Experiment set14H31 for Pseudomonas stutzeri RCH2
Anaerobic, 100 nM, Mo 1 mM W sample1
Group: metal limitationMedia: RCH2_Lactate_Nitrate_YE-Mo-W + Ammonium heptamolybdate tetrahydrate (100 nM) + Sodium tungstate dihydrate (1 mM), pH=7
Culturing: psRCH2_ML7d, hungate, Anaerobic, at 30 (C), shaken=200 rpm
Growth: about 5.2 generations
By: Mike Adams on 3/27/2014
Specific Phenotypes
For 3 genes in this experiment
For metal limitation Ammonium heptamolybdate tetrahydrate in Pseudomonas stutzeri RCH2
For metal limitation Ammonium heptamolybdate tetrahydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Coenzyme B12 biosynthesis | 1 |
| Dissimilatory nitrite reductase | 1 |
| Experimental tye | 1 |
| Heme and Siroheme Biosynthesis | 1 |
| Thiamin biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| siroheme biosynthesis | 4 | 4 | 3 |
| factor 430 biosynthesis | 7 | 3 | 3 |
| cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) | 15 | 4 | 3 |
| cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 3 | 2 |
| adenosylcobalamin biosynthesis I (anaerobic) | 36 | 20 | 3 |
| adenosylcobalamin biosynthesis II (aerobic) | 33 | 21 | 2 |