Experiment set13S75 for Rhodanobacter denitrificans FW104-10B01
R2A_PIPES pH 4
Group: pHMedia: R2A_PIPES, pH=4
Culturing: rhodanobacter_10B01_ML12, 96 well deep well block, Aerobic, at 23 (C), shaken=700 rpm
Growth: about 3.2 generations
By: Hans and Hira on 10-Jan-25
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate, 30 mM PIPES sesquisodium salt
Specific Phenotypes
For 30 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Oxidative stress | 2 |
| Cobalt-zinc-cadmium resistance | 1 |
| Peptidoglycan Biosynthesis | 1 |
| Type IV pilus | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Peptidoglycan biosynthesis
- Aminoacyl-tRNA biosynthesis
- Glutamate metabolism
- Alanine and aspartate metabolism
- Lysine degradation
- Biotin metabolism
- Biosynthesis of unsaturated fatty acids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: