Experiment set14H25 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, no Mo, no W, sample1

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.2 -11.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2579 -3.9 -6.4 amidophosphoribosyltransferase compare
Psest_3301 -3.8 -5.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_0952 -3.7 -5.0 Uncharacterized conserved protein compare
Psest_2234 -3.5 -16.1 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1013 -3.1 -3.0 phosphoribosylamine--glycine ligase compare
Psest_1295 -3.0 -8.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0508 -2.8 -10.6 gamma-glutamyl phosphate reductase compare
Psest_2988 -2.7 -9.0 aspartate kinase, monofunctional class compare
Psest_3092 -2.6 -2.5 ribonuclease III, bacterial compare
Psest_3384 -2.5 -11.3 glutamate 5-kinase compare
Psest_3720 -2.4 -18.5 penicillin-binding protein, 1A family compare
Psest_3647 -2.3 -5.6 Indole-3-glycerol phosphate synthase compare
Psest_0828 -2.3 -9.2 Nitric oxide reductase activation protein compare
Psest_0814 -2.2 -3.6 MoxR-like ATPases compare
Psest_0718 -2.2 -5.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_1656 -2.2 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2304 -2.1 -2.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0953 -2.0 -10.6 iron-sulfur cluster-binding protein compare
Psest_3843 -2.0 -9.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3159 -1.9 -7.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0954 -1.8 -8.3 Fe-S oxidoreductase compare
Psest_0958 -1.8 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_1999 -1.8 -2.3 pseudouridine synthase compare
Psest_1686 -1.8 -5.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3480 -1.7 -4.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1655 -1.7 -3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1659 -1.6 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1474 -1.6 -1.9 phosphoribosylaminoimidazole synthetase compare
Psest_0837 -1.6 -4.3 Putative lipid carrier protein compare
Psest_0827 -1.5 -11.7 Nitric oxide reductase large subunit compare
Psest_0826 -1.5 -7.6 Cytochrome c compare
Psest_1661 -1.4 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2490 -1.4 -10.1 succinyl-CoA synthetase, alpha subunit compare
Psest_1837 -1.4 -9.2 Endoglucanase compare
Psest_3483 -1.4 -7.2 respiratory nitrate reductase, gamma subunit compare
Psest_1509 -1.4 -8.3 quinolinate synthetase complex, A subunit compare
Psest_3650 -1.4 -9.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0063 -1.4 -3.0 tryptophan synthase, beta subunit compare
Psest_1115 -1.4 -4.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3044 -1.4 -4.7 deoxycytidine triphosphate deaminase compare
Psest_3484 -1.3 -5.8 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1724 -1.3 -4.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2999 -1.3 -5.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1486 -1.3 -3.4 hypothetical protein compare
Psest_0062 -1.3 -3.1 tryptophan synthase, alpha subunit compare
Psest_3485 -1.3 -10.3 nitrate reductase, beta subunit compare
Psest_2584 -1.3 -4.0 Phosphoribosylanthranilate isomerase compare
Psest_1625 -1.3 -3.5 hypothetical protein compare
Psest_0835 -1.3 -10.3 Collagenase and related proteases compare
Psest_1822 -1.3 -7.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1805 -1.3 -2.9 integration host factor, beta subunit compare
Psest_0529 -1.2 -7.0 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2232 -1.2 -8.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0144 -1.2 -5.7 Fe-S cluster protector protein compare
Psest_2491 -1.2 -6.7 succinyl-CoA synthetase, beta subunit compare
Psest_3113 -1.2 -1.8 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2329 -1.2 -10.1 Transcriptional regulator compare
Psest_0257 -1.2 -2.4 Predicted Zn-dependent peptidases compare
Psest_3766 -1.2 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0799 -1.2 -3.9 Uncharacterized protein involved in response to NO compare
Psest_3648 -1.2 -5.6 anthranilate phosphoribosyltransferase compare
Psest_1809 -1.1 -7.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3486 -1.1 -9.8 respiratory nitrate reductase, alpha subunit compare
Psest_1657 -1.1 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3112 -1.1 -3.0 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3479 -1.1 -5.9 molybdenum cofactor synthesis domain compare
Psest_3170 -1.1 -5.3 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2850 -1.1 -2.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0836 -1.1 -5.6 Collagenase and related proteases compare
Psest_1818 -1.1 -7.3 GDP-mannose 4,6-dehydratase compare
Psest_0969 -1.1 -1.4 transcription elongation factor GreA compare
Psest_3168 -1.1 -2.1 Molybdopterin converting factor, large subunit compare
Psest_2018 -1.1 -2.1 Uncharacterized conserved protein compare
Psest_1249 -1.0 -4.4 serine O-acetyltransferase compare
Psest_3490 -1.0 -3.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0280 -1.0 -8.0 homoserine O-acetyltransferase compare
Psest_3100 -1.0 -1.9 RNA polymerase sigma factor RpoE compare
Psest_3000 -1.0 -5.7 molybdate ABC transporter, permease protein compare
Psest_3487 -1.0 -7.2 Nitrate/nitrite transporter compare
Psest_0279 -1.0 -4.5 methionine biosynthesis protein MetW compare
Psest_0843 -1.0 -5.4 hypothetical protein compare
Psest_3351 -1.0 -3.0 peptide chain release factor 3 compare
Psest_2325 -1.0 -6.4 alpha-L-glutamate ligase-related protein compare
Psest_2646 -1.0 -2.3 SOS regulatory protein LexA compare
Psest_1087 -1.0 -1.6 uncharacterized peroxidase-related enzyme compare
Psest_1961 -1.0 -6.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3489 -1.0 -6.7 hypothetical protein compare
Psest_4191 -0.9 -1.6 Transcriptional regulator compare
Psest_0292 -0.9 -2.0 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3998 -0.9 -4.1 glutamate--cysteine ligase compare
Psest_2324 -0.9 -7.9 hypothetical protein compare
Psest_3129 -0.9 -1.1 tyrosine recombinase XerD compare
Psest_3481 -0.9 -4.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1660 -0.9 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0313 -0.9 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2285 -0.9 -1.9 ATP-dependent protease La compare
Psest_0442 -0.9 -1.7 ATPases of the AAA+ class compare
Psest_0310 -0.9 -2.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1511 -0.9 -4.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3317 -0.8 -3.7 Phosphotransferase System HPr (HPr) Family compare
Psest_1496 -0.8 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_3001 -0.8 -4.2 molybdenum ABC transporter, ATP-binding protein compare
Psest_4163 -0.8 -2.9 hypothetical protein compare
Psest_1819 -0.8 -7.0 Nucleoside-diphosphate-sugar epimerases compare
Psest_2136 -0.8 -6.0 Predicted homoserine dehydrogenase compare
Psest_3571 -0.8 -5.4 Outer membrane protein W compare
Psest_2308 -0.8 -1.5 Predicted Fe-S protein compare
Psest_3488 -0.8 -2.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1974 -0.8 -1.7 integration host factor, alpha subunit compare
Psest_0393 -0.8 -6.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1814 -0.8 -6.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0955 -0.8 -3.4 D,L-lactate:H+ symporter (from data) compare
Psest_1242 -0.8 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2872 -0.8 -1.4 protein RecA compare
Psest_1663 -0.7 -2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2810 -0.7 -2.9 5'/3'-nucleotidase SurE compare
Psest_2590 -0.7 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_3226 -0.7 -1.4 Predicted membrane protein compare
Psest_0459 -0.7 -5.3 Predicted carbamoyl transferase, NodU family compare
Psest_3212 -0.7 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1679 -0.7 -1.5 ribonuclease, Rne/Rng family compare
Psest_3850 -0.7 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4003 -0.7 -3.5 TIGR00153 family protein compare
Psest_0466 -0.7 -2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0498 -0.7 -0.5 ribosome small subunit-dependent GTPase A compare
Psest_3494 -0.7 -2.8 hypothetical protein compare
Psest_1532 -0.7 -1.9 DNA recombination-dependent growth factor C compare
Psest_1636 -0.7 -3.2 putative transporter, required for glycine utilization (from data) compare
Psest_2188 -0.7 -3.9 AraC-type DNA-binding domain-containing proteins compare
Psest_3115 -0.7 -2.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3745 -0.7 -2.7 Uncharacterized enzyme of heme biosynthesis compare
Psest_1292 -0.7 -3.5 monothiol glutaredoxin, Grx4 family compare
Psest_3649 -0.7 -4.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0028 -0.7 -2.9 Coproporphyrinogen III oxidase compare
Psest_3862 -0.7 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2538 -0.6 -1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1518 -0.6 -1.8 tRNA_Ser_CGA compare
Psest_1313 -0.6 -1.6 Uncharacterized conserved small protein compare
Psest_1947 -0.6 -0.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2333 -0.6 -0.9 Protein of unknown function (DUF3359). compare
Psest_0515 -0.6 -2.0 rare lipoprotein A compare
Psest_3482 -0.6 -2.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2651 -0.6 -1.1 DNA topoisomerase I, bacterial compare
Psest_0309 -0.6 -0.7 RND family efflux transporter, MFP subunit compare
Psest_3944 -0.6 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3988 -0.6 -3.9 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3299 -0.6 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2711 -0.6 -1.3 PilZ domain. compare
Psest_1813 -0.6 -4.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3230 -0.6 -2.9 Uncharacterized conserved protein compare
Psest_1166 -0.6 -2.5 transcriptional regulator, ArgP family compare
Psest_0161 -0.6 -1.2 Membrane-bound metallopeptidase compare
Psest_2104 -0.6 -0.5 IscR-regulated protein YhgI compare
Psest_2613 -0.6 -1.6 hypothetical protein compare
Psest_1907 -0.5 -1.3 hypothetical protein compare
Psest_0673 -0.5 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3697 -0.5 -1.6 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2001 -0.5 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3117 -0.5 -1.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2756 -0.5 -1.0 hypothetical protein compare
Psest_1985 -0.5 -3.3 histidinol-phosphate aminotransferase compare
Psest_2864 -0.5 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0687 -0.5 -3.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1692 -0.5 -3.7 conserved hypothetical protein, YceG family compare
Psest_3927 -0.5 -2.2 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2946 -0.5 -0.8 septum site-determining protein MinD compare
Psest_2470 -0.5 -2.1 hypothetical protein compare
Psest_2566 -0.5 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_3322 -0.5 -4.6 TIGR02099 family protein compare
Psest_3177 -0.5 -1.3 hypothetical protein compare
Psest_2766 -0.5 -0.9 hypothetical protein compare
Psest_2025 -0.5 -1.2 cold shock domain protein CspD compare
Psest_2578 -0.5 -3.7 O-succinylhomoserine sulfhydrylase compare
Psest_1824 -0.5 -1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0722 -0.5 -2.6 Predicted ATPase compare
Psest_0846 -0.5 -1.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1815 -0.5 -4.0 pseudaminic acid synthase compare
Psest_0462 -0.5 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3700 -0.5 -1.2 hypothetical protein compare
Psest_1812 -0.5 -3.0 pseudaminic acid CMP-transferase compare
Psest_0093 -0.5 -2.3 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3323 -0.5 -2.5 ribonuclease, Rne/Rng family compare
Psest_1197 -0.5 -2.8 Ureidoglycolate hydrolase compare
Psest_2083 -0.5 -2.5 Putative sterol carrier protein compare
Psest_3864 -0.5 -3.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0844 -0.5 -1.6 High-affinity Fe2+/Pb2+ permease compare
Psest_3881 -0.5 -1.1 hypothetical protein compare
Psest_1111 -0.5 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2278 -0.5 -2.3 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2186 -0.5 -3.0 Protein of unknown function (DUF1656). compare
Psest_3664 -0.5 -0.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0998 -0.5 -1.0 poly(A) polymerase compare
Psest_2442 -0.5 -1.2 hypothetical protein compare
Psest_0507 -0.4 -2.2 Uncharacterized membrane-associated protein compare
Psest_2379 -0.4 -3.4 PAS domain S-box compare
Psest_3780 -0.4 -1.9 Transcriptional regulator compare
Psest_3398 -0.4 -2.0 large conductance mechanosensitive channel protein compare
Psest_4315 -0.4 -1.8 ABC-type metal ion transport system, permease component compare
Psest_4183 -0.4 -1.1 PilZ domain. compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments