Experiment set14H24 for Pseudomonas stutzeri RCH2

Compare to:

Lactate Nitrate anaerobic with yeast extract sample3

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.7 -11.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2579 -3.5 -6.6 amidophosphoribosyltransferase compare
Psest_2234 -3.4 -15.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1724 -3.3 -3.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1295 -3.3 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3301 -3.0 -4.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_2988 -2.9 -10.0 aspartate kinase, monofunctional class compare
Psest_3720 -2.8 -20.3 penicillin-binding protein, 1A family compare
Psest_0508 -2.7 -12.0 gamma-glutamyl phosphate reductase compare
Psest_3647 -2.7 -5.6 Indole-3-glycerol phosphate synthase compare
Psest_1013 -2.7 -4.0 phosphoribosylamine--glycine ligase compare
Psest_3384 -2.6 -11.0 glutamate 5-kinase compare
Psest_0814 -2.5 -3.9 MoxR-like ATPases compare
Psest_3159 -2.4 -7.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1656 -2.3 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3168 -2.2 -3.4 Molybdopterin converting factor, large subunit compare
Psest_1087 -2.1 -2.6 uncharacterized peroxidase-related enzyme compare
Psest_1474 -2.0 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_0062 -2.0 -3.3 tryptophan synthase, alpha subunit compare
Psest_0953 -1.9 -11.4 iron-sulfur cluster-binding protein compare
Psest_3843 -1.8 -8.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3092 -1.8 -2.3 ribonuclease III, bacterial compare
Psest_0952 -1.8 -4.0 Uncharacterized conserved protein compare
Psest_2651 -1.8 -2.3 DNA topoisomerase I, bacterial compare
Psest_1805 -1.8 -3.5 integration host factor, beta subunit compare
Psest_2304 -1.7 -2.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1655 -1.7 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2232 -1.7 -10.7 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1115 -1.7 -4.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1686 -1.7 -5.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0828 -1.6 -7.0 Nitric oxide reductase activation protein compare
Psest_0954 -1.6 -7.8 Fe-S oxidoreductase compare
Psest_3483 -1.6 -8.1 respiratory nitrate reductase, gamma subunit compare
Psest_3650 -1.6 -10.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1837 -1.6 -9.1 Endoglucanase compare
Psest_1974 -1.5 -3.7 integration host factor, alpha subunit compare
Psest_3484 -1.5 -6.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1660 -1.5 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3998 -1.5 -6.3 glutamate--cysteine ligase compare
Psest_1657 -1.5 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3479 -1.4 -5.9 molybdenum cofactor synthesis domain compare
Psest_0718 -1.4 -4.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_0799 -1.4 -5.3 Uncharacterized protein involved in response to NO compare
Psest_0529 -1.4 -8.2 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0958 -1.4 -4.8 Oligoketide cyclase/lipid transport protein compare
Psest_3480 -1.4 -3.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1661 -1.4 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3648 -1.4 -5.5 anthranilate phosphoribosyltransferase compare
Psest_1496 -1.4 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_2325 -1.4 -7.9 alpha-L-glutamate ligase-related protein compare
Psest_3044 -1.3 -6.1 deoxycytidine triphosphate deaminase compare
Psest_0846 -1.3 -2.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1809 -1.3 -8.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1822 -1.3 -6.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0063 -1.3 -3.1 tryptophan synthase, beta subunit compare
Psest_1999 -1.3 -1.8 pseudouridine synthase compare
Psest_0144 -1.3 -5.1 Fe-S cluster protector protein compare
Psest_3170 -1.3 -6.2 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2324 -1.2 -9.5 hypothetical protein compare
Psest_0498 -1.2 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_3486 -1.2 -10.6 respiratory nitrate reductase, alpha subunit compare
Psest_2329 -1.2 -9.4 Transcriptional regulator compare
Psest_0836 -1.2 -7.3 Collagenase and related proteases compare
Psest_1818 -1.2 -8.3 GDP-mannose 4,6-dehydratase compare
Psest_3485 -1.2 -9.0 nitrate reductase, beta subunit compare
Psest_0191 -1.2 -1.3 PAS domain S-box compare
Psest_0845 -1.2 -0.7 hypothetical protein compare
Psest_0310 -1.2 -2.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1659 -1.2 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0835 -1.2 -9.4 Collagenase and related proteases compare
Psest_1625 -1.1 -3.5 hypothetical protein compare
Psest_1679 -1.1 -1.5 ribonuclease, Rne/Rng family compare
Psest_2067 -1.1 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3490 -1.1 -4.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3766 -1.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0826 -1.1 -6.2 Cytochrome c compare
Psest_0969 -1.1 -1.6 transcription elongation factor GreA compare
Psest_3114 -1.1 -4.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0827 -1.1 -8.7 Nitric oxide reductase large subunit compare
Psest_1292 -1.1 -5.0 monothiol glutaredoxin, Grx4 family compare
Psest_0393 -1.1 -7.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3862 -1.1 -7.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3100 -1.0 -1.9 RNA polymerase sigma factor RpoE compare
Psest_0837 -1.0 -2.5 Putative lipid carrier protein compare
Psest_0313 -1.0 -4.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1819 -1.0 -8.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_0442 -1.0 -1.7 ATPases of the AAA+ class compare
Psest_1509 -1.0 -5.1 quinolinate synthetase complex, A subunit compare
Psest_4003 -1.0 -4.5 TIGR00153 family protein compare
Psest_1511 -1.0 -4.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1532 -1.0 -2.5 DNA recombination-dependent growth factor C compare
Psest_1814 -1.0 -8.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0558 -1.0 -1.4 urease, beta subunit compare
Psest_0955 -1.0 -4.0 D,L-lactate:H+ symporter (from data) compare
Psest_3001 -1.0 -4.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_0843 -1.0 -5.1 hypothetical protein compare
Psest_1961 -0.9 -7.0 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1765 -0.9 -4.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3489 -0.9 -7.0 hypothetical protein compare
Psest_4219 -0.9 -1.6 DNA polymerase I compare
Psest_2584 -0.9 -2.0 Phosphoribosylanthranilate isomerase compare
Psest_2538 -0.9 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0461 -0.9 -5.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0998 -0.9 -1.9 poly(A) polymerase compare
Psest_1824 -0.9 -1.9 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2136 -0.9 -6.4 Predicted homoserine dehydrogenase compare
Psest_0280 -0.9 -6.8 homoserine O-acetyltransferase compare
Psest_1813 -0.9 -6.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2933 -0.8 -6.4 Signal transduction histidine kinase compare
Psest_2490 -0.8 -6.1 succinyl-CoA synthetase, alpha subunit compare
Psest_0334 -0.8 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3270 -0.8 -2.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3571 -0.8 -5.3 Outer membrane protein W compare
Psest_3487 -0.8 -5.7 Nitrate/nitrite transporter compare
Psest_1012 -0.8 -3.0 Signal transduction histidine kinase compare
Psest_3745 -0.8 -3.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_0993 -0.8 -5.0 Glucose-6-phosphate isomerase compare
Psest_2104 -0.8 -0.7 IscR-regulated protein YhgI compare
Psest_3881 -0.8 -1.7 hypothetical protein compare
Psest_3482 -0.8 -3.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3565 -0.8 -1.4 hypothetical protein compare
Psest_2864 -0.8 -2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2872 -0.8 -1.5 protein RecA compare
Psest_4191 -0.8 -1.5 Transcriptional regulator compare
Psest_2894 -0.8 -2.1 addiction module antidote protein, HigA family compare
Psest_2850 -0.8 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1486 -0.8 -2.3 hypothetical protein compare
Psest_3112 -0.8 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3481 -0.7 -4.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_2590 -0.7 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_4010 -0.7 -1.6 peroxiredoxin, OsmC subfamily compare
Psest_1242 -0.7 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0292 -0.7 -1.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2809 -0.7 -1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4363 -0.7 -3.8 ATPases involved in chromosome partitioning compare
Psest_1249 -0.7 -3.3 serine O-acetyltransferase compare
Psest_3398 -0.7 -3.0 large conductance mechanosensitive channel protein compare
Psest_0218 -0.7 -2.6 Acyl-CoA hydrolase compare
Psest_3649 -0.7 -4.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3488 -0.7 -3.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2491 -0.7 -4.0 succinyl-CoA synthetase, beta subunit compare
Psest_3908 -0.7 -1.4 Cytochrome c553 compare
Psest_2018 -0.7 -1.4 Uncharacterized conserved protein compare
Psest_3115 -0.7 -2.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3351 -0.7 -2.0 peptide chain release factor 3 compare
Psest_0257 -0.7 -1.9 Predicted Zn-dependent peptidases compare
Psest_3317 -0.7 -2.7 Phosphotransferase System HPr (HPr) Family compare
Psest_0842 -0.7 -2.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0844 -0.6 -2.1 High-affinity Fe2+/Pb2+ permease compare
Psest_0722 -0.6 -3.2 Predicted ATPase compare
Psest_4325 -0.6 -2.2 hypothetical protein compare
Psest_0687 -0.6 -3.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1636 -0.6 -3.3 putative transporter, required for glycine utilization (from data) compare
Psest_3174 -0.6 -5.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3762 -0.6 -2.1 iron donor protein CyaY compare
Psest_1947 -0.6 -0.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0805 -0.6 -2.4 hypothetical protein compare
Psest_0028 -0.6 -2.6 Coproporphyrinogen III oxidase compare
Psest_4098 -0.6 -1.7 Superfamily I DNA and RNA helicases compare
Psest_3069 -0.6 -1.7 3-oxoadipate enol-lactonase compare
Psest_3988 -0.6 -3.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0170 -0.6 -3.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_2580 -0.6 -2.4 Uncharacterized membrane protein, required for colicin V production compare
Psest_3113 -0.6 -0.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3767 -0.6 -1.8 tyrosine recombinase XerC compare
Psest_3795 -0.6 -4.2 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1815 -0.6 -4.8 pseudaminic acid synthase compare
Psest_1111 -0.6 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4095 -0.6 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1731 -0.6 -1.7 flagellar biosynthetic protein FliO compare
Psest_0459 -0.6 -4.1 Predicted carbamoyl transferase, NodU family compare
Psest_3338 -0.6 -0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0325 -0.6 -3.6 Putative threonine efflux protein compare
Psest_0515 -0.6 -1.8 rare lipoprotein A compare
Psest_2323 -0.6 -4.1 Uncharacterized protein conserved in archaea compare
Psest_0462 -0.6 -5.4 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2999 -0.6 -2.9 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0673 -0.6 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_4221 -0.6 -2.2 homoserine kinase, Neisseria type compare
Psest_3000 -0.6 -3.8 molybdate ABC transporter, permease protein compare
Psest_0737 -0.6 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2229 -0.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0279 -0.6 -3.2 methionine biosynthesis protein MetW compare
Psest_2470 -0.6 -1.5 hypothetical protein compare
Psest_2613 -0.5 -1.1 hypothetical protein compare
Psest_4124 -0.5 -2.3 hypothetical protein compare
Psest_2810 -0.5 -2.4 5'/3'-nucleotidase SurE compare
Psest_1293 -0.5 -1.5 VanZ like family. compare
Psest_0355 -0.5 -1.5 Glycine cleavage system regulatory protein compare
Psest_0466 -0.5 -1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3435 -0.5 -2.5 hypothetical protein compare
Psest_1103 -0.5 -1.4 GTP-binding protein YchF compare
Psest_1997 -0.5 -1.5 6-phosphogluconolactonase compare
Psest_3151 -0.5 -1.9 hypothetical protein compare
Psest_1230 -0.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1447 -0.5 -2.1 Putative threonine efflux protein compare
Psest_1692 -0.5 -3.6 conserved hypothetical protein, YceG family compare
Psest_0306 -0.5 -4.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2023 -0.5 -1.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0813 -0.5 -3.0 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments