Experiment set14H31 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, 100 nM, Mo 1 mM W sample1

200 most important genes:

  gene name fitness t score description  
Psest_3168 -4.9 -4.7 Molybdopterin converting factor, large subunit compare
Psest_2988 -4.3 -10.8 aspartate kinase, monofunctional class compare
Psest_0508 -4.1 -13.3 gamma-glutamyl phosphate reductase compare
Psest_3479 -3.9 -9.5 molybdenum cofactor synthesis domain compare
Psest_2234 -3.9 -16.3 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3301 -3.8 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_0814 -3.7 -5.0 MoxR-like ATPases compare
Psest_3484 -3.6 -9.1 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3483 -3.4 -11.9 respiratory nitrate reductase, gamma subunit compare
Psest_2579 -3.3 -8.0 amidophosphoribosyltransferase compare
Psest_3486 -3.3 -23.3 respiratory nitrate reductase, alpha subunit compare
Psest_1961 -3.3 -12.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3384 -3.3 -12.2 glutamate 5-kinase compare
Psest_3485 -3.2 -18.3 nitrate reductase, beta subunit compare
Psest_3480 -3.2 -5.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1473 -3.2 -11.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1115 -3.1 -6.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3170 -3.0 -7.5 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1657 -2.8 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3647 -2.8 -5.8 Indole-3-glycerol phosphate synthase compare
Psest_0826 -2.8 -13.0 Cytochrome c compare
Psest_1013 -2.7 -4.1 phosphoribosylamine--glycine ligase compare
Psest_1295 -2.6 -8.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3843 -2.5 -11.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0828 -2.4 -7.5 Nitric oxide reductase activation protein compare
Psest_0827 -2.3 -15.0 Nitric oxide reductase large subunit compare
Psest_3720 -2.3 -17.5 penicillin-binding protein, 1A family compare
Psest_0520 -2.2 -1.8 hypothetical protein compare
Psest_1474 -2.1 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_2543 -2.1 -7.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0952 -2.1 -4.5 Uncharacterized conserved protein compare
Psest_1656 -2.0 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3489 -2.0 -11.8 hypothetical protein compare
Psest_0836 -2.0 -9.8 Collagenase and related proteases compare
Psest_1655 -2.0 -3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3159 -1.9 -7.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0063 -1.9 -2.6 tryptophan synthase, beta subunit compare
Psest_0280 -1.9 -12.3 homoserine O-acetyltransferase compare
Psest_3490 -1.9 -5.0 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0835 -1.9 -15.2 Collagenase and related proteases compare
Psest_0954 -1.8 -7.6 Fe-S oxidoreductase compare
Psest_4405 -1.8 -1.2 hypothetical protein compare
Psest_0837 -1.8 -4.8 Putative lipid carrier protein compare
Psest_2544 -1.8 -7.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1022 -1.7 -8.7 Thiol:disulfide interchange protein compare
Psest_0821 -1.7 -11.4 Cytochrome D1 heme domain. compare
Psest_0953 -1.7 -9.0 iron-sulfur cluster-binding protein compare
Psest_1659 -1.7 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0823 -1.7 -5.2 Transcriptional regulators compare
Psest_1511 -1.7 -3.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0820 -1.6 -5.5 hypothetical protein compare
Psest_3092 -1.6 -2.3 ribonuclease III, bacterial compare
Psest_0822 -1.6 -6.1 Transcriptional regulators compare
Psest_3322 -1.6 -13.5 TIGR02099 family protein compare
Psest_3487 -1.6 -8.9 Nitrate/nitrite transporter compare
Psest_0810 -1.5 -9.1 uroporphyrin-III C-methyltransferase compare
Psest_0062 -1.5 -2.9 tryptophan synthase, alpha subunit compare
Psest_3648 -1.5 -6.8 anthranilate phosphoribosyltransferase compare
Psest_1661 -1.5 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0279 -1.5 -7.2 methionine biosynthesis protein MetW compare
Psest_0811 -1.5 -10.5 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_2578 -1.5 -10.9 O-succinylhomoserine sulfhydrylase compare
Psest_1837 -1.5 -9.6 Endoglucanase compare
Psest_1663 -1.5 -4.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0830 -1.5 -8.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3488 -1.4 -2.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0687 -1.3 -7.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2333 -1.3 -1.7 Protein of unknown function (DUF3359). compare
Psest_0817 -1.3 -7.8 Ethylbenzene dehydrogenase. compare
Psest_0795 -1.3 -4.4 ABC-type multidrug transport system, ATPase component compare
Psest_3650 -1.3 -8.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3044 -1.3 -6.0 deoxycytidine triphosphate deaminase compare
Psest_1292 -1.3 -5.8 monothiol glutaredoxin, Grx4 family compare
Psest_0313 -1.3 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3766 -1.3 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1660 -1.3 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1625 -1.3 -5.1 hypothetical protein compare
Psest_0815 -1.2 -9.6 Cytochrome c, mono- and diheme variants compare
Psest_0955 -1.2 -5.0 D,L-lactate:H+ symporter (from data) compare
Psest_3047 -1.2 -2.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0442 -1.2 -1.9 ATPases of the AAA+ class compare
Psest_0310 -1.1 -2.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0958 -1.1 -4.3 Oligoketide cyclase/lipid transport protein compare
Psest_2104 -1.1 -0.7 IscR-regulated protein YhgI compare
Psest_0152 -1.1 -6.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_4219 -1.1 -1.8 DNA polymerase I compare
Psest_2304 -1.1 -2.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2590 -1.1 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_3864 -1.1 -8.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3339 -1.1 -4.7 Signal transduction histidine kinase compare
Psest_4191 -1.1 -1.7 Transcriptional regulator compare
Psest_1809 -1.1 -8.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3298 -1.1 -8.1 histidinol dehydrogenase compare
Psest_1388 -1.1 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2584 -1.1 -4.1 Phosphoribosylanthranilate isomerase compare
Psest_2018 -1.0 -2.0 Uncharacterized conserved protein compare
Psest_2037 -1.0 -5.7 uroporphyrin-III C-methyltransferase compare
Psest_3351 -1.0 -3.0 peptide chain release factor 3 compare
Psest_0529 -1.0 -5.8 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2538 -1.0 -2.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0155 -1.0 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3338 -1.0 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3571 -1.0 -6.6 Outer membrane protein W compare
Psest_1999 -1.0 -1.3 pseudouridine synthase compare
Psest_0725 -1.0 -1.6 Negative regulator of beta-lactamase expression compare
Psest_3226 -1.0 -1.8 Predicted membrane protein compare
Psest_1822 -0.9 -6.0 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0794 -0.9 -8.6 parallel beta-helix repeat (two copies) compare
Psest_2646 -0.9 -2.2 SOS regulatory protein LexA compare
Psest_2136 -0.9 -6.4 Predicted homoserine dehydrogenase compare
Psest_0799 -0.9 -2.2 Uncharacterized protein involved in response to NO compare
Psest_0797 -0.9 -6.4 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_2901 -0.9 -1.5 hypothetical protein compare
Psest_3850 -0.9 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2067 -0.9 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1818 -0.9 -6.1 GDP-mannose 4,6-dehydratase compare
Psest_2872 -0.9 -1.8 protein RecA compare
Psest_0793 -0.8 -7.4 Nitrous oxide reductase compare
Psest_0708 -0.8 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_1226 -0.8 -2.7 hypothetical protein compare
Psest_3323 -0.8 -3.7 ribonuclease, Rne/Rng family compare
Psest_0153 -0.8 -5.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1242 -0.8 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0393 -0.8 -6.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3664 -0.8 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1249 -0.8 -3.4 serine O-acetyltransferase compare
Psest_3299 -0.8 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1679 -0.7 -1.6 ribonuclease, Rne/Rng family compare
Psest_2810 -0.7 -4.0 5'/3'-nucleotidase SurE compare
Psest_3395 -0.7 -1.3 hypothetical protein compare
Psest_1997 -0.7 -2.4 6-phosphogluconolactonase compare
Psest_3399 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3721 -0.7 -4.5 Malic enzyme compare
Psest_0792 -0.7 -6.4 Regulator of nitric oxide reductase transcription compare
Psest_1947 -0.7 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1486 -0.7 -2.6 hypothetical protein compare
Psest_4098 -0.7 -2.1 Superfamily I DNA and RNA helicases compare
Psest_2329 -0.7 -6.0 Transcriptional regulator compare
Psest_2541 -0.7 -4.6 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0843 -0.7 -4.0 hypothetical protein compare
Psest_2491 -0.7 -3.8 succinyl-CoA synthetase, beta subunit compare
Psest_4310 -0.7 -1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2511 -0.7 -3.6 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_4134 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0951 -0.7 -4.9 FAD/FMN-containing dehydrogenases compare
Psest_1843 -0.7 -2.3 Uncharacterized Fe-S protein compare
Psest_0673 -0.7 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0181 -0.7 -4.0 glycine cleavage system T protein compare
Psest_1815 -0.7 -5.4 pseudaminic acid synthase compare
Psest_0846 -0.6 -1.8 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2490 -0.6 -4.6 succinyl-CoA synthetase, alpha subunit compare
Psest_1601 -0.6 -2.1 Signal transduction histidine kinase compare
Psest_2976 -0.6 -1.3 hypothetical protein compare
Psest_0601 -0.6 -1.4 hypothetical protein compare
Psest_2229 -0.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1496 -0.6 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3113 -0.6 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0292 -0.6 -2.3 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0919 -0.6 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2285 -0.6 -1.5 ATP-dependent protease La compare
Psest_0296 -0.6 -3.9 glutathione synthetase, prokaryotic compare
Psest_3146 -0.6 -1.6 hypothetical protein compare
Psest_2850 -0.6 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1957 -0.6 -4.8 outer membrane porin, OprD family. compare
Psest_2532 -0.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0796 -0.6 -2.6 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3944 -0.6 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0309 -0.6 -0.6 RND family efflux transporter, MFP subunit compare
Psest_3795 -0.6 -4.4 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0737 -0.6 -1.0 Cu(I)-responsive transcriptional regulator compare
Psest_2847 -0.6 -1.6 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1532 -0.6 -1.7 DNA recombination-dependent growth factor C compare
Psest_1563 -0.6 -2.1 Protein of unknown function (DUF548). compare
Psest_2325 -0.6 -3.6 alpha-L-glutamate ligase-related protein compare
Psest_0066 -0.6 -1.8 Protein of unknown function (DUF3060). compare
Psest_3943 -0.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1812 -0.5 -3.5 pseudaminic acid CMP-transferase compare
Psest_1012 -0.5 -2.0 Signal transduction histidine kinase compare
Psest_0144 -0.5 -3.1 Fe-S cluster protector protein compare
Psest_2864 -0.5 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1814 -0.5 -4.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1166 -0.5 -1.9 transcriptional regulator, ArgP family compare
Psest_3398 -0.5 -2.3 large conductance mechanosensitive channel protein compare
Psest_3862 -0.5 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2520 -0.5 -1.5 Predicted SAM-dependent methyltransferase compare
Psest_0507 -0.5 -2.7 Uncharacterized membrane-associated protein compare
Psest_4163 -0.5 -1.5 hypothetical protein compare
Psest_3128 -0.5 -2.3 Protein-disulfide isomerase compare
Psest_3818 -0.5 -3.0 endoribonuclease L-PSP, putative compare
Psest_1692 -0.5 -3.6 conserved hypothetical protein, YceG family compare
Psest_2766 -0.5 -1.0 hypothetical protein compare
Psest_0154 -0.5 -2.6 Uncharacterized conserved protein compare
Psest_2150 -0.5 -1.2 DNA polymerase LigD, polymerase domain compare
Psest_0078 -0.5 -1.1 hypothetical protein compare
Psest_0028 -0.5 -2.3 Coproporphyrinogen III oxidase compare
Psest_2719 -0.5 -0.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3042 -0.5 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1762 -0.5 -1.2 cytochrome c-type biogenesis protein CcmI compare
Psest_4051 -0.5 -1.5 molybdenum-pterin binding domain compare
Psest_0498 -0.5 -0.5 ribosome small subunit-dependent GTPase A compare


Specific Phenotypes

For 3 genes in this experiment

For metal limitation Ammonium heptamolybdate tetrahydrate in Pseudomonas stutzeri RCH2

For metal limitation Ammonium heptamolybdate tetrahydrate across organisms