Experiment set13S9 for Phocaeicola vulgatus CL09T03C04

Compare to:

beta-Cyclodextrin 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -8.0 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS08855 -6.9 -10.5 arginine repressor compare
HMPREF1058_RS10075 -6.9 -13.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS08850 -6.8 -8.1 N-acetyltransferase compare
HMPREF1058_RS14565 -6.7 -9.2 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS09585 -6.7 -16.2 argininosuccinate lyase compare
HMPREF1058_RS12115 -6.7 -11.2 acetylglutamate kinase compare
HMPREF1058_RS09675 -6.7 -5.9 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08835 -6.6 -9.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS12325 -6.5 -17.4 hypothetical protein compare
HMPREF1058_RS08325 -6.5 -6.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS11270 -6.5 -4.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS14545 -6.3 -9.7 2-isopropylmalate synthase compare
HMPREF1058_RS12105 -6.3 -5.8 shikimate kinase compare
HMPREF1058_RS12310 -6.3 -23.2 TonB-dependent receptor compare
HMPREF1058_RS12305 -6.2 -12.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS07190 -6.2 -4.3 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS14770 -6.2 -4.3 prephenate dehydrogenase compare
HMPREF1058_RS11040 -6.2 -4.3 polysaccharide deacetylase family protein compare
HMPREF1058_RS12320 -6.1 -8.4 glycoside hydrolase family 13 protein compare
HMPREF1058_RS14725 -6.1 -9.3 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS07170 -6.1 -5.9 tryptophan synthase subunit beta compare
HMPREF1058_RS08840 -6.0 -12.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08830 -6.0 -7.0 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS12780 -5.9 -12.0 M20 family metallo-hydrolase compare
HMPREF1058_RS14720 -5.7 -12.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08645 -5.7 -13.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14785 -5.7 -4.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14550 -5.7 -9.5 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14730 -5.7 -10.9 threonine synthase compare
HMPREF1058_RS08845 -5.7 -10.1 argininosuccinate synthase compare
HMPREF1058_RS14610 -5.7 -12.7 adenylosuccinate synthase compare
HMPREF1058_RS10820 -5.6 -17.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS15870 -5.6 -6.7 ATP phosphoribosyltransferase compare
HMPREF1058_RS10995 -5.5 -6.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS15880 -5.5 -6.6 histidinol-phosphate transaminase compare
HMPREF1058_RS14920 -5.5 -9.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS07175 -5.5 -7.6 anthranilate synthase component I family protein compare
HMPREF1058_RS08650 -5.5 -10.9 glutamate 5-kinase compare
HMPREF1058_RS10080 -5.5 -15.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS07185 -5.5 -6.5 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS00700 -5.5 -9.1 DUF4831 family protein compare
HMPREF1058_RS15075 -5.5 -11.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS11625 -5.5 -17.8 S41 family peptidase compare
HMPREF1058_RS08025 -5.5 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS11730 -5.4 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS02405 -5.4 -15.7 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS01450 -5.4 -3.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS14560 -5.4 -10.9 2-isopropylmalate synthase compare
HMPREF1058_RS06170 -5.4 -5.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS03000 -5.4 -7.3 IMP dehydrogenase compare
HMPREF1058_RS02410 -5.3 -12.5 methylmalonyl-CoA mutase compare
HMPREF1058_RS02110 -5.3 -14.6 NADP-dependent malic enzyme compare
HMPREF1058_RS08640 -5.3 -2.5 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07195 -5.3 -3.2 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS14795 -5.3 -5.1 prephenate dehydratase compare
HMPREF1058_RS15885 -5.3 -7.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS15875 -5.2 -6.3 histidinol dehydrogenase compare
HMPREF1058_RS13795 -5.2 -8.7 DUF4954 family protein compare
HMPREF1058_RS07200 -5.2 -8.7 tryptophan synthase subunit alpha compare
HMPREF1058_RS06175 -5.1 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS06195 -5.0 -4.8 diaminopimelate decarboxylase compare
HMPREF1058_RS14790 -4.9 -11.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS09685 -4.9 -13.5 tetratricopeptide repeat protein compare
HMPREF1058_RS13730 -4.8 -3.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS08535 -4.8 -3.0 elongation factor P compare
HMPREF1058_RS16815 -4.8 -10.7 dihydroxy-acid dehydratase compare
HMPREF1058_RS16760 -4.7 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS00590 -4.7 -3.3 hypothetical protein compare
HMPREF1058_RS13655 -4.7 -11.6 cardiolipin synthase compare
HMPREF1058_RS07040 -4.6 -9.9 tetratricopeptide repeat protein compare
HMPREF1058_RS16260 -4.6 -6.3 hotdog fold thioesterase compare
HMPREF1058_RS09690 -4.6 -12.3 DUF4369 domain-containing protein compare
HMPREF1058_RS15565 -4.5 -16.2 hypothetical protein compare
HMPREF1058_RS16825 -4.5 -9.6 acetolactate synthase small subunit compare
HMPREF1058_RS17045 -4.5 -3.1 hypothetical protein compare
HMPREF1058_RS00560 -4.5 -3.1 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS01460 -4.5 -2.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS07955 -4.5 -10.8 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS18050 -4.4 -2.2 DUF4492 domain-containing protein compare
HMPREF1058_RS14490 -4.4 -7.9 S9 family peptidase compare
HMPREF1058_RS16835 -4.4 -6.7 ketol-acid reductoisomerase compare
HMPREF1058_RS17775 -4.4 -5.2 hypothetical protein compare
HMPREF1058_RS07655 -4.4 -1.5 hypothetical protein compare
HMPREF1058_RS21475 -4.3 -1.1 smalltalk protein compare
HMPREF1058_RS06165 -4.3 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS16500 -4.3 -3.0 OadG family protein compare
HMPREF1058_RS17970 -4.3 -5.9 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS10955 -4.3 -8.2 phosphatase PAP2 family protein compare
HMPREF1058_RS16820 -4.2 -9.0 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS02170 -4.1 -4.0 hypothetical protein compare
HMPREF1058_RS17955 -4.1 -6.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS10850 -4.1 -12.6 glycosyltransferase family 2 protein compare
HMPREF1058_RS08275 -4.1 -14.1 DoxX family protein compare
HMPREF1058_RS10720 -4.1 -6.2 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS03800 -4.0 -5.5 serine hydroxymethyltransferase compare
HMPREF1058_RS02800 -3.9 -7.5 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS17035 -3.9 -7.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS15520 -3.9 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS02065 -3.9 -1.4 hypothetical protein compare
HMPREF1058_RS11490 -3.9 -5.2 redox-regulated ATPase YchF compare
HMPREF1058_RS10840 -3.8 -2.7 hypothetical protein compare
HMPREF1058_RS17975 -3.8 -7.1 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS05035 -3.8 -11.6 C69 family dipeptidase compare
HMPREF1058_RS17080 -3.8 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS17075 -3.7 -9.3 inositol-3-phosphate synthase compare
HMPREF1058_RS01655 -3.7 -5.7 DUF4296 domain-containing protein compare
HMPREF1058_RS19210 -3.7 -1.9 hypothetical protein compare
HMPREF1058_RS15435 -3.7 -8.9 hypothetical protein compare
HMPREF1058_RS14215 -3.7 -3.6 (d)CMP kinase compare
HMPREF1058_RS06160 -3.7 -6.6 formyltetrahydrofolate deformylase compare
HMPREF1058_RS10270 -3.6 -2.8 hypothetical protein compare
HMPREF1058_RS02115 -3.6 -11.8 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS05145 -3.6 -5.9 ATP-binding protein compare
HMPREF1058_RS01650 -3.5 -6.0 hypothetical protein compare
HMPREF1058_RS16855 -3.5 -0.9 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS09735 -3.5 -8.3 hypothetical protein compare
HMPREF1058_RS10835 -3.5 -6.7 UDP-galactopyranose mutase compare
HMPREF1058_RS08295 -3.5 -7.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS16255 -3.5 -9.2 isochorismate synthase compare
HMPREF1058_RS14035 -3.4 -1.9 hypothetical protein compare
HMPREF1058_RS17040 -3.4 -2.4 NTP transferase domain-containing protein compare
HMPREF1058_RS17960 -3.4 -6.6 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS02220 -3.4 -3.3 branched-chain amino acid aminotransferase compare
HMPREF1058_RS03295 -3.4 -1.2 sulfur carrier protein ThiS compare
HMPREF1058_RS17950 -3.4 -3.3 biotin synthase BioB compare
HMPREF1058_RS13635 -3.4 -3.3 gliding motility lipoprotein GldH compare
HMPREF1058_RS11915 -3.4 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05780 -3.4 -5.6 PD40 domain-containing protein compare
HMPREF1058_RS05620 -3.3 -3.0 HipA N-terminal domain-containing protein compare
HMPREF1058_RS03245 -3.3 -1.7 thiamine phosphate synthase compare
HMPREF1058_RS09745 -3.3 -10.9 glycosyltransferase compare
HMPREF1058_RS12575 -3.3 -14.2 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS06180 -3.3 -5.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS06460 -3.3 -2.5 hypothetical protein compare
HMPREF1058_RS17815 -3.3 -4.5 MFS transporter compare
HMPREF1058_RS15665 -3.3 -6.3 MFS transporter compare
HMPREF1058_RS07180 -3.2 -4.4 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS09730 -3.2 -9.0 LicD family protein compare
HMPREF1058_RS03265 -3.2 -9.6 2-iminoacetate synthase ThiH compare
HMPREF1058_RS16070 -3.2 -3.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS09750 -3.2 -6.0 glycosyltransferase compare
HMPREF1058_RS13910 -3.2 -5.2 nucleoside deaminase compare
HMPREF1058_RS06820 -3.2 -9.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS04375 -3.1 -5.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS13970 -3.1 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS03260 -3.1 -8.2 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS05520 -3.1 -0.8 DUF4357 domain-containing protein compare
HMPREF1058_RS17965 -3.1 -1.1 DUF452 family protein compare
HMPREF1058_RS06080 -3.1 -5.9 glutamine synthetase III compare
HMPREF1058_RS16730 -3.1 -2.1 chorismate synthase compare
HMPREF1058_RS03110 -3.1 -10.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS01745 -3.1 -2.1 PorT family protein compare
HMPREF1058_RS07635 -3.1 -2.6 50S ribosomal protein L9 compare
HMPREF1058_RS14205 -3.1 -7.3 6-phosphofructokinase compare
HMPREF1058_RS15395 -3.0 -2.0 dihydroorotase compare
HMPREF1058_RS16495 -3.0 -2.1 biotin/lipoyl-binding protein compare
HMPREF1058_RS12345 -3.0 -12.0 4-alpha-glucanotransferase compare
HMPREF1058_RS00525 -3.0 -4.3 DUF4290 domain-containing protein compare
HMPREF1058_RS09610 -3.0 -10.0 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS07575 -3.0 -4.6 MCE family protein compare
HMPREF1058_RS17050 -3.0 -5.4 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS06310 -3.0 -3.5 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS04295 -2.9 -2.0 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS04365 -2.9 -5.6 translocation/assembly module TamB compare
HMPREF1058_RS11205 -2.9 -1.4 radical SAM protein compare
HMPREF1058_RS16505 -2.9 -5.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06225 -2.9 -2.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS14555 -2.9 -2.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS01620 -2.9 -1.0 tRNA-Lys compare
HMPREF1058_RS12340 -2.9 -7.3 SLC45 family MFS transporter compare
HMPREF1058_RS05105 -2.9 -2.1 hypothetical protein compare
HMPREF1058_RS03910 -2.9 -4.4 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS12070 -2.8 -4.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS02075 -2.8 -6.7 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS17150 -2.8 -11.1 S41 family peptidase compare
HMPREF1058_RS18265 -2.8 -2.7 aspartate 1-decarboxylase compare
HMPREF1058_RS17945 -2.8 -5.7 hypothetical protein compare
HMPREF1058_RS03580 -2.8 -1.8 UpxY family transcription antiterminator compare
HMPREF1058_RS01640 -2.7 -8.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS04300 -2.7 -1.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS18575 -2.7 -4.5 YqgE/AlgH family protein compare
HMPREF1058_RS01705 -2.7 -1.5 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS11890 -2.7 -4.9 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS10970 -2.7 -9.9 ribonuclease R compare
HMPREF1058_RS05935 -2.7 -6.3 bifunctional nuclease family protein compare
HMPREF1058_RS14830 -2.7 -2.5 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS09590 -2.6 -7.2 hypothetical protein compare
HMPREF1058_RS16620 -2.6 -7.7 GGGtGRT protein compare
HMPREF1058_RS02070 -2.6 -12.8 efflux RND transporter permease subunit compare
HMPREF1058_RS05070 -2.6 -2.9 hypothetical protein compare
HMPREF1058_RS03430 -2.6 -0.9 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS03280 -2.6 -8.4 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS14160 -2.6 -2.6 hypothetical protein compare
HMPREF1058_RS01665 -2.6 -2.1 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS16755 -2.6 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS08065 -2.6 -8.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS10920 -2.6 -3.6 viroplasmin family protein compare
HMPREF1058_RS12795 -2.5 -4.2 CYTH domain-containing protein compare
HMPREF1058_RS03105 -2.5 -3.8 ABC transporter permease compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source beta-Cyclodextrin in Phocaeicola vulgatus CL09T03C04

For carbon source beta-Cyclodextrin across organisms