Experiment set13S67 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
LRK54_RS01720 -4.1 -1.4 hydroxyacid dehydrogenase compare
LRK54_RS14670 -3.7 -2.5 NrsF family protein compare
LRK54_RS02710 -3.0 -1.4 pentapeptide MXKDX repeat protein compare
LRK54_RS05200 -2.8 -2.7 hypothetical protein compare
LRK54_RS12735 -2.8 -2.8 NAD-dependent epimerase/dehydratase family protein compare
LRK54_RS04305 -2.7 -2.6 shikimate kinase compare
LRK54_RS16155 -2.7 -1.8 folate-binding protein compare
LRK54_RS06785 -2.5 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS11565 -2.4 -2.4 anthranilate phosphoribosyltransferase compare
LRK54_RS02805 -2.3 -1.9 thioredoxin compare
LRK54_RS16940 -2.3 -2.2 RNA polymerase sigma factor RpoE compare
LRK54_RS05980 -2.3 -1.6 ATP-binding protein compare
LRK54_RS04585 -2.3 -5.6 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS05415 -2.2 -5.6 TetR/AcrR family transcriptional regulator compare
LRK54_RS00750 -2.2 -2.2 response regulator transcription factor compare
LRK54_RS05365 -2.2 -3.6 MarR family transcriptional regulator compare
LRK54_RS13395 -2.2 -3.9 methyl-accepting chemotaxis protein compare
LRK54_RS16150 -2.1 -2.1 cell wall hydrolase compare
LRK54_RS10660 -2.1 -1.5 DUF4156 domain-containing protein compare
LRK54_RS17270 -2.0 -2.4 DNA translocase FtsK compare
LRK54_RS16255 -2.0 -1.6 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS00085 -2.0 -1.4 tetratricopeptide repeat protein compare
LRK54_RS01280 -2.0 -1.3 MBL fold metallo-hydrolase compare
LRK54_RS07020 -1.9 -1.3 ABC transporter permease compare
LRK54_RS04720 -1.9 -5.4 phosphoribosylformylglycinamidine synthase compare
LRK54_RS11170 -1.9 -2.9 NADP-dependent malic enzyme compare
LRK54_RS17025 -1.9 -0.9 cold-shock protein compare
LRK54_RS05985 -1.9 -1.3 response regulator transcription factor compare
LRK54_RS03675 -1.8 -1.2 redox-regulated ATPase YchF compare
LRK54_RS11375 -1.7 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05655 -1.7 -1.2 ABC transporter permease compare
LRK54_RS00320 -1.7 -2.6 phosphoglycerate mutase compare
LRK54_RS17225 -1.7 -2.0 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS13760 -1.7 -6.2 trypsin-like peptidase domain-containing protein compare
LRK54_RS00670 -1.7 -3.6 OmpA family protein compare
LRK54_RS04590 -1.7 -2.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS03125 -1.7 -1.1 preprotein translocase subunit YajC compare
LRK54_RS04035 -1.7 -6.0 ATP-binding protein compare
LRK54_RS00305 -1.6 -6.0 asparagine synthase B compare
LRK54_RS00080 -1.6 -8.0 helix-turn-helix domain-containing protein compare
LRK54_RS16755 -1.6 -1.9 SurA N-terminal domain-containing protein compare
LRK54_RS05650 -1.6 -2.7 ABC transporter ATP-binding protein compare
LRK54_RS16655 -1.6 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS03290 -1.6 -1.6 RIP metalloprotease RseP compare
LRK54_RS12865 -1.6 -4.5 HPr(Ser) kinase/phosphatase compare
LRK54_RS01680 -1.6 -4.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS17505 -1.6 -3.0 preprotein translocase subunit SecG compare
LRK54_RS15165 -1.6 -2.7 enoyl-CoA hydratase-related protein compare
LRK54_RS06795 -1.6 -4.4 type II 3-dehydroquinate dehydratase compare
LRK54_RS15365 -1.5 -1.8 hypothetical protein compare
LRK54_RS10195 -1.5 -1.2 hypothetical protein compare
LRK54_RS14590 -1.5 -5.2 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02725 -1.5 -3.0 OsmC family protein compare
LRK54_RS06685 -1.5 -8.4 TolC family outer membrane protein compare
LRK54_RS05785 -1.5 -4.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS12460 -1.5 -1.4 hypothetical protein compare
LRK54_RS07215 -1.5 -3.6 cytochrome c4 compare
LRK54_RS17230 -1.5 -5.7 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS15035 -1.4 -4.0 M48 family metalloprotease compare
LRK54_RS16740 -1.4 -2.6 HU family DNA-binding protein compare
LRK54_RS04710 -1.4 -1.7 glycosyltransferase family 2 protein compare
LRK54_RS09155 -1.4 -3.5 SPOR domain-containing protein compare
LRK54_RS11290 -1.4 -1.3 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS16945 -1.4 -2.8 sigma-E factor negative regulatory protein compare
LRK54_RS00675 -1.3 -6.3 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS11560 -1.3 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS16360 -1.3 -0.9 NAD(+)--rifampin ADP-ribosyltransferase compare
LRK54_RS05665 -1.3 -2.5 dTDP-glucose 4,6-dehydratase compare
LRK54_RS05495 -1.3 -3.6 met regulon transcriptional regulator MetJ compare
LRK54_RS12855 -1.3 -3.4 PTS fructose transporter subunit IIA compare
LRK54_RS01800 -1.3 -2.1 dCTP deaminase compare
LRK54_RS16720 -1.3 -4.7 trigger factor compare
LRK54_RS07980 -1.3 -2.4 nitrogen regulation protein NR(I) compare
LRK54_RS05740 -1.2 -3.4 phosphoglycerate kinase compare
LRK54_RS06885 -1.2 -4.5 rhodanese-like domain-containing protein compare
LRK54_RS01685 -1.2 -5.7 tryptophan synthase subunit beta compare
LRK54_RS10760 -1.2 -2.5 DUF2249 domain-containing protein compare
LRK54_RS10150 -1.2 -1.1 DNA topoisomerase I compare
LRK54_RS14785 -1.2 -3.4 NADH:flavin oxidoreductase/NADH oxidase compare
LRK54_RS16730 -1.2 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS12945 -1.2 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06470 -1.2 -6.4 carboxy terminal-processing peptidase compare
LRK54_RS15650 -1.2 -2.4 AzlC family ABC transporter permease compare
LRK54_RS11175 -1.2 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS17215 -1.2 -1.6 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS00815 -1.1 -3.5 pseudouridine synthase compare
LRK54_RS05300 -1.1 -2.2 homoserine dehydrogenase compare
LRK54_RS07075 -1.1 -6.4 magnesium-translocating P-type ATPase compare
LRK54_RS02090 -1.1 -7.8 NAD-glutamate dehydrogenase compare
LRK54_RS02275 -1.1 -2.4 enoyl-CoA hydratase-related protein compare
LRK54_RS18050 -1.1 -6.7 lipopolysaccharide assembly protein LapB compare
LRK54_RS13830 -1.1 -4.6 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS06675 -1.1 -4.3 TetR/AcrR family transcriptional regulator compare
LRK54_RS05670 -1.1 -2.5 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS05535 -1.1 -3.1 glycosyltransferase family 2 protein compare
LRK54_RS08930 -1.1 -3.0 XRE family transcriptional regulator compare
LRK54_RS07005 -1.1 -5.5 spore coat protein U domain-containing protein compare
LRK54_RS10855 -1.1 -2.0 protein-export chaperone SecB compare
LRK54_RS04350 -1.1 -3.4 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS17205 -1.1 -2.6 heavy metal translocating P-type ATPase compare
LRK54_RS04625 -1.1 -6.0 serine hydroxymethyltransferase compare
LRK54_RS00695 -1.1 -2.7 methylisocitrate lyase compare
LRK54_RS04860 -1.1 -2.6 7-carboxy-7-deazaguanine synthase QueE compare
LRK54_RS16660 -1.1 -5.7 VTT domain-containing protein compare
LRK54_RS05550 -1.1 -1.4 FAD-binding protein compare
LRK54_RS15485 -1.1 -1.1 hypothetical protein compare
LRK54_RS02495 -1.1 -3.1 50S ribosomal protein L19 compare
LRK54_RS16815 -1.1 -1.9 hypothetical protein compare
LRK54_RS00430 -1.1 -1.2 NUDIX hydrolase compare
LRK54_RS00440 -1.0 -4.1 high frequency lysogenization protein HflD compare
LRK54_RS11570 -1.0 -2.2 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS02895 -1.0 -5.7 rhomboid family intramembrane serine protease compare
LRK54_RS04050 -1.0 -4.3 glycoside hydrolase compare
LRK54_RS12300 -1.0 -3.0 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS10355 -1.0 -1.8 threonine synthase compare
LRK54_RS06440 -1.0 -3.3 HAD family hydrolase compare
LRK54_RS16050 -1.0 -0.7 tetratricopeptide repeat protein compare
LRK54_RS13400 -1.0 -1.6 chemotaxis protein compare
LRK54_RS04995 -1.0 -2.0 LacI family DNA-binding transcriptional regulator compare
LRK54_RS16470 -1.0 -2.6 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS05440 -1.0 -4.3 hypothetical protein compare
LRK54_RS03710 -1.0 -4.3 tetratricopeptide repeat protein compare
LRK54_RS13425 -1.0 -2.2 flagellar basal-body rod protein FlgF compare
LRK54_RS08750 -1.0 -2.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS12860 -1.0 -2.6 RNase adapter RapZ compare
LRK54_RS17905 -1.0 -0.9 NfuA family Fe-S biogenesis protein compare
LRK54_RS02970 -1.0 -2.5 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS05660 -1.0 -4.9 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS10920 -1.0 -6.8 DEAD/DEAH box helicase compare
LRK54_RS12295 -1.0 -1.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS00565 -1.0 -1.3 RNA polymerase sigma factor compare
LRK54_RS02855 -1.0 -3.0 type I restriction-modification system subunit M compare
LRK54_RS14845 -0.9 -0.6 LysR family transcriptional regulator compare
LRK54_RS10305 -0.9 -1.4 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS15015 -0.9 -3.2 Ppx/GppA family phosphatase compare
LRK54_RS09805 -0.9 -3.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS18055 -0.9 -2.8 glycosyltransferase family 4 protein compare
LRK54_RS00620 -0.9 -4.7 FtsH protease activity modulator HflK compare
LRK54_RS15090 -0.9 -3.5 hypothetical protein compare
LRK54_RS00775 -0.9 -4.5 translational GTPase TypA compare
LRK54_RS05640 -0.9 -4.1 GDP-mannose 4,6-dehydratase compare
LRK54_RS15780 -0.9 -2.1 2'-5' RNA ligase family protein compare
LRK54_RS04450 -0.9 -3.0 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS02380 -0.9 -2.8 argininosuccinate lyase compare
LRK54_RS16010 -0.9 -2.2 ribonuclease D compare
LRK54_RS06170 -0.9 -2.1 prolyl oligopeptidase family serine peptidase compare
LRK54_RS00940 -0.9 -4.3 cupin domain-containing protein compare
LRK54_RS06875 -0.9 -0.6 YiiD C-terminal domain-containing protein compare
LRK54_RS05770 -0.9 -6.1 energy transducer TonB compare
LRK54_RS06030 -0.9 -1.8 phage baseplate assembly protein V compare
LRK54_RS05540 -0.9 -1.9 glycosyltransferase family 2 protein compare
LRK54_RS10510 -0.9 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK54_RS02070 -0.9 -2.9 acyl-CoA dehydrogenase family protein compare
LRK54_RS02535 -0.8 -3.0 50S ribosomal protein L9 compare
LRK54_RS12660 -0.8 -4.2 translocation/assembly module TamB domain-containing protein compare
LRK54_RS09655 -0.8 -2.2 6-carboxytetrahydropterin synthase QueD compare
LRK54_RS09485 -0.8 -2.5 TIGR04283 family arsenosugar biosynthesis glycosyltransferase compare
LRK54_RS01405 -0.8 -2.1 YdeI/OmpD-associated family protein compare
LRK54_RS13780 -0.8 -3.1 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS16955 -0.8 -5.0 translation elongation factor 4 compare
LRK54_RS05855 -0.8 -1.8 MarR family transcriptional regulator compare
LRK54_RS00630 -0.8 -4.3 RNA chaperone Hfq compare
LRK54_RS12975 -0.8 -2.8 hemolysin family protein compare
LRK54_RS14995 -0.8 -3.2 carbon storage regulator CsrA compare
LRK54_RS17895 -0.8 -4.2 RluA family pseudouridine synthase compare
LRK54_RS05500 -0.8 -1.0 hypothetical protein compare
LRK54_RS11520 -0.8 -2.1 transpeptidase compare
LRK54_RS12010 -0.8 -3.2 response regulator transcription factor compare
LRK54_RS04630 -0.8 -1.1 energy-dependent translational throttle protein EttA compare
LRK54_RS10170 -0.8 -6.4 YbaY family lipoprotein compare
LRK54_RS14825 -0.8 -2.5 protease HtpX compare
LRK54_RS10165 -0.8 -5.0 phosphoribosylamine--glycine ligase compare
LRK54_RS17210 -0.8 -1.7 hypothetical protein compare
LRK54_RS09865 -0.8 -0.6 CRISPR-associated endonuclease Cas2 compare
LRK54_RS09345 -0.8 -1.1 ATP-binding protein compare
LRK54_RS01020 -0.8 -3.8 pha synthase subunit protein compare
LRK54_RS06745 -0.8 -2.9 mitochondrial fission ELM1 family protein compare
LRK54_RS11975 -0.8 -2.5 SLC13 family permease compare
LRK54_RS12305 -0.8 -4.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS10845 -0.8 -3.0 50S ribosomal protein L33 compare
LRK54_RS15925 -0.8 -1.3 carboxymuconolactone decarboxylase family protein compare
LRK54_RS00615 -0.8 -3.4 protease modulator HflC compare
LRK54_RS04545 -0.8 -2.9 hemin uptake protein HemP compare
LRK54_RS11000 -0.8 -2.1 HutD family protein compare
LRK54_RS00690 -0.8 -4.5 2-methylcitrate synthase compare
LRK54_RS10640 -0.8 -1.5 SCP2 sterol-binding domain-containing protein compare
LRK54_RS15040 -0.7 -1.7 glutaredoxin 3 compare
LRK54_RS05400 -0.7 -1.9 DUF4442 domain-containing protein compare
LRK54_RS12145 -0.7 -3.2 PepSY domain-containing protein compare
LRK54_RS11450 -0.7 -3.9 transcriptional repressor AgaR compare
LRK54_RS05645 -0.7 -5.2 glycosyltransferase compare
LRK54_RS08895 -0.7 -1.5 hypothetical protein compare
LRK54_RS02175 -0.7 -3.6 exodeoxyribonuclease V subunit gamma compare
LRK54_RS07180 -0.7 -1.4 dethiobiotin synthase compare
LRK54_RS05110 -0.7 -0.4 glycosyltransferase family 4 protein compare
LRK54_RS00805 -0.7 -1.6 segregation/condensation protein A compare
LRK54_RS02470 -0.7 -1.5 YciI family protein compare
LRK54_RS17815 -0.7 -2.5 mercuric resistance transcriptional repressor protein MerD compare
LRK54_RS03830 -0.7 -2.2 NAD(P) transhydrogenase subunit alpha compare
LRK54_RS00245 -0.7 -3.5 translesion DNA synthesis-associated protein ImuA compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments