Experiment set13S90 for Phocaeicola vulgatus CL09T03C04

Compare to:

Arabinoxylan (Rye Flour) 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS11730 -5.2 -2.1 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS01615 -4.2 -1.0 tRNA-Lys compare
HMPREF1058_RS18870 -4.2 -1.7 hypothetical protein compare
HMPREF1058_RS19210 -4.1 -1.9 hypothetical protein compare
HMPREF1058_RS11375 -3.7 -1.2 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS03135 -3.4 -1.4 5S ribosomal RNA compare
HMPREF1058_RS01880 -3.4 -1.5 hypothetical protein compare
HMPREF1058_RS08535 -3.2 -2.7 elongation factor P compare
HMPREF1058_RS18770 -3.1 -1.2 hypothetical protein compare
HMPREF1058_RS15395 -3.1 -2.0 dihydroorotase compare
HMPREF1058_RS07195 -3.0 -2.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS07090 -2.9 -1.9 hypothetical protein compare
HMPREF1058_RS10295 -2.9 -2.1 hypothetical protein compare
HMPREF1058_RS16510 -2.8 -2.7 methylmalonyl-CoA epimerase compare
HMPREF1058_RS12170 -2.8 -2.0 hypothetical protein compare
HMPREF1058_RS15435 -2.7 -5.8 hypothetical protein compare
HMPREF1058_RS0119340 -2.7 -3.3 IS1182 family transposase compare
HMPREF1058_RS12105 -2.7 -3.2 shikimate kinase compare
HMPREF1058_RS09750 -2.6 -5.0 glycosyltransferase compare
HMPREF1058_RS04615 -2.5 -2.9 hypothetical protein compare
HMPREF1058_RS18940 -2.5 -1.4 hypothetical protein compare
HMPREF1058_RS14555 -2.5 -2.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS03455 -2.5 -1.8 hypothetical protein compare
HMPREF1058_RS00590 -2.4 -3.3 hypothetical protein compare
HMPREF1058_RS01390 -2.4 -3.6 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS01570 -2.4 -5.2 ABC transporter substrate-binding protein compare
HMPREF1058_RS05650 -2.4 -2.3 hypothetical protein compare
HMPREF1058_RS13730 -2.3 -2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS21005 -2.2 -2.5 nitrous oxide-stimulated promoter family protein compare
HMPREF1058_RS15875 -2.2 -5.7 histidinol dehydrogenase compare
HMPREF1058_RS01205 -2.2 -1.5 methyltransferase compare
HMPREF1058_RS10840 -2.2 -1.9 hypothetical protein compare
HMPREF1058_RS19015 -2.2 -3.1 hypothetical protein compare
HMPREF1058_RS12070 -2.2 -2.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS07190 -2.2 -3.4 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS17965 -2.1 -0.9 DUF452 family protein compare
HMPREF1058_RS15880 -2.1 -6.2 histidinol-phosphate transaminase compare
HMPREF1058_RS01820 -2.1 -1.5 hypothetical protein compare
HMPREF1058_RS17815 -2.1 -4.1 MFS transporter compare
HMPREF1058_RS14505 -2.1 -3.7 mechanosensitive ion channel compare
HMPREF1058_RS21490 -2.1 -2.1 hypothetical protein compare
HMPREF1058_RS21590 -2.0 -1.1 hypothetical protein compare
HMPREF1058_RS18535 -2.0 -1.6 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS14285 -2.0 -2.2 DUF5056 domain-containing protein compare
HMPREF1058_RS14770 -2.0 -5.2 prephenate dehydrogenase compare
HMPREF1058_RS01540 -2.0 -5.0 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS17700 -2.0 -2.8 chaperone modulator CbpM compare
HMPREF1058_RS04075 -2.0 -1.3 DUF58 domain-containing protein compare
HMPREF1058_RS03915 -2.0 -7.1 hypothetical protein compare
HMPREF1058_RS08650 -2.0 -4.8 glutamate 5-kinase compare
HMPREF1058_RS20355 -2.0 -2.0 hypothetical protein compare
HMPREF1058_RS12490 -2.0 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS07200 -1.9 -5.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS01280 -1.9 -3.7 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS01715 -1.9 -4.1 LysO family transporter compare
HMPREF1058_RS07170 -1.9 -5.5 tryptophan synthase subunit beta compare
HMPREF1058_RS08645 -1.8 -7.8 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS15885 -1.8 -3.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS03190 -1.8 -3.8 V-type ATP synthase subunit D compare
HMPREF1058_RS11490 -1.8 -2.8 redox-regulated ATPase YchF compare
HMPREF1058_RS09675 -1.8 -3.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS01180 -1.7 -3.1 ABC transporter ATP-binding protein compare
HMPREF1058_RS08830 -1.7 -4.7 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS11625 -1.7 -8.3 S41 family peptidase compare
HMPREF1058_RS14730 -1.7 -4.6 threonine synthase compare
HMPREF1058_RS14545 -1.7 -5.3 2-isopropylmalate synthase compare
HMPREF1058_RS14790 -1.7 -5.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS00700 -1.7 -5.9 DUF4831 family protein compare
HMPREF1058_RS17760 -1.6 -1.5 YkgB family protein compare
HMPREF1058_RS17435 -1.6 -2.4 DUF3575 domain-containing protein compare
HMPREF1058_RS21515 -1.6 -2.0 hypothetical protein compare
HMPREF1058_RS18055 -1.6 -5.5 TolC family protein compare
HMPREF1058_RS05145 -1.6 -3.9 ATP-binding protein compare
HMPREF1058_RS07180 -1.6 -3.3 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS03485 -1.6 -2.2 RloB domain-containing protein compare
HMPREF1058_RS05415 -1.6 -1.3 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS11915 -1.6 -1.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06170 -1.6 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS07080 -1.6 -1.8 YtxH domain-containing protein compare
HMPREF1058_RS04610 -1.6 -2.3 ATP-binding protein compare
HMPREF1058_RS13515 -1.6 -8.3 MFS transporter compare
HMPREF1058_RS09585 -1.6 -8.1 argininosuccinate lyase compare
HMPREF1058_RS01560 -1.6 -2.1 ABC transporter ATP-binding protein compare
HMPREF1058_RS07185 -1.6 -4.0 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS03980 -1.6 -1.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS12780 -1.6 -6.2 M20 family metallo-hydrolase compare
HMPREF1058_RS10970 -1.6 -5.0 ribonuclease R compare
HMPREF1058_RS05520 -1.5 -0.5 DUF4357 domain-containing protein compare
HMPREF1058_RS18575 -1.5 -3.1 YqgE/AlgH family protein compare
HMPREF1058_RS04565 -1.5 -2.1 hypothetical protein compare
HMPREF1058_RS08840 -1.5 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS06460 -1.5 -1.7 hypothetical protein compare
HMPREF1058_RS05645 -1.5 -2.1 DUF4249 domain-containing protein compare
HMPREF1058_RS14720 -1.5 -6.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS04825 -1.5 -2.3 hypothetical protein compare
HMPREF1058_RS14795 -1.5 -4.0 prephenate dehydratase compare
HMPREF1058_RS08640 -1.5 -1.6 acetylornithine carbamoyltransferase compare
HMPREF1058_RS08855 -1.5 -7.3 arginine repressor compare
HMPREF1058_RS03295 -1.5 -1.1 sulfur carrier protein ThiS compare
HMPREF1058_RS15630 -1.5 -4.7 FGGY-family carbohydrate kinase compare
HMPREF1058_RS05930 -1.5 -4.4 MFS transporter compare
HMPREF1058_RS10835 -1.5 -3.5 UDP-galactopyranose mutase compare
HMPREF1058_RS16730 -1.5 -2.1 chorismate synthase compare
HMPREF1058_RS02800 -1.4 -3.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS08060 -1.4 -3.4 hypothetical protein compare
HMPREF1058_RS16690 -1.4 -4.0 NTP transferase domain-containing protein compare
HMPREF1058_RS13635 -1.4 -2.2 gliding motility lipoprotein GldH compare
HMPREF1058_RS01690 -1.4 -3.4 sugar kinase compare
HMPREF1058_RS04370 -1.4 -3.4 agmatine deiminase family protein compare
HMPREF1058_RS14565 -1.4 -5.7 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS11205 -1.4 -0.8 radical SAM protein compare
HMPREF1058_RS01685 -1.4 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS09745 -1.4 -4.0 glycosyltransferase compare
HMPREF1058_RS16825 -1.4 -5.8 acetolactate synthase small subunit compare
HMPREF1058_RS06560 -1.4 -3.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS16260 -1.4 -2.8 hotdog fold thioesterase compare
HMPREF1058_RS19140 -1.4 -2.5 hypothetical protein compare
HMPREF1058_RS16755 -1.4 -1.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS13305 -1.4 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
HMPREF1058_RS08295 -1.4 -3.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS10080 -1.4 -6.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS06195 -1.4 -4.9 diaminopimelate decarboxylase compare
HMPREF1058_RS06915 -1.4 -2.9 diaminopimelate epimerase compare
HMPREF1058_RS11270 -1.4 -5.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS12065 -1.4 -0.8 DUF4491 family protein compare
HMPREF1058_RS18295 -1.4 -6.5 response regulator compare
HMPREF1058_RS01500 -1.4 -1.3 hypothetical protein compare
HMPREF1058_RS10910 -1.4 -6.9 glycosyltransferase family 39 protein compare
HMPREF1058_RS17195 -1.4 -2.2 hypothetical protein compare
HMPREF1058_RS16250 -1.4 -4.6 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS20340 -1.4 -1.5 DUF3873 family protein compare
HMPREF1058_RS06085 -1.3 -7.8 hypothetical protein compare
HMPREF1058_RS19085 -1.3 -1.5 hypothetical protein compare
HMPREF1058_RS15870 -1.3 -3.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS15635 -1.3 -6.1 L-arabinose isomerase compare
HMPREF1058_RS01960 -1.3 -2.7 hypothetical protein compare
HMPREF1058_RS08875 -1.3 -4.3 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS13855 -1.3 -3.7 histidine phosphatase family protein compare
HMPREF1058_RS21440 -1.3 -1.5 hypothetical protein compare
HMPREF1058_RS10900 -1.3 -4.7 glycosyltransferase compare
HMPREF1058_RS06175 -1.3 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS02220 -1.3 -3.2 branched-chain amino acid aminotransferase compare
HMPREF1058_RS01575 -1.3 -3.4 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS15895 -1.3 -2.1 transcriptional repressor compare
HMPREF1058_RS11040 -1.3 -3.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS00565 -1.3 -4.1 hemolysin III family protein compare
HMPREF1058_RS02170 -1.3 -3.6 hypothetical protein compare
HMPREF1058_RS16070 -1.3 -2.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08850 -1.3 -3.1 N-acetyltransferase compare
HMPREF1058_RS10995 -1.3 -4.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS12115 -1.3 -5.0 acetylglutamate kinase compare
HMPREF1058_RS01475 -1.3 -1.0 hypothetical protein compare
HMPREF1058_RS01745 -1.3 -2.8 PorT family protein compare
HMPREF1058_RS15075 -1.2 -4.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS16920 -1.2 -2.5 nucleoside triphosphate pyrophosphohydrolase compare
HMPREF1058_RS07535 -1.2 -1.1 hypothetical protein compare
HMPREF1058_RS01460 -1.2 -1.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06180 -1.2 -2.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS01290 -1.2 -1.6 DUF1622 domain-containing protein compare
HMPREF1058_RS14560 -1.2 -4.6 2-isopropylmalate synthase compare
HMPREF1058_RS04025 -1.2 -4.0 hypothetical protein compare
HMPREF1058_RS06210 -1.2 -1.5 antibiotic biosynthesis monooxygenase compare
HMPREF1058_RS08845 -1.2 -4.5 argininosuccinate synthase compare
HMPREF1058_RS07635 -1.2 -1.1 50S ribosomal protein L9 compare
HMPREF1058_RS20195 -1.2 -2.2 hypothetical protein compare
HMPREF1058_RS10710 -1.2 -4.7 DUF3108 domain-containing protein compare
HMPREF1058_RS21625 -1.2 -1.6 hypothetical protein compare
HMPREF1058_RS17365 -1.2 -1.3 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS17205 -1.2 -1.2 DUF4199 domain-containing protein compare
HMPREF1058_RS04805 -1.2 -2.0 hypothetical protein compare
HMPREF1058_RS17775 -1.2 -2.5 hypothetical protein compare
HMPREF1058_RS00595 -1.2 -1.8 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS10075 -1.2 -4.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14785 -1.1 -3.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS03795 -1.1 -3.1 MATE family efflux transporter compare
HMPREF1058_RS01590 -1.1 -4.1 glucuronate isomerase compare
HMPREF1058_RS05075 -1.1 -1.5 hypothetical protein compare
HMPREF1058_RS10895 -1.1 -7.2 LTA synthase family protein compare
HMPREF1058_RS01395 -1.1 -3.0 cobyric acid synthase compare
HMPREF1058_RS09955 -1.1 -0.7 hypothetical protein compare
HMPREF1058_RS15710 -1.1 -3.7 cytidine deaminase compare
HMPREF1058_RS04355 -1.1 -2.7 sodium:proton antiporter compare
HMPREF1058_RS18385 -1.1 -3.6 alpha-xylosidase compare
HMPREF1058_RS06470 -1.1 -1.8 hypothetical protein compare
HMPREF1058_RS12750 -1.1 -3.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11890 -1.1 -2.4 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS08780 -1.1 -4.4 4Fe-4S binding protein compare
HMPREF1058_RS04080 -1.1 -2.1 AAA family ATPase compare
HMPREF1058_RS19145 -1.1 -1.8 phage antirepressor KilAC domain-containing protein compare
HMPREF1058_RS01550 -1.1 -2.8 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS14120 -1.1 -4.6 DUF349 domain-containing protein compare
HMPREF1058_RS14550 -1.1 -4.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS10360 -1.1 -1.6 hypothetical protein compare
HMPREF1058_RS14030 -1.1 -4.7 DUF3822 family protein compare
HMPREF1058_RS09000 -1.1 -2.9 FecR domain-containing protein compare
HMPREF1058_RS01555 -1.1 -2.0 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS20495 -1.1 -3.2 hypothetical protein compare
HMPREF1058_RS18755 -1.1 -3.3 hypothetical protein compare
HMPREF1058_RS10535 -1.1 -7.3 response regulator compare
HMPREF1058_RS21600 -1.1 -1.7 histidine kinase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Arabinoxylan (Rye Flour) in Phocaeicola vulgatus CL09T03C04

For carbon source Arabinoxylan (Rye Flour) across organisms