Experiment set14H11 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, with iron sample2

200 most important genes:

  gene name fitness t score description  
Psest_0062 -4.0 -15.5 tryptophan synthase, alpha subunit compare
Psest_2988 -4.0 -9.5 aspartate kinase, monofunctional class compare
Psest_0063 -3.9 -13.8 tryptophan synthase, beta subunit compare
Psest_2234 -3.7 -14.2 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.3 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3226 -2.8 -2.2 Predicted membrane protein compare
Psest_0814 -2.7 -3.1 MoxR-like ATPases compare
Psest_1657 -2.5 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3647 -2.5 -6.8 Indole-3-glycerol phosphate synthase compare
Psest_3384 -2.4 -9.8 glutamate 5-kinase compare
Psest_1656 -2.3 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0508 -2.3 -10.7 gamma-glutamyl phosphate reductase compare
Psest_1115 -2.3 -4.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3483 -2.3 -8.1 respiratory nitrate reductase, gamma subunit compare
Psest_3170 -2.2 -7.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0828 -2.1 -7.6 Nitric oxide reductase activation protein compare
Psest_1686 -2.1 -6.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0799 -2.1 -4.7 Uncharacterized protein involved in response to NO compare
Psest_2329 -2.1 -13.2 Transcriptional regulator compare
Psest_2579 -2.0 -4.3 amidophosphoribosyltransferase compare
Psest_3998 -2.0 -6.7 glutamate--cysteine ligase compare
Psest_1679 -2.0 -2.6 ribonuclease, Rne/Rng family compare
Psest_3301 -1.9 -4.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_1242 -1.9 -1.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0837 -1.9 -5.4 Putative lipid carrier protein compare
Psest_0952 -1.9 -3.5 Uncharacterized conserved protein compare
Psest_1920 -1.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3479 -1.9 -7.4 molybdenum cofactor synthesis domain compare
Psest_1661 -1.9 -1.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3650 -1.8 -11.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -1.8 -8.5 anthranilate phosphoribosyltransferase compare
Psest_1511 -1.8 -5.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0835 -1.8 -14.5 Collagenase and related proteases compare
Psest_1961 -1.8 -11.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3485 -1.8 -11.2 nitrate reductase, beta subunit compare
Psest_3168 -1.8 -3.1 Molybdopterin converting factor, large subunit compare
Psest_0826 -1.7 -7.6 Cytochrome c compare
Psest_0144 -1.7 -5.3 Fe-S cluster protector protein compare
Psest_3484 -1.7 -6.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1659 -1.7 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3488 -1.7 -5.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2872 -1.7 -2.4 protein RecA compare
Psest_3486 -1.6 -13.1 respiratory nitrate reductase, alpha subunit compare
Psest_0827 -1.6 -11.7 Nitric oxide reductase large subunit compare
Psest_3490 -1.5 -4.0 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0836 -1.5 -7.3 Collagenase and related proteases compare
Psest_1295 -1.5 -4.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3044 -1.5 -5.6 deoxycytidine triphosphate deaminase compare
Psest_2786 -1.5 -2.2 Domain of unknown function (DUF3597). compare
Psest_2945 -1.5 -1.0 septum site-determining protein MinC compare
Psest_2766 -1.5 -1.9 hypothetical protein compare
Psest_3480 -1.5 -2.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3092 -1.4 -1.6 ribonuclease III, bacterial compare
Psest_2088 -1.4 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2104 -1.4 -1.3 IscR-regulated protein YhgI compare
Psest_4191 -1.4 -2.1 Transcriptional regulator compare
Psest_1660 -1.4 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2584 -1.4 -3.7 Phosphoribosylanthranilate isomerase compare
Psest_0953 -1.4 -9.1 iron-sulfur cluster-binding protein compare
Psest_3000 -1.3 -6.6 molybdate ABC transporter, permease protein compare
Psest_1474 -1.3 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_1814 -1.3 -9.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0260 -1.3 -1.8 Cell division protein compare
Psest_0277 -1.3 -2.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1249 -1.3 -4.2 serine O-acetyltransferase compare
Psest_1463 -1.3 -1.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0958 -1.3 -4.1 Oligoketide cyclase/lipid transport protein compare
Psest_0954 -1.3 -4.8 Fe-S oxidoreductase compare
Psest_2651 -1.2 -1.6 DNA topoisomerase I, bacterial compare
Psest_1012 -1.2 -2.5 Signal transduction histidine kinase compare
Psest_1804 -1.2 -1.1 Superfamily II DNA and RNA helicases compare
Psest_4221 -1.2 -5.0 homoserine kinase, Neisseria type compare
Psest_2999 -1.2 -4.9 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0442 -1.2 -1.6 ATPases of the AAA+ class compare
Psest_3129 -1.2 -0.8 tyrosine recombinase XerD compare
Psest_2285 -1.2 -2.2 ATP-dependent protease La compare
Psest_2460 -1.2 -2.7 hypothetical protein compare
Psest_3489 -1.2 -7.9 hypothetical protein compare
Psest_1655 -1.2 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4098 -1.1 -2.6 Superfamily I DNA and RNA helicases compare
Psest_1805 -1.1 -2.3 integration host factor, beta subunit compare
Psest_3878 -1.1 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3862 -1.1 -8.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3843 -1.1 -5.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1724 -1.0 -3.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2490 -1.0 -7.0 succinyl-CoA synthetase, alpha subunit compare
Psest_0296 -1.0 -6.8 glutathione synthetase, prokaryotic compare
Psest_1013 -1.0 -1.3 phosphoribosylamine--glycine ligase compare
Psest_3159 -1.0 -2.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3649 -1.0 -5.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0515 -1.0 -2.6 rare lipoprotein A compare
Psest_2491 -0.9 -4.0 succinyl-CoA synthetase, beta subunit compare
Psest_0575 -0.9 -1.3 HrpA-like helicases compare
Psest_2892 -0.9 -2.3 Transcriptional regulator compare
Psest_2324 -0.9 -7.2 hypothetical protein compare
Psest_2901 -0.9 -2.0 hypothetical protein compare
Psest_4405 -0.9 -1.1 hypothetical protein compare
Psest_3317 -0.9 -3.8 Phosphotransferase System HPr (HPr) Family compare
Psest_4310 -0.9 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1496 -0.9 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3860 -0.9 -1.6 Predicted permeases compare
Psest_0718 -0.9 -2.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_3146 -0.8 -1.8 hypothetical protein compare
Psest_3487 -0.8 -4.7 Nitrate/nitrite transporter compare
Psest_3001 -0.8 -2.4 molybdenum ABC transporter, ATP-binding protein compare
Psest_3481 -0.8 -3.6 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_0969 -0.8 -1.1 transcription elongation factor GreA compare
Psest_2083 -0.8 -3.3 Putative sterol carrier protein compare
Psest_3546 -0.8 -1.3 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3115 -0.8 -3.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1704 -0.8 -1.1 Dehydrogenases (flavoproteins) compare
Psest_3938 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3766 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1231 -0.7 -3.8 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_0218 -0.7 -2.4 Acyl-CoA hydrolase compare
Psest_1860 -0.7 -1.9 Uncharacterized conserved protein compare
Psest_2585 -0.7 -1.0 pseudouridylate synthase I compare
Psest_0833 -0.7 -3.6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0359 -0.7 -2.3 Transcriptional regulators compare
Psest_1241 -0.7 -3.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2325 -0.7 -4.0 alpha-L-glutamate ligase-related protein compare
Psest_1509 -0.7 -4.3 quinolinate synthetase complex, A subunit compare
Psest_3322 -0.7 -6.0 TIGR02099 family protein compare
Psest_4078 -0.7 -1.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3114 -0.7 -3.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3113 -0.6 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1518 -0.6 -1.5 tRNA_Ser_CGA compare
Psest_2907 -0.6 -1.4 Protein of unknown function (DUF3618). compare
Psest_3458 -0.6 -1.9 hypothetical protein compare
Psest_2714 -0.6 -1.0 7-cyano-7-deazaguanine reductase compare
Psest_2188 -0.6 -3.7 AraC-type DNA-binding domain-containing proteins compare
Psest_0398 -0.6 -4.1 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1292 -0.6 -2.3 monothiol glutaredoxin, Grx4 family compare
Psest_2500 -0.6 -1.4 hypothetical protein compare
Psest_3762 -0.6 -1.8 iron donor protein CyaY compare
Psest_1636 -0.6 -2.5 putative transporter, required for glycine utilization (from data) compare
Psest_3447 -0.6 -1.3 Uncharacterized MobA-related protein compare
Psest_3351 -0.6 -2.9 peptide chain release factor 3 compare
Psest_3045 -0.6 -1.2 Cold shock proteins compare
Psest_1506 -0.6 -2.3 queuosine biosynthesis protein QueC compare
Psest_0297 -0.6 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1163 -0.6 -2.6 diguanylate cyclase (GGDEF) domain compare
Psest_3117 -0.6 -1.6 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1103 -0.6 -1.5 GTP-binding protein YchF compare
Psest_3482 -0.6 -2.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2864 -0.6 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2933 -0.6 -4.1 Signal transduction histidine kinase compare
Psest_3077 -0.6 -2.0 Protein of unknown function (DUF3203). compare
Psest_2018 -0.6 -1.3 Uncharacterized conserved protein compare
Psest_2333 -0.6 -0.9 Protein of unknown function (DUF3359). compare
Psest_2248 -0.6 -1.2 Predicted transcriptional regulators compare
Psest_1663 -0.5 -1.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0161 -0.5 -1.4 Membrane-bound metallopeptidase compare
Psest_4003 -0.5 -2.2 TIGR00153 family protein compare
Psest_1951 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0558 -0.5 -0.6 urease, beta subunit compare
Psest_2148 -0.5 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2645 -0.5 -2.4 Transcriptional regulator compare
Psest_1975 -0.5 -3.2 Predicted transcriptional regulators compare
Psest_1974 -0.5 -1.6 integration host factor, alpha subunit compare
Psest_3496 -0.5 -1.5 Predicted metal-binding protein compare
Psest_1366 -0.5 -0.8 hypothetical protein compare
Psest_0507 -0.5 -2.5 Uncharacterized membrane-associated protein compare
Psest_0609 -0.5 -0.6 hypothetical protein compare
Psest_1879 -0.5 -1.2 Trk-type K+ transport systems, membrane components compare
Psest_0697 -0.5 -1.5 ribosomal protein L9 compare
Psest_2983 -0.5 -1.9 hypothetical protein compare
Psest_0722 -0.5 -2.4 Predicted ATPase compare
Psest_0869 -0.5 -1.7 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0212 -0.5 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_2848 -0.5 -2.1 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1230 -0.5 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3303 -0.5 -2.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1480 -0.5 -1.7 arsenate reductase (glutaredoxin) compare
Psest_1089 -0.5 -2.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2580 -0.5 -1.8 Uncharacterized membrane protein, required for colicin V production compare
Psest_0822 -0.5 -2.0 Transcriptional regulators compare
Psest_2039 -0.5 -2.6 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_0487 -0.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0709 -0.5 -3.1 pseudouridine synthase, RluA family compare
Psest_1597 -0.5 -2.1 Protein of unknown function (DUF2933). compare
Psest_3853 -0.5 -1.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0485 -0.5 -1.8 clan AA aspartic protease, TIGR02281 family compare
Psest_2591 -0.5 -1.6 3-isopropylmalate dehydratase, large subunit compare
Psest_2809 -0.5 -1.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2268 -0.5 -1.5 Alcohol dehydrogenase, class IV compare
Psest_2629 -0.5 -2.0 Flp pilus assembly protein, pilin Flp compare
Psest_1765 -0.5 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1870 -0.5 -0.6 Transcriptional regulators compare
Psest_1864 -0.5 -2.4 diguanylate cyclase (GGDEF) domain compare
Psest_4219 -0.5 -0.9 DNA polymerase I compare
Psest_2863 -0.5 -2.2 Transcriptional regulator compare
Psest_1893 -0.5 -2.7 glucokinase, proteobacterial type compare
Psest_2062 -0.5 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3426 -0.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0652 -0.5 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2643 -0.5 -0.8 Beta-glucosidase-related glycosidases compare
Psest_2566 -0.4 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0275 -0.4 -1.8 Protein of unknown function (DUF3392). compare
Psest_1665 -0.4 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Kanamycin sulfate across organisms