.9 -1.5 DNA polymerase I compare
Psest_1809 -0.9 -6.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1496 -0.9 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_3117 -0.9 -2.0 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2037 -0.9 -3.7 uroporphyrin-III C-methyltransferase compare
Psest_1486 -0.9 -3.0 hypothetical protein compare
Psest_0155 -0.9 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0794 -0.9 -7.9 parallel beta-helix repeat (two copies) compare
Psest_0955 -0.9 -4.8 D,L-lactate:H+ symporter (from data) compare
Psest_0959 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0153 -0.9 -6.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0793 -0.9 -7.6 Nitrous oxide reductase compare
Psest_2285 -0.9 -1.9 ATP-dependent protease La compare
Psest_3864 -0.8 -6.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1249 -0.8 -3.8 serine O-acetyltransferase compare
Psest_1822 -0.8 -4.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1679 -0.8 -1.8 ribonuclease, Rne/Rng family compare
Psest_2894 -0.8 -2.5 addiction module antidote protein, HigA family compare
Psest_2136 -0.8 -5.8 Predicted homoserine dehydrogenase compare
Psest_0792 -0.8 -6.6 Regulator of nitric oxide reductase transcription compare
Psest_2541 -0.8 -4.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2025 -0.8 -1.8 cold shock domain protein CspD compare
Psest_0998 -0.7 -1.6 poly(A) polymerase compare
Psest_1242 -0.7 -1.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0498 -0.7 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3100 -0.7 -1.6 RNA polymerase sigma factor RpoE compare
Psest_1313 -0.7 -1.7 Uncharacterized conserved small protein compare
Psest_1532 -0.7 -1.9 DNA recombination-dependent growth factor C compare
Psest_0796 -0.7 -2.8 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3226 -0.7 -1.4 Predicted membrane protein compare
Psest_1248 -0.7 -3.8 RNA methyltransferase, TrmH family, group 1 compare
Psest_2329 -0.7 -5.7 Transcriptional regulator compare
Psest_4128 -0.7 -1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1951 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0310 -0.7 -1.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2413 -0.7 -3.0 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3991 -0.7 -2.6 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1805 -0.7 -1.5 integration host factor, beta subunit compare
Psest_0831 -0.7 -1.3 hypothetical protein compare
Psest_4191 -0.6 -1.2 Transcriptional regulator compare
Psest_2711 -0.6 -2.1 PilZ domain. compare
Psest_3908 -0.6 -1.4 Cytochrome c553 compare
Psest_2810 -0.6 -2.9 5'/3'-nucleotidase SurE compare
Psest_3112 -0.6 -1.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2590 -0.6 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_0846 -0.6 -1.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3884 -0.6 -0.8 Signal transduction histidine kinase compare
Psest_0325 -0.6 -4.0 Putative threonine efflux protein compare
Psest_1692 -0.6 -4.2 conserved hypothetical protein, YceG family compare
Psest_2229 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2511 -0.6 -3.7 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_0673 -0.6 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3838 -0.6 -3.0 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2651 -0.6 -1.1 DNA topoisomerase I, bacterial compare
Psest_2123 -0.6 -1.7 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3113 -0.6 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2752 -0.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3398 -0.6 -2.4 large conductance mechanosensitive channel protein compare
Psest_3458 -0.6 -2.1 hypothetical protein compare
Psest_3927 -0.6 -2.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3943 -0.6 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3575 -0.6 -3.6 Arabinose efflux permease compare
Psest_3115 -0.6 -2.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3795 -0.6 -3.9 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0951 -0.6 -4.0 FAD/FMN-containing dehydrogenases compare
Psest_3435 -0.6 -2.7 hypothetical protein compare
Psest_1920 -0.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1812 -0.6 -3.4 pseudaminic acid CMP-transferase compare
Psest_4363 -0.6 -2.9 ATPases involved in chromosome partitioning compare
Psest_2491 -0.5 -3.3 succinyl-CoA synthetase, beta subunit compare
Psest_1815 -0.5 -4.3 pseudaminic acid synthase compare
Psest_4350 -0.5 -1.7 Transcriptional regulators of sugar metabolism compare
Psest_1947 -0.5 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2772 -0.5 -1.8 MIP family channel proteins compare
Psest_3862 -0.5 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1974 -0.5 -1.9 integration host factor, alpha subunit compare
Psest_0297 -0.5 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1819 -0.5 -4.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_0078 -0.5 -1.0 hypothetical protein compare
Psest_0144 -0.5 -2.6 Fe-S cluster protector protein compare
Psest_3742 -0.5 -3.0 hypothetical protein compare
Psest_3818 -0.5 -2.7 endoribonuclease L-PSP, putative compare
Psest_3114 -0.5 -2.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0697 -0.5 -1.3 ribosomal protein L9 compare
Psest_0558 -0.5 -0.8 urease, beta subunit compare
Psest_0154 -0.5 -2.6 Uncharacterized conserved protein compare
Psest_0799 -0.5 -2.0 Uncharacterized protein involved in response to NO compare
Psest_2693 -0.5 -1.7 muconolactone delta-isomerase compare
Psest_1322 -0.5 -0.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3767 -0.5 -1.8 tyrosine recombinase XerC compare
Psest_0181 -0.5 -2.6 glycine cleavage system T protein compare
Psest_2490 -0.5 -3.8 succinyl-CoA synthetase, alpha subunit compare
Psest_3084 -0.5 -1.3 methyltransferase, putative compare
Psest_2232 -0.5 -3.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1873 -0.5 -1.8 Predicted permease, DMT superfamily compare
Psest_2520 -0.5 -0.9 Predicted SAM-dependent methyltransferase compare
Psest_0393 -0.5 -3.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0139 -0.5 -2.3 ABC-type histidine transport system, ATPase component compare
Psest_0869 -0.5 -1.8 Acetyltransferase (isoleucine patch superfamily) compare


Specific Phenotypes

For 2 genes in this experiment

For metal limitation Ammonium heptamolybdate tetrahydrate in Pseudomonas stutzeri RCH2

For metal limitation Ammonium heptamolybdate tetrahydrate across organisms