Experiment set13S64 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
LRK54_RS06785 -3.6 -2.5 protein-disulfide reductase DsbD compare
LRK54_RS05980 -3.1 -4.2 ATP-binding protein compare
LRK54_RS00085 -3.1 -2.1 tetratricopeptide repeat protein compare
LRK54_RS17505 -3.0 -4.8 preprotein translocase subunit SecG compare
LRK54_RS05985 -2.9 -2.0 response regulator transcription factor compare
LRK54_RS05655 -2.6 -2.6 ABC transporter permease compare
LRK54_RS16940 -2.6 -6.9 RNA polymerase sigma factor RpoE compare
LRK54_RS03290 -2.6 -3.0 RIP metalloprotease RseP compare
LRK54_RS17225 -2.5 -4.1 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS11290 -2.5 -2.4 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS16730 -2.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00080 -2.1 -10.2 helix-turn-helix domain-containing protein compare
LRK54_RS00670 -2.1 -7.4 OmpA family protein compare
LRK54_RS07020 -2.1 -2.4 ABC transporter permease compare
LRK54_RS05415 -2.1 -10.5 TetR/AcrR family transcriptional regulator compare
LRK54_RS11170 -2.1 -6.3 NADP-dependent malic enzyme compare
LRK54_RS01280 -2.0 -3.0 MBL fold metallo-hydrolase compare
LRK54_RS12860 -2.0 -5.7 RNase adapter RapZ compare
LRK54_RS05665 -2.0 -4.7 dTDP-glucose 4,6-dehydratase compare
LRK54_RS04585 -2.0 -7.9 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS17230 -1.9 -10.3 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS15035 -1.9 -7.9 M48 family metalloprotease compare
LRK54_RS16755 -1.9 -5.3 SurA N-terminal domain-containing protein compare
LRK54_RS12460 -1.9 -3.6 hypothetical protein compare
LRK54_RS00305 -1.8 -10.8 asparagine synthase B compare
LRK54_RS03675 -1.8 -2.0 redox-regulated ATPase YchF compare
LRK54_RS17215 -1.7 -3.6 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS06675 -1.7 -8.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS04720 -1.7 -8.3 phosphoribosylformylglycinamidine synthase compare
LRK54_RS13760 -1.7 -7.5 trypsin-like peptidase domain-containing protein compare
LRK54_RS11375 -1.7 -7.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS07215 -1.7 -6.9 cytochrome c4 compare
LRK54_RS04710 -1.6 -3.1 glycosyltransferase family 2 protein compare
LRK54_RS03125 -1.6 -2.5 preprotein translocase subunit YajC compare
LRK54_RS11175 -1.6 -6.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS05200 -1.6 -4.0 hypothetical protein compare
LRK54_RS00675 -1.5 -9.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS17205 -1.5 -4.9 heavy metal translocating P-type ATPase compare
LRK54_RS12865 -1.5 -7.0 HPr(Ser) kinase/phosphatase compare
LRK54_RS00805 -1.5 -4.0 segregation/condensation protein A compare
LRK54_RS05650 -1.5 -5.3 ABC transporter ATP-binding protein compare
LRK54_RS04100 -1.5 -2.2 ATP-binding cassette domain-containing protein compare
LRK54_RS06685 -1.4 -10.3 TolC family outer membrane protein compare
LRK54_RS02855 -1.4 -5.7 type I restriction-modification system subunit M compare
LRK54_RS00440 -1.4 -6.8 high frequency lysogenization protein HflD compare
LRK54_RS12855 -1.4 -3.8 PTS fructose transporter subunit IIA compare
LRK54_RS17270 -1.4 -4.2 DNA translocase FtsK compare
LRK54_RS05785 -1.4 -6.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS00695 -1.3 -4.8 methylisocitrate lyase compare
LRK54_RS16615 -1.3 -1.7 phosphopyruvate hydratase compare
LRK54_RS00635 -1.3 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS14845 -1.3 -1.5 LysR family transcriptional regulator compare
LRK54_RS16155 -1.3 -1.7 folate-binding protein compare
LRK54_RS02275 -1.3 -4.4 enoyl-CoA hydratase-related protein compare
LRK54_RS05550 -1.2 -2.4 FAD-binding protein compare
LRK54_RS00775 -1.2 -7.9 translational GTPase TypA compare
LRK54_RS00815 -1.2 -5.0 pseudouridine synthase compare
LRK54_RS05535 -1.2 -5.1 glycosyltransferase family 2 protein compare
LRK54_RS12010 -1.2 -6.1 response regulator transcription factor compare
LRK54_RS05670 -1.2 -4.5 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS16945 -1.2 -3.5 sigma-E factor negative regulatory protein compare
LRK54_RS02495 -1.1 -4.9 50S ribosomal protein L19 compare
LRK54_RS01685 -1.1 -7.4 tryptophan synthase subunit beta compare
LRK54_RS10855 -1.1 -2.9 protein-export chaperone SecB compare
LRK54_RS11560 -1.1 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS14590 -1.1 -5.6 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS00620 -1.1 -7.0 FtsH protease activity modulator HflK compare
LRK54_RS04140 -1.1 -4.5 inositol-phosphate phosphatase compare
LRK54_RS02895 -1.0 -6.8 rhomboid family intramembrane serine protease compare
LRK54_RS00615 -1.0 -5.7 protease modulator HflC compare
LRK54_RS07980 -1.0 -2.3 nitrogen regulation protein NR(I) compare
LRK54_RS16970 -1.0 -2.7 ribonuclease III compare
LRK54_RS12945 -1.0 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS10640 -1.0 -2.3 SCP2 sterol-binding domain-containing protein compare
LRK54_RS07075 -1.0 -6.9 magnesium-translocating P-type ATPase compare
LRK54_RS09805 -1.0 -4.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS05740 -1.0 -4.5 phosphoglycerate kinase compare
LRK54_RS12295 -1.0 -2.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS02090 -1.0 -7.8 NAD-glutamate dehydrogenase compare
LRK54_RS04630 -1.0 -1.7 energy-dependent translational throttle protein EttA compare
LRK54_RS04625 -1.0 -6.5 serine hydroxymethyltransferase compare
LRK54_RS02535 -1.0 -4.3 50S ribosomal protein L9 compare
LRK54_RS11570 -1.0 -2.9 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS14800 -0.9 -1.7 cytochrome c compare
LRK54_RS10150 -0.9 -1.3 DNA topoisomerase I compare
LRK54_RS04050 -0.9 -5.1 glycoside hydrolase compare
LRK54_RS06885 -0.9 -4.9 rhodanese-like domain-containing protein compare
LRK54_RS06795 -0.9 -4.2 type II 3-dehydroquinate dehydratase compare
LRK54_RS16740 -0.9 -1.9 HU family DNA-binding protein compare
LRK54_RS18055 -0.9 -3.8 glycosyltransferase family 4 protein compare
LRK54_RS14995 -0.9 -4.6 carbon storage regulator CsrA compare
LRK54_RS10740 -0.9 -2.7 Lrp/AsnC family transcriptional regulator compare
LRK54_RS04185 -0.9 -1.5 chemotaxis protein CheW compare
LRK54_RS16150 -0.9 -1.5 cell wall hydrolase compare
LRK54_RS16720 -0.9 -4.4 trigger factor compare
LRK54_RS14465 -0.9 -3.6 septum site-determining protein MinC compare
LRK54_RS13890 -0.9 -2.0 hypothetical protein compare
LRK54_RS01680 -0.9 -3.8 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS01800 -0.9 -2.1 dCTP deaminase compare
LRK54_RS00565 -0.9 -2.0 RNA polymerase sigma factor compare
LRK54_RS18050 -0.9 -6.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS05770 -0.8 -6.7 energy transducer TonB compare
LRK54_RS05540 -0.8 -2.8 glycosyltransferase family 2 protein compare
LRK54_RS06420 -0.8 -1.2 hypothetical protein compare
LRK54_RS10355 -0.8 -1.6 threonine synthase compare
LRK54_RS12660 -0.8 -4.7 translocation/assembly module TamB domain-containing protein compare
LRK54_RS10920 -0.8 -6.7 DEAD/DEAH box helicase compare
LRK54_RS04350 -0.8 -3.5 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS04025 -0.8 -0.9 diacylglycerol kinase compare
LRK54_RS03710 -0.8 -4.6 tetratricopeptide repeat protein compare
LRK54_RS10065 -0.8 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS01720 -0.8 -0.9 hydroxyacid dehydrogenase compare
LRK54_RS11820 -0.8 -5.8 citrate synthase compare
LRK54_RS10330 -0.8 -1.5 3-isopropylmalate dehydratase small subunit compare
LRK54_RS14560 -0.8 -5.2 hypothetical protein compare
LRK54_RS12300 -0.8 -2.8 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS04820 -0.7 -0.7 GspH/FimT family pseudopilin compare
LRK54_RS11415 -0.7 -5.5 anthranilate synthase component I compare
LRK54_RS12830 -0.7 -3.6 YeiH family protein compare
LRK54_RS10170 -0.7 -6.6 YbaY family lipoprotein compare
LRK54_RS13675 -0.7 -1.2 methyl-accepting chemotaxis protein compare
LRK54_RS16955 -0.7 -5.2 translation elongation factor 4 compare
LRK54_RS10195 -0.7 -1.3 hypothetical protein compare
LRK54_RS11975 -0.7 -3.2 SLC13 family permease compare
LRK54_RS12580 -0.7 -2.1 hypothetical protein compare
LRK54_RS03405 -0.7 -4.6 ribonuclease G compare
LRK54_RS06895 -0.7 -1.5 hotdog fold thioesterase compare
LRK54_RS15105 -0.7 -2.9 polynucleotide adenylyltransferase PcnB compare
LRK54_RS06470 -0.7 -4.9 carboxy terminal-processing peptidase compare
LRK54_RS05495 -0.7 -2.1 met regulon transcriptional regulator MetJ compare
LRK54_RS10845 -0.7 -3.5 50S ribosomal protein L33 compare
LRK54_RS03895 -0.7 -5.4 lipopolysaccharide biosynthesis protein compare
LRK54_RS05440 -0.7 -4.0 hypothetical protein compare
LRK54_RS12985 -0.7 -3.3 inorganic phosphate transporter compare
LRK54_RS08775 -0.6 -1.1 GNAT family N-acetyltransferase compare
LRK54_RS00400 -0.6 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS01520 -0.6 -5.2 amino acid permease compare
LRK54_RS07220 -0.6 -3.8 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS15025 -0.6 -2.7 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS00435 -0.6 -5.1 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS16660 -0.6 -4.3 VTT domain-containing protein compare
LRK54_RS04035 -0.6 -3.5 ATP-binding protein compare
LRK54_RS06495 -0.6 -4.6 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS00630 -0.6 -3.8 RNA chaperone Hfq compare
LRK54_RS08930 -0.6 -1.9 XRE family transcriptional regulator compare
LRK54_RS07460 -0.6 -1.2 hypothetical protein compare
LRK54_RS02945 -0.6 -3.5 response regulator compare
LRK54_RS04450 -0.6 -3.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS18060 -0.6 -2.5 polysaccharide biosynthesis protein compare
LRK54_RS14460 -0.6 -3.5 septum site-determining protein MinD compare
LRK54_RS02325 -0.6 -1.9 SDR family oxidoreductase compare
LRK54_RS04615 -0.6 -2.3 transcriptional regulator NrdR compare
LRK54_RS02285 -0.6 -4.2 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS11565 -0.6 -1.6 anthranilate phosphoribosyltransferase compare
LRK54_RS00940 -0.6 -3.8 cupin domain-containing protein compare
LRK54_RS02440 -0.6 -1.7 RNA polymerase-binding protein DksA compare
LRK54_RS05645 -0.6 -4.8 glycosyltransferase compare
LRK54_RS15015 -0.6 -2.6 Ppx/GppA family phosphatase compare
LRK54_RS02365 -0.6 -1.5 ABC transporter ATP-binding protein compare
LRK54_RS01395 -0.6 -0.4 arsenate reductase ArsC compare
LRK54_RS07005 -0.6 -3.9 spore coat protein U domain-containing protein compare
LRK54_RS17760 -0.6 -1.4 cation transporter compare
LRK54_RS04655 -0.5 -2.5 peptide deformylase compare
LRK54_RS03960 -0.5 -2.5 A24 family peptidase compare
LRK54_RS13830 -0.5 -3.1 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS16655 -0.5 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS02475 -0.5 -4.4 TRZ/ATZ family hydrolase compare
LRK54_RS03040 -0.5 -1.9 MtnX-like HAD-IB family phosphatase compare
LRK54_RS07060 -0.5 -3.2 DedA family protein compare
LRK54_RS17160 -0.5 -0.8 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS01910 -0.5 -1.7 hypothetical protein compare
LRK54_RS09125 -0.5 -2.2 hypothetical protein compare
LRK54_RS16815 -0.5 -1.8 hypothetical protein compare
LRK54_RS03015 -0.5 -3.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS09820 -0.5 -4.3 cell division protein ZapE compare
LRK54_RS09175 -0.5 -2.9 dUTP diphosphatase compare
LRK54_RS05660 -0.5 -3.4 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS03200 -0.5 -2.6 integration host factor subunit alpha compare
LRK54_RS09455 -0.5 -1.6 RNA polymerase sigma factor compare
LRK54_RS10555 -0.5 -2.3 GIY-YIG nuclease family protein compare
LRK54_RS04925 -0.5 -1.9 alpha/beta hydrolase compare
LRK54_RS05630 -0.5 -2.5 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS16650 -0.5 -2.6 5'/3'-nucleotidase SurE compare
LRK54_RS13540 -0.5 -1.0 flagellar biosynthetic protein FliO compare
LRK54_RS13620 -0.5 -1.4 hypothetical protein compare
LRK54_RS00935 -0.5 -3.1 sulfite exporter TauE/SafE family protein compare
LRK54_RS16190 -0.5 -1.7 hypothetical protein compare
LRK54_RS16930 -0.5 -3.2 hypothetical protein compare
LRK54_RS00420 -0.5 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS11700 -0.5 -1.1 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS06745 -0.5 -2.5 mitochondrial fission ELM1 family protein compare
LRK54_RS13105 -0.5 -1.1 FHA domain-containing protein compare
LRK54_RS02185 -0.5 -1.3 exodeoxyribonuclease V subunit alpha compare
LRK54_RS04920 -0.5 -2.8 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS13625 -0.5 -1.2 flagellar hook-length control protein FliK compare
LRK54_RS00395 -0.4 -1.1 prephenate dehydratase compare
LRK54_RS17815 -0.4 -2.2 mercuric resistance transcriptional repressor protein MerD compare
LRK54_RS12015 -0.4 -3.4 HAMP domain-containing histidine kinase compare
LRK54_RS03765 -0.4 -1.7 hypothetical protein compare
LRK54_RS10165 -0.4 -3.4 phosphoribosylamine--glycine ligase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments