Experiment set14H22 for Pseudomonas stutzeri RCH2

Compare to:

Lactate Nitrate anaerobic with yeast extract sample1

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.7 -9.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.5 -15.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2579 -3.4 -6.9 amidophosphoribosyltransferase compare
Psest_1724 -3.2 -6.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1013 -3.0 -3.5 phosphoribosylamine--glycine ligase compare
Psest_3647 -2.8 -5.3 Indole-3-glycerol phosphate synthase compare
Psest_0508 -2.7 -11.8 gamma-glutamyl phosphate reductase compare
Psest_3301 -2.7 -5.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_3720 -2.7 -19.1 penicillin-binding protein, 1A family compare
Psest_1295 -2.6 -8.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3159 -2.3 -8.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1805 -2.3 -4.1 integration host factor, beta subunit compare
Psest_3384 -2.2 -10.8 glutamate 5-kinase compare
Psest_2988 -2.2 -8.3 aspartate kinase, monofunctional class compare
Psest_2304 -2.0 -2.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1496 -2.0 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_1655 -2.0 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2651 -2.0 -2.3 DNA topoisomerase I, bacterial compare
Psest_1657 -1.9 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0718 -1.9 -5.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_1656 -1.9 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3843 -1.9 -11.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0062 -1.8 -3.0 tryptophan synthase, alpha subunit compare
Psest_0954 -1.8 -7.3 Fe-S oxidoreductase compare
Psest_0952 -1.8 -4.2 Uncharacterized conserved protein compare
Psest_0814 -1.8 -4.2 MoxR-like ATPases compare
Psest_0953 -1.7 -8.3 iron-sulfur cluster-binding protein compare
Psest_0828 -1.7 -7.1 Nitric oxide reductase activation protein compare
Psest_3170 -1.7 -5.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1837 -1.7 -10.2 Endoglucanase compare
Psest_0063 -1.7 -3.3 tryptophan synthase, beta subunit compare
Psest_2232 -1.7 -11.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3650 -1.6 -10.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1686 -1.6 -5.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1474 -1.6 -1.9 phosphoribosylaminoimidazole synthetase compare
Psest_2850 -1.6 -2.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3480 -1.5 -2.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1115 -1.5 -4.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0799 -1.5 -3.9 Uncharacterized protein involved in response to NO compare
Psest_3484 -1.5 -5.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3479 -1.4 -6.7 molybdenum cofactor synthesis domain compare
Psest_0466 -1.4 -3.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0529 -1.4 -8.3 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3648 -1.4 -6.5 anthranilate phosphoribosyltransferase compare
Psest_3483 -1.4 -5.4 respiratory nitrate reductase, gamma subunit compare
Psest_0958 -1.3 -5.0 Oligoketide cyclase/lipid transport protein compare
Psest_1809 -1.3 -9.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3490 -1.3 -5.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0442 -1.3 -1.8 ATPases of the AAA+ class compare
Psest_1661 -1.3 -1.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1532 -1.3 -2.8 DNA recombination-dependent growth factor C compare
Psest_2325 -1.2 -7.6 alpha-L-glutamate ligase-related protein compare
Psest_0827 -1.2 -9.9 Nitric oxide reductase large subunit compare
Psest_1961 -1.2 -7.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3488 -1.2 -4.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0843 -1.2 -6.3 hypothetical protein compare
Psest_1625 -1.2 -3.5 hypothetical protein compare
Psest_1822 -1.2 -6.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0836 -1.2 -7.1 Collagenase and related proteases compare
Psest_0393 -1.2 -8.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3485 -1.2 -8.6 nitrate reductase, beta subunit compare
Psest_0835 -1.2 -9.3 Collagenase and related proteases compare
Psest_1818 -1.2 -8.3 GDP-mannose 4,6-dehydratase compare
Psest_0826 -1.2 -6.4 Cytochrome c compare
Psest_3486 -1.2 -10.1 respiratory nitrate reductase, alpha subunit compare
Psest_1814 -1.2 -9.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2329 -1.1 -8.8 Transcriptional regulator compare
Psest_2324 -1.1 -9.6 hypothetical protein compare
Psest_1292 -1.1 -5.4 monothiol glutaredoxin, Grx4 family compare
Psest_1659 -1.1 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0959 -1.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3998 -1.1 -5.2 glutamate--cysteine ligase compare
Psest_0257 -1.1 -3.4 Predicted Zn-dependent peptidases compare
Psest_1819 -1.1 -8.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_3044 -1.1 -4.4 deoxycytidine triphosphate deaminase compare
Psest_3489 -1.0 -7.3 hypothetical protein compare
Psest_4098 -1.0 -2.8 Superfamily I DNA and RNA helicases compare
Psest_4003 -1.0 -4.6 TIGR00153 family protein compare
Psest_2067 -1.0 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4405 -1.0 -1.0 hypothetical protein compare
Psest_2945 -1.0 -1.1 septum site-determining protein MinC compare
Psest_0144 -1.0 -3.9 Fe-S cluster protector protein compare
Psest_4191 -1.0 -1.7 Transcriptional regulator compare
Psest_1974 -1.0 -2.7 integration host factor, alpha subunit compare
Psest_2490 -0.9 -6.2 succinyl-CoA synthetase, alpha subunit compare
Psest_0537 -0.9 -2.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3226 -0.9 -1.7 Predicted membrane protein compare
Psest_0334 -0.9 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3862 -0.9 -6.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1813 -0.9 -6.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1511 -0.9 -3.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1249 -0.9 -3.9 serine O-acetyltransferase compare
Psest_3168 -0.9 -2.4 Molybdopterin converting factor, large subunit compare
Psest_1920 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1012 -0.8 -2.7 Signal transduction histidine kinase compare
Psest_1824 -0.8 -2.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0955 -0.8 -3.8 D,L-lactate:H+ symporter (from data) compare
Psest_1999 -0.8 -1.3 pseudouridine synthase compare
Psest_1663 -0.8 -2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0498 -0.8 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_1111 -0.8 -2.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3571 -0.8 -5.7 Outer membrane protein W compare
Psest_1509 -0.8 -5.4 quinolinate synthetase complex, A subunit compare
Psest_3117 -0.8 -1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3762 -0.8 -2.1 iron donor protein CyaY compare
Psest_3649 -0.8 -5.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0837 -0.8 -2.7 Putative lipid carrier protein compare
Psest_3481 -0.8 -4.2 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_2136 -0.8 -5.8 Predicted homoserine dehydrogenase compare
Psest_2491 -0.8 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_2933 -0.8 -6.0 Signal transduction histidine kinase compare
Psest_0313 -0.8 -3.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1242 -0.8 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1765 -0.8 -5.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3745 -0.7 -2.7 Uncharacterized enzyme of heme biosynthesis compare
Psest_0279 -0.7 -3.4 methionine biosynthesis protein MetW compare
Psest_0993 -0.7 -4.4 Glucose-6-phosphate isomerase compare
Psest_0461 -0.7 -4.8 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2693 -0.7 -2.2 muconolactone delta-isomerase compare
Psest_1815 -0.7 -5.9 pseudaminic acid synthase compare
Psest_3995 -0.7 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3113 -0.7 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0280 -0.7 -5.2 homoserine O-acetyltransferase compare
Psest_2584 -0.7 -2.2 Phosphoribosylanthranilate isomerase compare
Psest_2018 -0.7 -1.4 Uncharacterized conserved protein compare
Psest_3487 -0.7 -4.9 Nitrate/nitrite transporter compare
Psest_2911 -0.7 -2.0 Protein of unknown function (DUF2945). compare
Psest_3270 -0.6 -1.7 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3496 -0.6 -1.2 Predicted metal-binding protein compare
Psest_3795 -0.6 -4.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1486 -0.6 -2.3 hypothetical protein compare
Psest_3001 -0.6 -3.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_0462 -0.6 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1947 -0.6 -0.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3351 -0.6 -2.0 peptide chain release factor 3 compare
Psest_1812 -0.6 -4.2 pseudaminic acid CMP-transferase compare
Psest_3988 -0.6 -3.3 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_4363 -0.6 -3.4 ATPases involved in chromosome partitioning compare
Psest_3115 -0.6 -2.5 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0687 -0.6 -3.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3174 -0.6 -4.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2323 -0.6 -4.1 Uncharacterized protein conserved in archaea compare
Psest_4219 -0.6 -1.2 DNA polymerase I compare
Psest_3338 -0.6 -0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0770 -0.6 -3.0 alkylphosphonate utilization operon protein PhnA compare
Psest_0170 -0.6 -3.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_3878 -0.6 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0182 -0.6 -4.0 glycine cleavage system H protein compare
Psest_2999 -0.6 -2.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1986 -0.6 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2520 -0.6 -1.3 Predicted SAM-dependent methyltransferase compare
Psest_1518 -0.6 -1.2 tRNA_Ser_CGA compare
Psest_2646 -0.6 -1.2 SOS regulatory protein LexA compare
Psest_1506 -0.6 -2.5 queuosine biosynthesis protein QueC compare
Psest_4043 -0.6 -2.7 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0533 -0.6 -2.6 Sel1 repeat. compare
Psest_3482 -0.6 -2.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1447 -0.5 -2.0 Putative threonine efflux protein compare
Psest_2104 -0.5 -0.5 IscR-regulated protein YhgI compare
Psest_3937 -0.5 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3850 -0.5 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0844 -0.5 -1.8 High-affinity Fe2+/Pb2+ permease compare
Psest_3377 -0.5 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1660 -0.5 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1679 -0.5 -1.1 ribonuclease, Rne/Rng family compare
Psest_3317 -0.5 -1.9 Phosphotransferase System HPr (HPr) Family compare
Psest_3435 -0.5 -2.7 hypothetical protein compare
Psest_3767 -0.5 -2.0 tyrosine recombinase XerC compare
Psest_0796 -0.5 -2.3 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0153 -0.5 -3.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1248 -0.5 -2.9 RNA methyltransferase, TrmH family, group 1 compare
Psest_0846 -0.5 -1.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0212 -0.5 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_1524 -0.5 -1.8 Sel1 repeat. compare
Psest_0507 -0.5 -2.8 Uncharacterized membrane-associated protein compare
Psest_4343 -0.5 -1.6 Protein of unknown function (DUF3301). compare
Psest_3944 -0.5 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2809 -0.5 -1.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1884 -0.5 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3839 -0.5 -2.1 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3000 -0.5 -3.5 molybdate ABC transporter, permease protein compare
Psest_3339 -0.5 -2.2 Signal transduction histidine kinase compare
Psest_3419 -0.5 -3.1 Predicted transcriptional regulators compare
Psest_3447 -0.5 -1.0 Uncharacterized MobA-related protein compare
Psest_4209 -0.5 -2.0 Uncharacterized conserved small protein compare
Psest_0951 -0.5 -3.6 FAD/FMN-containing dehydrogenases compare
Psest_3322 -0.5 -4.4 TIGR02099 family protein compare
Psest_0813 -0.5 -2.7 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1082 -0.5 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2282 -0.5 -1.8 Dihydroorotate dehydrogenase compare
Psest_3772 -0.5 -2.2 ammonium transporter compare
Psest_3449 -0.5 -1.4 DJ-1 family protein compare
Psest_0292 -0.5 -0.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_4276 -0.5 -1.5 hypothetical protein compare
Psest_0722 -0.5 -2.5 Predicted ATPase compare
Psest_3230 -0.5 -2.3 Uncharacterized conserved protein compare
Psest_3895 -0.5 -1.4 hypothetical protein compare
Psest_1527 -0.5 -3.8 Na+/proline symporter compare
Psest_0359 -0.5 -1.5 Transcriptional regulators compare
Psest_2158 -0.5 -3.7 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments