Experiment set13S74 for Phocaeicola vulgatus CL09T03C04

Compare to:

Lentilan from mushroom 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS16500 -5.1 -3.5 OadG family protein compare
HMPREF1058_RS19210 -4.8 -3.3 hypothetical protein compare
HMPREF1058_RS00560 -4.8 -3.3 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS07655 -4.7 -2.5 hypothetical protein compare
HMPREF1058_RS15875 -4.2 -11.8 histidinol dehydrogenase compare
HMPREF1058_RS11730 -4.1 -2.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS08535 -4.0 -3.9 elongation factor P compare
HMPREF1058_RS07195 -4.0 -5.3 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS06195 -3.9 -11.9 diaminopimelate decarboxylase compare
HMPREF1058_RS16495 -3.8 -2.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS13970 -3.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS09675 -3.5 -6.3 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS16750 -3.5 -2.4 shikimate dehydrogenase compare
HMPREF1058_RS04080 -3.4 -2.4 AAA family ATPase compare
HMPREF1058_RS14215 -3.4 -4.6 (d)CMP kinase compare
HMPREF1058_RS17155 -3.4 -2.3 dCMP deaminase family protein compare
HMPREF1058_RS12310 -3.4 -18.8 TonB-dependent receptor compare
HMPREF1058_RS16505 -3.4 -7.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS15885 -3.4 -10.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS15870 -3.4 -6.6 ATP phosphoribosyltransferase compare
HMPREF1058_RS06170 -3.3 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS18940 -3.3 -2.0 hypothetical protein compare
HMPREF1058_RS12325 -3.3 -14.7 hypothetical protein compare
HMPREF1058_RS05140 -3.3 -2.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS12305 -3.3 -17.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15880 -3.3 -11.6 histidinol-phosphate transaminase compare
HMPREF1058_RS14035 -3.2 -3.0 hypothetical protein compare
HMPREF1058_RS14785 -3.1 -6.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS11205 -3.0 -2.1 radical SAM protein compare
HMPREF1058_RS04045 -3.0 -5.0 tetratricopeptide repeat protein compare
HMPREF1058_RS08640 -3.0 -4.4 acetylornithine carbamoyltransferase compare
HMPREF1058_RS17130 -3.0 -2.0 tetratricopeptide repeat protein compare
HMPREF1058_RS06175 -3.0 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS08830 -2.9 -8.2 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS17815 -2.8 -7.4 MFS transporter compare
HMPREF1058_RS02405 -2.8 -14.2 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS02170 -2.7 -7.7 hypothetical protein compare
HMPREF1058_RS04065 -2.6 -2.4 VWA domain-containing protein compare
HMPREF1058_RS07200 -2.6 -8.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS11270 -2.6 -10.2 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS18695 -2.5 -3.0 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS14590 -2.5 -1.7 AraC family transcriptional regulator compare
HMPREF1058_RS15265 -2.5 -4.1 queuosine precursor transporter compare
HMPREF1058_RS06190 -2.4 -4.9 aspartate kinase compare
HMPREF1058_RS04075 -2.4 -2.3 DUF58 domain-containing protein compare
HMPREF1058_RS14770 -2.4 -5.9 prephenate dehydrogenase compare
HMPREF1058_RS11490 -2.4 -4.5 redox-regulated ATPase YchF compare
HMPREF1058_RS16845 -2.4 -3.9 SurA N-terminal domain-containing protein compare
HMPREF1058_RS16510 -2.4 -3.2 methylmalonyl-CoA epimerase compare
HMPREF1058_RS16730 -2.4 -3.9 chorismate synthase compare
HMPREF1058_RS02410 -2.3 -13.3 methylmalonyl-CoA mutase compare
HMPREF1058_RS06180 -2.3 -4.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS16835 -2.3 -8.0 ketol-acid reductoisomerase compare
HMPREF1058_RS10075 -2.3 -11.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14790 -2.3 -10.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14565 -2.3 -10.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS16755 -2.3 -3.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS14200 -2.3 -11.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS14795 -2.2 -5.9 prephenate dehydratase compare
HMPREF1058_RS07190 -2.2 -5.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS12070 -2.2 -4.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS02220 -2.2 -4.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS05780 -2.2 -9.9 PD40 domain-containing protein compare
HMPREF1058_RS15665 -2.2 -5.9 MFS transporter compare
HMPREF1058_RS04070 -2.2 -3.3 hypothetical protein compare
HMPREF1058_RS10080 -2.1 -12.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS12105 -2.1 -2.5 shikimate kinase compare
HMPREF1058_RS11890 -2.1 -4.9 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS08295 -2.1 -7.2 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS14550 -2.1 -10.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14285 -2.0 -3.9 DUF5056 domain-containing protein compare
HMPREF1058_RS01745 -2.0 -5.2 PorT family protein compare
HMPREF1058_RS09745 -2.0 -8.3 glycosyltransferase compare
HMPREF1058_RS04050 -2.0 -2.7 protein BatD compare
HMPREF1058_RS12320 -2.0 -5.5 glycoside hydrolase family 13 protein compare
HMPREF1058_RS07170 -2.0 -7.6 tryptophan synthase subunit beta compare
HMPREF1058_RS15435 -2.0 -6.2 hypothetical protein compare
HMPREF1058_RS05615 -2.0 -1.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14490 -2.0 -9.9 S9 family peptidase compare
HMPREF1058_RS08650 -1.9 -6.0 glutamate 5-kinase compare
HMPREF1058_RS02755 -1.9 -2.3 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS16815 -1.9 -9.2 dihydroxy-acid dehydratase compare
HMPREF1058_RS12505 -1.9 -5.3 RNA polymerase factor sigma-54 compare
HMPREF1058_RS01800 -1.9 -4.4 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS08645 -1.9 -8.4 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS03085 -1.8 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS07175 -1.8 -8.4 anthranilate synthase component I family protein compare
HMPREF1058_RS01385 -1.8 -6.1 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS10720 -1.8 -6.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS11040 -1.8 -6.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS00700 -1.8 -7.6 DUF4831 family protein compare
HMPREF1058_RS09750 -1.7 -4.7 glycosyltransferase compare
HMPREF1058_RS01270 -1.7 -5.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS01550 -1.7 -7.2 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS07540 -1.7 -2.5 acetyltransferase compare
HMPREF1058_RS07185 -1.7 -5.3 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14545 -1.7 -6.4 2-isopropylmalate synthase compare
HMPREF1058_RS06330 -1.7 -3.4 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS14555 -1.7 -1.9 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06320 -1.7 -4.2 electron transport complex subunit RsxA compare
HMPREF1058_RS06335 -1.7 -7.6 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS11910 -1.7 -6.4 DEAD/DEAH box helicase compare
HMPREF1058_RS11380 -1.7 -5.1 DUF4271 domain-containing protein compare
HMPREF1058_RS01405 -1.6 -6.3 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS01570 -1.6 -5.0 ABC transporter substrate-binding protein compare
HMPREF1058_RS06350 -1.6 -5.0 SoxR reducing system RseC family protein compare
HMPREF1058_RS03075 -1.6 -3.7 DNA helicase RecQ compare
HMPREF1058_RS01275 -1.6 -6.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS10920 -1.6 -2.8 viroplasmin family protein compare
HMPREF1058_RS00590 -1.5 -3.6 hypothetical protein compare
HMPREF1058_RS00595 -1.5 -2.7 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS16820 -1.5 -6.1 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14725 -1.5 -7.4 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS18870 -1.5 -1.2 hypothetical protein compare
HMPREF1058_RS09585 -1.5 -9.3 argininosuccinate lyase compare
HMPREF1058_RS07440 -1.5 -6.0 aspartate--ammonia ligase compare
HMPREF1058_RS10840 -1.5 -2.0 hypothetical protein compare
HMPREF1058_RS03980 -1.5 -1.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS14560 -1.5 -6.9 2-isopropylmalate synthase compare
HMPREF1058_RS08845 -1.5 -6.1 argininosuccinate synthase compare
HMPREF1058_RS21550 -1.5 -1.8 hypothetical protein compare
HMPREF1058_RS03430 -1.4 -1.6 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS08840 -1.4 -6.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS12780 -1.4 -5.8 M20 family metallo-hydrolase compare
HMPREF1058_RS03755 -1.4 -5.8 DUF3078 domain-containing protein compare
HMPREF1058_RS04035 -1.4 -2.2 hypothetical protein compare
HMPREF1058_RS08855 -1.4 -6.3 arginine repressor compare
HMPREF1058_RS21475 -1.4 -1.2 smalltalk protein compare
HMPREF1058_RS05145 -1.4 -6.0 ATP-binding protein compare
HMPREF1058_RS19090 -1.4 -0.7 tRNA-Phe compare
HMPREF1058_RS10835 -1.4 -4.1 UDP-galactopyranose mutase compare
HMPREF1058_RS14505 -1.4 -3.4 mechanosensitive ion channel compare
HMPREF1058_RS13795 -1.4 -8.5 DUF4954 family protein compare
HMPREF1058_RS14720 -1.3 -8.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS04295 -1.3 -3.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06340 -1.3 -3.9 electron transport complex subunit RsxC compare
HMPREF1058_RS16070 -1.3 -5.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14605 -1.3 -3.9 transcriptional repressor compare
HMPREF1058_RS21380 -1.3 -2.4 hypothetical protein compare
HMPREF1058_RS06600 -1.3 -2.4 DedA family protein compare
HMPREF1058_RS02750 -1.3 -1.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS07180 -1.3 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS13910 -1.3 -2.6 nucleoside deaminase compare
HMPREF1058_RS01555 -1.2 -3.5 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS18050 -1.2 -1.7 DUF4492 domain-containing protein compare
HMPREF1058_RS17205 -1.2 -2.0 DUF4199 domain-containing protein compare
HMPREF1058_RS01540 -1.2 -4.2 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS21590 -1.2 -1.5 hypothetical protein compare
HMPREF1058_RS01280 -1.2 -3.0 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS09685 -1.2 -6.4 tetratricopeptide repeat protein compare
HMPREF1058_RS14730 -1.2 -5.6 threonine synthase compare
HMPREF1058_RS01565 -1.2 -4.7 iron ABC transporter permease compare
HMPREF1058_RS06165 -1.2 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS01390 -1.2 -2.1 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS08850 -1.2 -5.0 N-acetyltransferase compare
HMPREF1058_RS06225 -1.2 -2.3 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS12315 -1.2 -7.4 glycoside hydrolase family 97 protein compare
HMPREF1058_RS16825 -1.2 -5.2 acetolactate synthase small subunit compare
HMPREF1058_RS10270 -1.2 -3.1 hypothetical protein compare
HMPREF1058_RS14005 -1.2 -1.6 3-dehydroquinate synthase compare
HMPREF1058_RS11925 -1.2 -1.8 DUF2975 domain-containing protein compare
HMPREF1058_RS03910 -1.2 -4.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS01395 -1.1 -4.6 cobyric acid synthase compare
HMPREF1058_RS09185 -1.1 -2.2 DUF4252 domain-containing protein compare
HMPREF1058_RS13350 -1.1 -5.8 Trk system potassium transporter TrkA compare
HMPREF1058_RS04300 -1.1 -3.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS04370 -1.1 -3.5 agmatine deiminase family protein compare
HMPREF1058_RS12455 -1.1 -1.9 dUTP diphosphatase compare
HMPREF1058_RS09460 -1.1 -6.0 gamma carbonic anhydrase family protein compare
HMPREF1058_RS07040 -1.1 -6.2 tetratricopeptide repeat protein compare
HMPREF1058_RS08315 -1.1 -3.2 biopolymer transporter ExbD compare
HMPREF1058_RS01575 -1.1 -4.3 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS01075 -1.1 -1.2 site-specific integrase compare
HMPREF1058_RS07245 -1.1 -3.2 Rne/Rng family ribonuclease compare
HMPREF1058_RS09680 -1.1 -2.6 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS08310 -1.0 -5.5 TonB family protein compare
HMPREF1058_RS17940 -1.0 -3.9 alpha-amylase compare
HMPREF1058_RS06325 -1.0 -1.4 electron transport complex subunit E compare
HMPREF1058_RS03510 -1.0 -3.8 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS12115 -1.0 -5.0 acetylglutamate kinase compare
HMPREF1058_RS15390 -1.0 -2.8 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS13655 -1.0 -5.9 cardiolipin synthase compare
HMPREF1058_RS12300 -1.0 -3.8 SusE domain-containing protein compare
HMPREF1058_RS02975 -1.0 -2.6 hypothetical protein compare
HMPREF1058_RS06345 -1.0 -2.9 Fe-S cluster domain-containing protein compare
HMPREF1058_RS13730 -1.0 -2.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS06160 -1.0 -2.8 formyltetrahydrofolate deformylase compare
HMPREF1058_RS17385 -1.0 -2.3 DUF4248 domain-containing protein compare
HMPREF1058_RS06460 -1.0 -1.1 hypothetical protein compare
HMPREF1058_RS10285 -1.0 -3.0 hypothetical protein compare
HMPREF1058_RS12040 -1.0 -4.2 butyrate kinase compare
HMPREF1058_RS12110 -0.9 -5.9 biosynthetic arginine decarboxylase compare
HMPREF1058_RS15000 -0.9 -4.0 hypothetical protein compare
HMPREF1058_RS06560 -0.9 -3.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS21005 -0.9 -2.0 nitrous oxide-stimulated promoter family protein compare
HMPREF1058_RS14610 -0.9 -6.2 adenylosuccinate synthase compare
HMPREF1058_RS14305 -0.9 -2.0 DNA topoisomerase 3 compare
HMPREF1058_RS10970 -0.9 -4.4 ribonuclease R compare
HMPREF1058_RS03310 -0.9 -4.2 carboxynorspermidine decarboxylase compare
HMPREF1058_RS11915 -0.9 -1.2 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Lentilan from mushroom across organisms