Experiment set13S67 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS11230 +1.6 1.7 universal stress protein compare
LRK54_RS17400 +1.6 2.5 hypothetical protein compare
LRK54_RS04100 +1.4 2.3 ATP-binding cassette domain-containing protein compare
LRK54_RS12055 +1.1 2.1 dipeptide epimerase compare
LRK54_RS02815 +1.1 1.6 hypothetical protein compare
LRK54_RS06820 +1.1 2.3 Fis family transcriptional regulator compare
LRK54_RS02865 +1.0 0.6 type II toxin-antitoxin system HicA family toxin compare
LRK54_RS01610 +1.0 1.5 ATP phosphoribosyltransferase compare
LRK54_RS07460 +1.0 1.2 hypothetical protein compare
LRK54_RS17160 +0.9 1.3 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS04365 +0.9 1.0 H-NS histone family protein compare
LRK54_RS14245 +0.9 1.4 hypothetical protein compare
LRK54_RS09725 +0.9 0.8 phosphopantetheine-binding protein compare
LRK54_RS06155 +0.9 0.7 cysteine dioxygenase compare
LRK54_RS07775 +0.8 2.7 MarR family transcriptional regulator compare
LRK54_RS00175 +0.8 0.9 transposase compare
LRK54_RS17850 +0.8 2.8 DUF2282 domain-containing protein compare
LRK54_RS13475 +0.8 2.0 flagellar protein FliT compare
LRK54_RS14580 +0.8 0.8 hypothetical protein compare
LRK54_RS07515 +0.8 3.0 tryptophan-rich sensory protein compare
LRK54_RS15555 +0.7 2.0 YciI family protein compare
LRK54_RS07275 +0.7 3.4 dihydrofolate reductase family protein compare
LRK54_RS02295 +0.7 2.3 NUDIX domain-containing protein compare
LRK54_RS07495 +0.7 2.3 hypothetical protein compare
LRK54_RS14800 +0.7 0.8 cytochrome c compare
LRK54_RS12920 +0.7 2.2 hypothetical protein compare
LRK54_RS04370 +0.7 2.2 threonine/serine exporter family protein compare
LRK54_RS13895 +0.7 1.4 putative zinc-binding protein compare
LRK54_RS14490 +0.7 1.3 ABC transporter ATP-binding protein compare
LRK54_RS06255 +0.7 1.8 YbaN family protein compare
LRK54_RS17060 +0.7 1.5 RidA family protein compare
LRK54_RS17370 +0.7 1.1 hypothetical protein compare
LRK54_RS17220 +0.7 1.2 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS13790 +0.7 0.7 DUF3301 domain-containing protein compare
LRK54_RS17835 +0.7 2.0 mercuric ion transporter MerT compare
LRK54_RS17080 +0.7 1.7 hypothetical protein compare
LRK54_RS05695 +0.6 1.5 host attachment protein compare
LRK54_RS15360 +0.6 2.4 arginase family protein compare
LRK54_RS01925 +0.6 1.6 TolC family protein compare
LRK54_RS08885 +0.6 2.4 hypothetical protein compare
LRK54_RS06420 +0.6 0.8 hypothetical protein compare
LRK54_RS07430 +0.6 1.8 nuclear transport factor 2 family protein compare
LRK54_RS14675 +0.6 2.4 YajQ family cyclic di-GMP-binding protein compare
LRK54_RS14480 +0.6 2.4 response regulator transcription factor compare
LRK54_RS00875 +0.6 2.3 hypothetical protein compare
LRK54_RS04940 +0.6 1.9 zinc ribbon domain-containing protein compare
LRK54_RS06240 +0.6 0.9 hypothetical protein compare
LRK54_RS02720 +0.6 2.7 N-acetyltransferase compare
LRK54_RS05350 +0.6 1.9 manganese efflux pump MntP family protein compare
LRK54_RS14055 +0.6 1.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
LRK54_RS16800 +0.6 2.1 hypothetical protein compare
LRK54_RS06515 +0.6 1.4 rod shape-determining protein MreD compare
LRK54_RS02695 +0.6 1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS16295 +0.6 3.8 DNA-3-methyladenine glycosylase 2 compare
LRK54_RS06725 +0.6 2.4 zinc-finger domain-containing protein compare
LRK54_RS10720 +0.6 2.6 DUF2269 domain-containing protein compare
LRK54_RS01515 +0.6 2.6 NUDIX hydrolase compare
LRK54_RS14745 +0.6 2.7 peptidylprolyl isomerase compare
LRK54_RS10045 +0.6 2.8 TIGR03862 family flavoprotein compare
LRK54_RS09455 +0.6 1.6 RNA polymerase sigma factor compare
LRK54_RS10830 +0.6 1.9 ABC transporter permease compare
LRK54_RS06915 +0.6 1.9 hypothetical protein compare
LRK54_RS14160 +0.6 1.4 cytochrome c compare
LRK54_RS17660 +0.5 1.4 hypothetical protein compare
LRK54_RS09420 +0.5 1.1 RNA polymerase sigma factor compare
LRK54_RS12850 +0.5 1.5 HPr family phosphocarrier protein compare
LRK54_RS13560 +0.5 3.5 flagellar biosynthesis protein FlhB compare
LRK54_RS04895 +0.5 1.8 tol-pal system-associated acyl-CoA thioesterase compare
LRK54_RS10540 +0.5 1.4 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS16575 +0.5 4.6 GGDEF domain-containing phosphodiesterase compare
LRK54_RS05805 +0.5 0.9 thiol peroxidase compare
LRK54_RS01910 +0.5 1.1 hypothetical protein compare
LRK54_RS13030 +0.5 2.4 GFA family protein compare
LRK54_RS05900 +0.5 1.4 VOC family protein compare
LRK54_RS13410 +0.5 2.4 flagellar basal body rod protein FlgC compare
LRK54_RS06100 +0.5 1.7 hypothetical protein compare
LRK54_RS12995 +0.5 0.7 MGMT family protein compare
LRK54_RS13435 +0.5 2.0 flagellar basal body L-ring protein FlgH compare
LRK54_RS05295 +0.5 2.1 YceI family protein compare
LRK54_RS09950 +0.5 1.7 pseudouridine synthase compare
LRK54_RS05035 +0.5 2.5 response regulator compare
LRK54_RS00810 +0.5 1.1 SMC-Scp complex subunit ScpB compare
LRK54_RS10485 +0.5 1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS00410 +0.5 1.1 polyhydroxyalkanoic acid system family protein compare
LRK54_RS11925 +0.5 1.2 fumarylacetoacetate hydrolase family protein compare
LRK54_RS17560 +0.5 1.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS12415 +0.5 1.7 hypothetical protein compare
LRK54_RS11615 +0.5 1.3 FHA domain-containing protein compare
LRK54_RS04255 +0.5 2.5 type IV pilus twitching motility protein PilT compare
LRK54_RS15500 +0.5 1.0 hypothetical protein compare
LRK54_RS15915 +0.5 2.5 RluA family pseudouridine synthase compare
LRK54_RS08605 +0.5 2.2 hypothetical protein compare
LRK54_RS09505 +0.5 2.2 RNA polymerase sigma factor compare
LRK54_RS13200 +0.5 2.4 glycoside hydrolase family 127 protein compare
LRK54_RS05235 +0.5 2.0 cytochrome b compare
LRK54_RS02700 +0.5 1.8 ribosome silencing factor compare
LRK54_RS15080 +0.5 1.1 glycine cleavage system protein R compare
LRK54_RS14635 +0.4 2.3 LysE family translocator compare
LRK54_RS03700 +0.4 1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK54_RS09165 +0.4 2.3 DNA repair protein RadC compare
LRK54_RS05490 +0.4 1.8 energy transducer TonB compare
LRK54_RS13675 +0.4 0.6 methyl-accepting chemotaxis protein compare
LRK54_RS10500 +0.4 0.8 glycerophosphodiester phosphodiesterase compare
LRK54_RS02260 +0.4 2.1 hypothetical protein compare
LRK54_RS12905 +0.4 1.8 BolA/IbaG family iron-sulfur metabolism protein compare
LRK54_RS06900 +0.4 2.1 serine/threonine protein kinase compare
LRK54_RS07950 +0.4 1.3 GIY-YIG nuclease family protein compare
LRK54_RS00120 +0.4 2.1 glyoxalase/bleomycin resistance/dioxygenase family protein compare
LRK54_RS11395 +0.4 1.7 proteobacterial dedicated sortase system response regulator compare
LRK54_RS13620 +0.4 0.7 hypothetical protein compare
LRK54_RS03920 +0.4 0.5 hypothetical protein compare
LRK54_RS15665 +0.4 1.3 SCO family protein compare
LRK54_RS16310 +0.4 1.6 response regulator compare
LRK54_RS16810 +0.4 0.7 hypothetical protein compare
LRK54_RS06300 +0.4 1.6 GNAT family N-acetyltransferase compare
LRK54_RS12085 +0.4 1.8 ABC transporter ATP-binding protein compare
LRK54_RS11860 +0.4 1.7 MoxR family ATPase compare
LRK54_RS11510 +0.4 2.1 dipeptide epimerase compare
LRK54_RS13650 +0.4 1.6 chemotaxis protein CheW compare
LRK54_RS02850 +0.4 2.5 AAA family ATPase compare
LRK54_RS13445 +0.4 1.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
LRK54_RS12575 +0.4 2.0 carboxymuconolactone decarboxylase family protein compare
LRK54_RS05360 +0.4 2.1 DUF6516 family protein compare
LRK54_RS14345 +0.4 1.8 SDR family oxidoreductase compare
LRK54_RS12405 +0.4 2.0 hypothetical protein compare
LRK54_RS17120 +0.4 1.8 zinc-binding dehydrogenase compare
LRK54_RS10005 +0.4 1.4 general secretion pathway protein GspN compare
LRK54_RS05195 +0.4 1.0 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS14390 +0.4 1.7 YciI family protein compare
LRK54_RS08075 +0.4 1.8 hypothetical protein compare
LRK54_RS01820 +0.4 2.1 DeoR/GlpR family DNA-binding transcription regulator compare
LRK54_RS14320 +0.4 2.5 penicillin acylase family protein compare
LRK54_RS16375 +0.4 2.7 cytochrome b compare
LRK54_RS05305 +0.4 2.2 cystathionine gamma-synthase compare
LRK54_RS00880 +0.4 2.6 PDZ domain-containing protein compare
LRK54_RS11310 +0.4 1.7 hypothetical protein compare
LRK54_RS06045 +0.4 2.0 hypothetical protein compare
LRK54_RS05580 +0.4 1.0 hypothetical protein compare
LRK54_RS17845 +0.4 1.9 DUF692 domain-containing protein compare
LRK54_RS05060 +0.4 0.8 carbohydrate kinase compare
LRK54_RS16635 +0.4 1.9 magnesium transporter compare
LRK54_RS16530 +0.4 1.5 aldehyde reductase compare
LRK54_RS01245 +0.4 1.9 histidine triad nucleotide-binding protein compare
LRK54_RS08945 +0.4 2.0 hypothetical protein compare
LRK54_RS10645 +0.4 1.2 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
LRK54_RS02490 +0.4 2.8 EAL domain-containing protein compare
LRK54_RS06425 +0.4 0.6 ribonucleoside-diphosphate reductase compare
LRK54_RS05280 +0.4 2.4 DEAD/DEAH box helicase family protein compare
LRK54_RS14535 +0.4 1.3 hypothetical protein compare
LRK54_RS15520 +0.4 1.6 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS10280 +0.4 1.2 PspC domain-containing protein compare
LRK54_RS14475 +0.4 2.7 sensor histidine kinase compare
LRK54_RS07750 +0.4 1.4 DUF302 domain-containing protein compare
LRK54_RS04960 +0.4 1.5 peptidoglycan editing factor PgeF compare
LRK54_RS15480 +0.4 2.7 peroxiredoxin compare
LRK54_RS04070 +0.4 1.6 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS08000 +0.4 1.3 DsbA family protein compare
LRK54_RS02055 +0.4 2.0 glutathione S-transferase family protein compare
LRK54_RS09185 +0.4 2.8 DUF4124 domain-containing protein compare
LRK54_RS00915 +0.4 1.9 LysR substrate-binding domain-containing protein compare
LRK54_RS17105 +0.4 1.9 PepSY domain-containing protein compare
LRK54_RS06185 +0.4 1.7 CPXCG motif-containing cysteine-rich protein compare
LRK54_RS02025 +0.4 1.3 VOC family protein compare
LRK54_RS16645 +0.4 1.0 Smr/MutS family protein compare
LRK54_RS07125 +0.4 2.7 cytochrome c oxidase subunit II compare
LRK54_RS03730 +0.4 0.7 acylphosphatase compare
LRK54_RS03070 +0.4 1.7 2-dehydropantoate 2-reductase compare
LRK54_RS16370 +0.4 2.2 dihydrofolate reductase family protein compare
LRK54_RS10815 +0.3 1.7 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase compare
LRK54_RS12745 +0.3 1.5 tetratricopeptide repeat protein compare
LRK54_RS05335 +0.3 1.8 shikimate kinase compare
LRK54_RS15720 +0.3 0.3 ATP-binding cassette domain-containing protein compare
LRK54_RS01625 +0.3 1.1 30S ribosomal protein THX compare
LRK54_RS01220 +0.3 1.3 AAA family ATPase compare
LRK54_RS07320 +0.3 1.7 D-aminoacyl-tRNA deacylase compare
LRK54_RS02585 +0.3 1.7 Rid family hydrolase compare
LRK54_RS11305 +0.3 1.4 hypothetical protein compare
LRK54_RS09180 +0.3 3.1 phosphomannomutase/phosphoglucomutase compare
LRK54_RS01805 +0.3 1.5 NAD(P)H-dependent oxidoreductase compare
LRK54_RS00255 +0.3 2.4 peptide-methionine (R)-S-oxide reductase MsrB compare
LRK54_RS01930 +0.3 1.0 hypothetical protein compare
LRK54_RS09090 +0.3 2.3 GGDEF and EAL domain-containing protein compare
LRK54_RS15215 +0.3 1.1 DUF2059 domain-containing protein compare
LRK54_RS02405 +0.3 1.4 OsmC family protein compare
LRK54_RS13415 +0.3 1.5 flagellar hook capping protein compare
LRK54_RS12535 +0.3 1.8 hypothetical protein compare
LRK54_RS14805 +0.3 1.5 tRNA threonylcarbamoyladenosine dehydratase compare
LRK54_RS15785 +0.3 1.5 cupin domain-containing protein compare
LRK54_RS17090 +0.3 1.0 isochorismatase family protein compare
LRK54_RS03985 +0.3 1.6 TIGR00266 family protein compare
LRK54_RS13665 +0.3 1.2 chemoreceptor glutamine deamidase CheD compare
LRK54_RS04340 +0.3 1.4 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS16460 +0.3 1.4 hypothetical protein compare
LRK54_RS11980 +0.3 1.6 DUF559 domain-containing protein compare
LRK54_RS13805 +0.3 1.1 hypothetical protein compare
LRK54_RS05330 +0.3 1.4 aminopeptidase P family protein compare
LRK54_RS03855 +0.3 1.5 cytidine deaminase compare
LRK54_RS04655 +0.3 1.0 peptide deformylase compare
LRK54_RS04735 +0.3 2.1 site-specific tyrosine recombinase XerD compare
LRK54_RS14610 +0.3 2.1 DUF6491 family protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments