Experiment set14H26 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, no Mo, no W, sample2

200 most important genes:

  gene name fitness t score description  
Psest_2234 -3.9 -16.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.4 -11.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2579 -3.2 -7.6 amidophosphoribosyltransferase compare
Psest_3301 -3.1 -3.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_0508 -3.0 -9.1 gamma-glutamyl phosphate reductase compare
Psest_3647 -2.9 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_1295 -2.9 -8.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2988 -2.8 -9.3 aspartate kinase, monofunctional class compare
Psest_1656 -2.7 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3720 -2.5 -19.1 penicillin-binding protein, 1A family compare
Psest_1013 -2.5 -4.5 phosphoribosylamine--glycine ligase compare
Psest_0814 -2.3 -4.7 MoxR-like ATPases compare
Psest_3384 -2.2 -10.1 glutamate 5-kinase compare
Psest_0799 -2.2 -6.7 Uncharacterized protein involved in response to NO compare
Psest_1115 -2.1 -4.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0954 -2.1 -9.4 Fe-S oxidoreductase compare
Psest_0828 -2.0 -8.9 Nitric oxide reductase activation protein compare
Psest_3159 -2.0 -7.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0953 -2.0 -10.1 iron-sulfur cluster-binding protein compare
Psest_2018 -2.0 -2.8 Uncharacterized conserved protein compare
Psest_0062 -1.9 -3.6 tryptophan synthase, alpha subunit compare
Psest_0952 -1.8 -3.3 Uncharacterized conserved protein compare
Psest_0958 -1.8 -5.9 Oligoketide cyclase/lipid transport protein compare
Psest_3843 -1.7 -8.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0826 -1.7 -9.9 Cytochrome c compare
Psest_1655 -1.7 -3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3092 -1.7 -2.4 ribonuclease III, bacterial compare
Psest_1660 -1.7 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1657 -1.6 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4405 -1.6 -1.6 hypothetical protein compare
Psest_0718 -1.6 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_1686 -1.6 -5.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1474 -1.6 -2.1 phosphoribosylaminoimidazole synthetase compare
Psest_2304 -1.6 -2.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2490 -1.6 -10.2 succinyl-CoA synthetase, alpha subunit compare
Psest_3650 -1.5 -10.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1509 -1.5 -8.3 quinolinate synthetase complex, A subunit compare
Psest_3168 -1.5 -3.5 Molybdopterin converting factor, large subunit compare
Psest_1661 -1.5 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1625 -1.5 -3.9 hypothetical protein compare
Psest_0063 -1.5 -2.7 tryptophan synthase, beta subunit compare
Psest_0466 -1.5 -3.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1837 -1.5 -8.3 Endoglucanase compare
Psest_3483 -1.4 -7.4 respiratory nitrate reductase, gamma subunit compare
Psest_3648 -1.4 -6.5 anthranilate phosphoribosyltransferase compare
Psest_3044 -1.4 -6.5 deoxycytidine triphosphate deaminase compare
Psest_3129 -1.4 -1.8 tyrosine recombinase XerD compare
Psest_0827 -1.4 -10.7 Nitric oxide reductase large subunit compare
Psest_2491 -1.4 -6.9 succinyl-CoA synthetase, beta subunit compare
Psest_2067 -1.4 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0442 -1.3 -1.7 ATPases of the AAA+ class compare
Psest_3479 -1.3 -6.7 molybdenum cofactor synthesis domain compare
Psest_2999 -1.3 -5.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0836 -1.3 -6.6 Collagenase and related proteases compare
Psest_2584 -1.3 -5.0 Phosphoribosylanthranilate isomerase compare
Psest_3000 -1.3 -6.9 molybdate ABC transporter, permease protein compare
Psest_1805 -1.2 -3.0 integration host factor, beta subunit compare
Psest_0846 -1.2 -2.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1724 -1.2 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3485 -1.2 -9.6 nitrate reductase, beta subunit compare
Psest_0144 -1.2 -5.2 Fe-S cluster protector protein compare
Psest_3170 -1.2 -6.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0835 -1.2 -10.0 Collagenase and related proteases compare
Psest_2329 -1.2 -9.1 Transcriptional regulator compare
Psest_0313 -1.2 -4.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4191 -1.1 -1.8 Transcriptional regulator compare
Psest_3480 -1.1 -2.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1809 -1.1 -8.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1818 -1.1 -7.9 GDP-mannose 4,6-dehydratase compare
Psest_3490 -1.1 -3.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3486 -1.1 -9.5 respiratory nitrate reductase, alpha subunit compare
Psest_1824 -1.1 -2.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3489 -1.1 -7.6 hypothetical protein compare
Psest_2232 -1.1 -7.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1822 -1.1 -5.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3117 -1.1 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0529 -1.1 -6.0 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2001 -1.1 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3484 -1.1 -4.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3113 -1.1 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2104 -1.1 -0.7 IscR-regulated protein YhgI compare
Psest_3100 -1.1 -2.0 RNA polymerase sigma factor RpoE compare
Psest_2945 -1.0 -1.1 septum site-determining protein MinC compare
Psest_0520 -1.0 -1.1 hypothetical protein compare
Psest_3351 -1.0 -3.1 peptide chain release factor 3 compare
Psest_1961 -1.0 -6.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3884 -1.0 -1.2 Signal transduction histidine kinase compare
Psest_1663 -1.0 -3.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3338 -1.0 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0687 -1.0 -5.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1111 -1.0 -2.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1511 -1.0 -4.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0280 -1.0 -7.4 homoserine O-acetyltransferase compare
Psest_3571 -0.9 -6.5 Outer membrane protein W compare
Psest_3230 -0.9 -4.1 Uncharacterized conserved protein compare
Psest_3226 -0.9 -1.8 Predicted membrane protein compare
Psest_0558 -0.9 -1.4 urease, beta subunit compare
Psest_3001 -0.9 -5.1 molybdenum ABC transporter, ATP-binding protein compare
Psest_1292 -0.9 -4.8 monothiol glutaredoxin, Grx4 family compare
Psest_3115 -0.9 -3.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1819 -0.9 -7.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_1659 -0.9 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1814 -0.9 -7.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4298 -0.9 -1.4 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0844 -0.8 -2.6 High-affinity Fe2+/Pb2+ permease compare
Psest_2136 -0.8 -5.9 Predicted homoserine dehydrogenase compare
Psest_0837 -0.8 -2.4 Putative lipid carrier protein compare
Psest_2325 -0.8 -5.6 alpha-L-glutamate ligase-related protein compare
Psest_2651 -0.8 -1.4 DNA topoisomerase I, bacterial compare
Psest_3998 -0.8 -4.1 glutamate--cysteine ligase compare
Psest_1242 -0.8 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1022 -0.8 -4.6 Thiol:disulfide interchange protein compare
Psest_1920 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2324 -0.8 -6.5 hypothetical protein compare
Psest_1486 -0.8 -2.7 hypothetical protein compare
Psest_2946 -0.8 -1.3 septum site-determining protein MinD compare
Psest_0998 -0.8 -1.8 poly(A) polymerase compare
Psest_0955 -0.8 -3.2 D,L-lactate:H+ symporter (from data) compare
Psest_4003 -0.8 -3.7 TIGR00153 family protein compare
Psest_3488 -0.8 -2.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0843 -0.8 -4.3 hypothetical protein compare
Psest_1249 -0.7 -3.1 serine O-acetyltransferase compare
Psest_3481 -0.7 -4.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3482 -0.7 -3.4 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3664 -0.7 -0.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2446 -0.7 -2.4 acetyl-CoA acetyltransferases compare
Psest_0507 -0.7 -3.7 Uncharacterized membrane-associated protein compare
Psest_3494 -0.7 -2.1 hypothetical protein compare
Psest_4363 -0.7 -3.9 ATPases involved in chromosome partitioning compare
Psest_1562 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0028 -0.7 -3.1 Coproporphyrinogen III oxidase compare
Psest_0393 -0.7 -5.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0461 -0.7 -3.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0310 -0.7 -1.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3862 -0.7 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3766 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1947 -0.7 -0.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0993 -0.7 -3.9 Glucose-6-phosphate isomerase compare
Psest_1532 -0.7 -1.8 DNA recombination-dependent growth factor C compare
Psest_2333 -0.7 -1.0 Protein of unknown function (DUF3359). compare
Psest_0770 -0.6 -3.1 alkylphosphonate utilization operon protein PhnA compare
Psest_2718 -0.6 -1.1 hypothetical protein compare
Psest_2693 -0.6 -2.6 muconolactone delta-isomerase compare
Psest_3487 -0.6 -4.4 Nitrate/nitrite transporter compare
Psest_0279 -0.6 -3.2 methionine biosynthesis protein MetW compare
Psest_1815 -0.6 -5.1 pseudaminic acid synthase compare
Psest_0257 -0.6 -2.0 Predicted Zn-dependent peptidases compare
Psest_0831 -0.6 -1.3 hypothetical protein compare
Psest_3788 -0.6 -2.4 xanthine phosphoribosyltransferase compare
Psest_1813 -0.6 -4.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2188 -0.6 -3.9 AraC-type DNA-binding domain-containing proteins compare
Psest_3112 -0.6 -1.9 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2864 -0.6 -2.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1166 -0.6 -1.8 transcriptional regulator, ArgP family compare
Psest_4098 -0.6 -1.7 Superfamily I DNA and RNA helicases compare
Psest_3649 -0.6 -3.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1692 -0.6 -4.4 conserved hypothetical protein, YceG family compare
Psest_0673 -0.6 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_4219 -0.6 -1.1 DNA polymerase I compare
Psest_1879 -0.6 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_0737 -0.6 -1.0 Cu(I)-responsive transcriptional regulator compare
Psest_0845 -0.6 -0.4 hypothetical protein compare
Psest_2285 -0.6 -1.4 ATP-dependent protease La compare
Psest_2766 -0.6 -1.1 hypothetical protein compare
Psest_1636 -0.6 -3.2 putative transporter, required for glycine utilization (from data) compare
Psest_0459 -0.6 -4.2 Predicted carbamoyl transferase, NodU family compare
Psest_2437 -0.6 -2.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0951 -0.6 -3.9 FAD/FMN-containing dehydrogenases compare
Psest_0218 -0.6 -2.1 Acyl-CoA hydrolase compare
Psest_0872 -0.5 -1.3 Helix-turn-helix. compare
Psest_0014 -0.5 -2.7 PilZ domain. compare
Psest_1679 -0.5 -1.1 ribonuclease, Rne/Rng family compare
Psest_4276 -0.5 -1.7 hypothetical protein compare
Psest_0820 -0.5 -2.6 hypothetical protein compare
Psest_2428 -0.5 -3.1 hypothetical protein compare
Psest_0325 -0.5 -3.4 Putative threonine efflux protein compare
Psest_3850 -0.5 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0155 -0.5 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2810 -0.5 -2.5 5'/3'-nucleotidase SurE compare
Psest_1804 -0.5 -0.3 Superfamily II DNA and RNA helicases compare
Psest_2110 -0.5 -2.0 hypothetical protein compare
Psest_1248 -0.5 -3.3 RNA methyltransferase, TrmH family, group 1 compare
Psest_3908 -0.5 -1.2 Cytochrome c553 compare
Psest_1985 -0.5 -2.5 histidinol-phosphate aminotransferase compare
Psest_3988 -0.5 -2.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1812 -0.5 -3.3 pseudaminic acid CMP-transferase compare
Psest_3322 -0.5 -4.6 TIGR02099 family protein compare
Psest_2578 -0.5 -3.9 O-succinylhomoserine sulfhydrylase compare
Psest_2158 -0.5 -4.2 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2185 -0.5 -3.2 RND family efflux transporter, MFP subunit compare
Psest_3298 -0.5 -3.8 histidinol dehydrogenase compare
Psest_0722 -0.5 -2.6 Predicted ATPase compare
Psest_0153 -0.5 -3.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1012 -0.5 -1.7 Signal transduction histidine kinase compare
Psest_1227 -0.5 -1.6 Predicted SAM-dependent methyltransferase compare
Psest_0462 -0.5 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3767 -0.5 -1.8 tyrosine recombinase XerC compare
Psest_3795 -0.5 -3.2 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2646 -0.5 -1.5 SOS regulatory protein LexA compare
Psest_3299 -0.5 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments