Experiment set14H23 for Pseudomonas stutzeri RCH2

Compare to:

Lactate Nitrate anaerobic with yeast extract sample2

200 most important genes:

  gene name fitness t score description  
Psest_2234 -4.0 -15.2 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.7 -11.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3301 -3.5 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_2579 -3.4 -6.9 amidophosphoribosyltransferase compare
Psest_3647 -3.1 -5.5 Indole-3-glycerol phosphate synthase compare
Psest_0508 -3.0 -12.3 gamma-glutamyl phosphate reductase compare
Psest_2067 -2.8 -2.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3384 -2.6 -11.6 glutamate 5-kinase compare
Psest_1013 -2.6 -3.9 phosphoribosylamine--glycine ligase compare
Psest_3720 -2.5 -17.8 penicillin-binding protein, 1A family compare
Psest_2988 -2.5 -9.0 aspartate kinase, monofunctional class compare
Psest_0954 -2.5 -8.7 Fe-S oxidoreductase compare
Psest_1657 -2.3 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1295 -2.2 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0828 -2.0 -8.5 Nitric oxide reductase activation protein compare
Psest_3159 -2.0 -7.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0953 -1.9 -9.4 iron-sulfur cluster-binding protein compare
Psest_0952 -1.9 -4.2 Uncharacterized conserved protein compare
Psest_0718 -1.9 -4.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_0062 -1.9 -3.3 tryptophan synthase, alpha subunit compare
Psest_3843 -1.9 -9.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1656 -1.9 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1242 -1.8 -3.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3479 -1.8 -7.9 molybdenum cofactor synthesis domain compare
Psest_1686 -1.7 -6.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3648 -1.7 -7.3 anthranilate phosphoribosyltransferase compare
Psest_3650 -1.7 -10.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0846 -1.7 -3.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1805 -1.6 -3.2 integration host factor, beta subunit compare
Psest_1837 -1.5 -8.8 Endoglucanase compare
Psest_3483 -1.5 -8.6 respiratory nitrate reductase, gamma subunit compare
Psest_0799 -1.5 -5.4 Uncharacterized protein involved in response to NO compare
Psest_0958 -1.5 -4.9 Oligoketide cyclase/lipid transport protein compare
Psest_3170 -1.5 -5.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2232 -1.4 -9.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1724 -1.4 -3.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3998 -1.4 -6.0 glutamate--cysteine ligase compare
Psest_3112 -1.4 -3.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3490 -1.4 -5.3 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0826 -1.4 -8.2 Cytochrome c compare
Psest_1625 -1.3 -4.2 hypothetical protein compare
Psest_3168 -1.3 -2.7 Molybdopterin converting factor, large subunit compare
Psest_1474 -1.3 -2.3 phosphoribosylaminoimidazole synthetase compare
Psest_0827 -1.3 -10.1 Nitric oxide reductase large subunit compare
Psest_1655 -1.3 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0837 -1.3 -2.4 Putative lipid carrier protein compare
Psest_1659 -1.3 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3338 -1.3 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2945 -1.3 -1.2 septum site-determining protein MinC compare
Psest_1961 -1.3 -8.4 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1822 -1.3 -6.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0814 -1.2 -2.0 MoxR-like ATPases compare
Psest_1115 -1.2 -3.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1509 -1.2 -7.3 quinolinate synthetase complex, A subunit compare
Psest_0063 -1.2 -2.8 tryptophan synthase, beta subunit compare
Psest_2538 -1.2 -2.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1809 -1.2 -8.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2584 -1.2 -3.9 Phosphoribosylanthranilate isomerase compare
Psest_3114 -1.2 -4.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1818 -1.2 -8.3 GDP-mannose 4,6-dehydratase compare
Psest_2325 -1.2 -6.5 alpha-L-glutamate ligase-related protein compare
Psest_2329 -1.2 -9.4 Transcriptional regulator compare
Psest_2304 -1.1 -1.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0845 -1.1 -0.7 hypothetical protein compare
Psest_0835 -1.1 -9.1 Collagenase and related proteases compare
Psest_1532 -1.1 -2.6 DNA recombination-dependent growth factor C compare
Psest_1661 -1.1 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3485 -1.1 -8.3 nitrate reductase, beta subunit compare
Psest_3762 -1.1 -2.8 iron donor protein CyaY compare
Psest_3486 -1.1 -9.9 respiratory nitrate reductase, alpha subunit compare
Psest_1660 -1.1 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0193 -1.1 -1.8 conserved hypothetical protein compare
Psest_1249 -1.1 -4.5 serine O-acetyltransferase compare
Psest_1486 -1.1 -3.5 hypothetical protein compare
Psest_3044 -1.1 -4.5 deoxycytidine triphosphate deaminase compare
Psest_0313 -1.1 -4.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1496 -1.1 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_0442 -1.1 -1.8 ATPases of the AAA+ class compare
Psest_3480 -1.1 -3.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0836 -1.0 -6.2 Collagenase and related proteases compare
Psest_3489 -1.0 -6.4 hypothetical protein compare
Psest_2324 -1.0 -8.4 hypothetical protein compare
Psest_0279 -1.0 -4.5 methionine biosynthesis protein MetW compare
Psest_2104 -1.0 -0.7 IscR-regulated protein YhgI compare
Psest_3484 -1.0 -5.0 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0998 -1.0 -1.9 poly(A) polymerase compare
Psest_0280 -1.0 -7.8 homoserine O-acetyltransferase compare
Psest_4098 -1.0 -2.5 Superfamily I DNA and RNA helicases compare
Psest_3351 -1.0 -2.8 peptide chain release factor 3 compare
Psest_0843 -1.0 -5.2 hypothetical protein compare
Psest_0529 -1.0 -5.5 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3488 -0.9 -3.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3092 -0.9 -1.6 ribonuclease III, bacterial compare
Psest_3745 -0.9 -3.3 Uncharacterized enzyme of heme biosynthesis compare
Psest_1814 -0.9 -7.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4003 -0.9 -4.0 TIGR00153 family protein compare
Psest_1012 -0.9 -3.0 Signal transduction histidine kinase compare
Psest_2136 -0.9 -5.6 Predicted homoserine dehydrogenase compare
Psest_0310 -0.9 -2.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2333 -0.9 -1.2 Protein of unknown function (DUF3359). compare
Psest_0393 -0.9 -6.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0144 -0.9 -4.1 Fe-S cluster protector protein compare
Psest_0993 -0.9 -5.3 Glucose-6-phosphate isomerase compare
Psest_2590 -0.9 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3115 -0.9 -3.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0844 -0.9 -2.4 High-affinity Fe2+/Pb2+ permease compare
Psest_3766 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1819 -0.9 -6.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_1511 -0.9 -4.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3100 -0.9 -1.7 RNA polymerase sigma factor RpoE compare
Psest_2490 -0.9 -5.7 succinyl-CoA synthetase, alpha subunit compare
Psest_3270 -0.8 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3664 -0.8 -0.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1765 -0.8 -4.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2872 -0.8 -1.6 protein RecA compare
Psest_0722 -0.8 -4.0 Predicted ATPase compare
Psest_3129 -0.8 -1.0 tyrosine recombinase XerD compare
Psest_3317 -0.8 -3.7 Phosphotransferase System HPr (HPr) Family compare
Psest_0687 -0.8 -4.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3481 -0.8 -4.1 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1813 -0.8 -5.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0955 -0.8 -3.5 D,L-lactate:H+ symporter (from data) compare
Psest_3862 -0.8 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0355 -0.8 -2.0 Glycine cleavage system regulatory protein compare
Psest_2023 -0.8 -2.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1292 -0.8 -3.7 monothiol glutaredoxin, Grx4 family compare
Psest_0097 -0.8 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2025 -0.8 -1.7 cold shock domain protein CspD compare
Psest_2018 -0.7 -1.5 Uncharacterized conserved protein compare
Psest_0498 -0.7 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_2651 -0.7 -1.4 DNA topoisomerase I, bacterial compare
Psest_3117 -0.7 -1.7 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0662 -0.7 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4103 -0.7 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_4221 -0.7 -2.8 homoserine kinase, Neisseria type compare
Psest_3001 -0.7 -3.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_2864 -0.7 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3878 -0.7 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3487 -0.7 -5.3 Nitrate/nitrite transporter compare
Psest_2491 -0.7 -3.5 succinyl-CoA synthetase, beta subunit compare
Psest_1709 -0.7 -3.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0325 -0.7 -4.3 Putative threonine efflux protein compare
Psest_2188 -0.7 -3.7 AraC-type DNA-binding domain-containing proteins compare
Psest_1248 -0.6 -3.7 RNA methyltransferase, TrmH family, group 1 compare
Psest_0292 -0.6 -1.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3896 -0.6 -2.6 arsenite-activated ATPase ArsA compare
Psest_4405 -0.6 -0.7 hypothetical protein compare
Psest_3988 -0.6 -3.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3145 -0.6 -1.6 hypothetical protein compare
Psest_3123 -0.6 -0.8 dihydroorotase, homodimeric type compare
Psest_1999 -0.6 -1.0 pseudouridine synthase compare
Psest_0050 -0.6 -2.8 Predicted acetyltransferase compare
Psest_0257 -0.6 -2.2 Predicted Zn-dependent peptidases compare
Psest_3649 -0.6 -3.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3482 -0.6 -3.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3000 -0.6 -4.2 molybdate ABC transporter, permease protein compare
Psest_2933 -0.6 -4.4 Signal transduction histidine kinase compare
Psest_2766 -0.6 -1.1 hypothetical protein compare
Psest_1947 -0.6 -0.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2999 -0.6 -3.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_2810 -0.6 -3.2 5'/3'-nucleotidase SurE compare
Psest_1974 -0.6 -2.0 integration host factor, alpha subunit compare
Psest_0459 -0.6 -4.2 Predicted carbamoyl transferase, NodU family compare
Psest_0153 -0.6 -4.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3174 -0.6 -4.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3531 -0.6 -1.0 Peptidase propeptide and YPEB domain. compare
Psest_1204 -0.5 -1.1 Transcriptional regulators compare
Psest_1890 -0.5 -3.7 Uncharacterized conserved protein compare
Psest_4363 -0.5 -3.0 ATPases involved in chromosome partitioning compare
Psest_0155 -0.5 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0462 -0.5 -5.3 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1815 -0.5 -4.4 pseudaminic acid synthase compare
Psest_0078 -0.5 -1.2 hypothetical protein compare
Psest_0146 -0.5 -3.4 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_2532 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3761 -0.5 -1.4 Transcription elongation factor compare
Psest_2323 -0.5 -3.8 Uncharacterized protein conserved in archaea compare
Psest_0601 -0.5 -1.2 hypothetical protein compare
Psest_1843 -0.5 -1.7 Uncharacterized Fe-S protein compare
Psest_3435 -0.5 -2.8 hypothetical protein compare
Psest_3113 -0.5 -0.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3864 -0.5 -4.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3795 -0.5 -3.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1812 -0.5 -3.7 pseudaminic acid CMP-transferase compare
Psest_3146 -0.5 -0.9 hypothetical protein compare
Psest_3449 -0.5 -0.7 DJ-1 family protein compare
Psest_3299 -0.5 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3571 -0.5 -3.5 Outer membrane protein W compare
Psest_0684 -0.5 -2.7 GTP-binding protein HflX compare
Psest_0152 -0.5 -2.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_0028 -0.5 -2.2 Coproporphyrinogen III oxidase compare
Psest_1752 -0.5 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0170 -0.5 -3.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_4134 -0.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2901 -0.5 -0.9 hypothetical protein compare
Psest_3391 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4350 -0.5 -1.6 Transcriptional regulators of sugar metabolism compare
Psest_3496 -0.5 -1.3 Predicted metal-binding protein compare
Psest_1293 -0.5 -1.1 VanZ like family. compare
Psest_2726 -0.5 -1.0 Rhodanese-related sulfurtransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments