Experiment set13S64 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS12055 +1.5 2.3 dipeptide epimerase compare
LRK54_RS07290 +1.0 2.1 VanZ family protein compare
LRK54_RS16255 +1.0 3.6 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS11230 +1.0 1.3 universal stress protein compare
LRK54_RS06425 +1.0 2.6 ribonucleoside-diphosphate reductase compare
LRK54_RS06820 +0.9 3.0 Fis family transcriptional regulator compare
LRK54_RS05810 +0.9 2.5 membrane protein compare
LRK54_RS14580 +0.9 1.8 hypothetical protein compare
LRK54_RS04365 +0.9 2.2 H-NS histone family protein compare
LRK54_RS11725 +0.9 1.5 PilZ domain-containing protein compare
LRK54_RS02710 +0.9 0.5 pentapeptide MXKDX repeat protein compare
LRK54_RS16360 +0.7 1.6 NAD(+)--rifampin ADP-ribosyltransferase compare
LRK54_RS06155 +0.7 1.0 cysteine dioxygenase compare
LRK54_RS01925 +0.7 3.1 TolC family protein compare
LRK54_RS02865 +0.7 1.1 type II toxin-antitoxin system HicA family toxin compare
LRK54_RS14245 +0.7 1.2 hypothetical protein compare
LRK54_RS03730 +0.6 1.6 acylphosphatase compare
LRK54_RS15365 +0.6 1.6 hypothetical protein compare
LRK54_RS11890 +0.6 1.0 O-acetyl-ADP-ribose deacetylase compare
LRK54_RS13505 +0.6 2.6 flagellar assembly protein FliH compare
LRK54_RS05110 +0.6 0.9 glycosyltransferase family 4 protein compare
LRK54_RS00750 +0.6 1.2 response regulator transcription factor compare
LRK54_RS06280 +0.6 0.7 alpha/beta hydrolase compare
LRK54_RS01610 +0.6 1.2 ATP phosphoribosyltransferase compare
LRK54_RS00900 +0.6 1.8 helix-turn-helix transcriptional regulator compare
LRK54_RS00490 +0.6 0.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS07195 +0.5 1.0 hypothetical protein compare
LRK54_RS01295 +0.5 0.8 DUF6165 family protein compare
LRK54_RS17905 +0.5 1.1 NfuA family Fe-S biogenesis protein compare
LRK54_RS06225 +0.5 1.2 hypothetical protein compare
LRK54_RS16575 +0.5 4.6 GGDEF domain-containing phosphodiesterase compare
LRK54_RS14160 +0.5 1.8 cytochrome c compare
LRK54_RS02695 +0.5 1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS15550 +0.4 1.7 alkyl hydroperoxide reductase compare
LRK54_RS01930 +0.4 1.8 hypothetical protein compare
LRK54_RS13585 +0.4 1.4 chemotaxis response regulator CheY compare
LRK54_RS04445 +0.4 1.3 ABC transporter ATP-binding protein compare
LRK54_RS00175 +0.4 1.1 transposase compare
LRK54_RS16245 +0.4 2.2 ABC transporter ATP-binding protein compare
LRK54_RS14290 +0.4 2.4 ABC transporter ATP-binding protein compare
LRK54_RS16405 +0.4 2.0 VOC family protein compare
LRK54_RS13885 +0.4 1.0 DUF2249 domain-containing protein compare
LRK54_RS07495 +0.4 1.8 hypothetical protein compare
LRK54_RS17135 +0.4 0.6 hypothetical protein compare
LRK54_RS07455 +0.4 1.5 hypothetical protein compare
LRK54_RS14260 +0.4 1.5 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK54_RS08550 +0.4 1.5 lipoprotein compare
LRK54_RS14670 +0.4 0.6 NrsF family protein compare
LRK54_RS03970 +0.4 2.1 NUDIX domain-containing protein compare
LRK54_RS05795 +0.4 3.1 azurin compare
LRK54_RS08635 +0.4 2.0 DUF4336 domain-containing protein compare
LRK54_RS04015 +0.4 3.0 TPM domain-containing protein compare
LRK54_RS07130 +0.4 1.7 DUF2244 domain-containing protein compare
LRK54_RS05195 +0.4 0.9 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS18075 +0.4 1.8 tRNA-binding protein compare
LRK54_RS10660 +0.4 0.4 DUF4156 domain-containing protein compare
LRK54_RS04255 +0.4 2.7 type IV pilus twitching motility protein PilT compare
LRK54_RS01845 +0.4 2.3 RnfABCDGE type electron transport complex subunit B compare
LRK54_RS17025 +0.4 0.6 cold-shock protein compare
LRK54_RS06045 +0.4 2.6 hypothetical protein compare
LRK54_RS16350 +0.4 1.0 helix-turn-helix domain-containing protein compare
LRK54_RS10270 +0.4 1.6 ComF family protein compare
LRK54_RS15695 +0.4 1.5 hypothetical protein compare
LRK54_RS03780 +0.4 1.7 hypothetical protein compare
LRK54_RS09625 +0.4 1.8 MerC domain-containing protein compare
LRK54_RS15765 +0.4 0.6 hypothetical protein compare
LRK54_RS00885 +0.4 1.6 class II fumarate hydratase compare
LRK54_RS08385 +0.3 0.9 GntR family transcriptional regulator compare
LRK54_RS01210 +0.3 1.4 hypothetical protein compare
LRK54_RS11380 +0.3 1.9 c-type cytochrome compare
LRK54_RS12850 +0.3 1.2 HPr family phosphocarrier protein compare
LRK54_RS02470 +0.3 1.7 YciI family protein compare
LRK54_RS05310 +0.3 2.0 homoserine O-succinyltransferase compare
LRK54_RS03415 +0.3 2.1 mismatch-specific DNA-glycosylase compare
LRK54_RS09480 +0.3 1.7 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK54_RS06100 +0.3 1.4 hypothetical protein compare
LRK54_RS10260 +0.3 1.9 biotin synthase BioB compare
LRK54_RS10500 +0.3 1.0 glycerophosphodiester phosphodiesterase compare
LRK54_RS17560 +0.3 1.5 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS13190 +0.3 2.2 glycosyltransferase, exosortase A system-associated compare
LRK54_RS10210 +0.3 1.2 pyridoxal-phosphate dependent enzyme compare
LRK54_RS14475 +0.3 2.6 sensor histidine kinase compare
LRK54_RS11025 +0.3 1.6 hypothetical protein compare
LRK54_RS10145 +0.3 1.7 DNA-processing protein DprA compare
LRK54_RS15200 +0.3 0.8 AraC family transcriptional regulator compare
LRK54_RS03410 +0.3 2.3 ATP-binding protein compare
LRK54_RS15455 +0.3 1.0 DinB family protein compare
LRK54_RS13790 +0.3 1.1 DUF3301 domain-containing protein compare
LRK54_RS10645 +0.3 1.6 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
LRK54_RS00810 +0.3 1.1 SMC-Scp complex subunit ScpB compare
LRK54_RS05685 +0.3 2.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
LRK54_RS11195 +0.3 1.9 arginine deiminase-related protein compare
LRK54_RS04895 +0.3 1.2 tol-pal system-associated acyl-CoA thioesterase compare
LRK54_RS13425 +0.3 0.8 flagellar basal-body rod protein FlgF compare
LRK54_RS02750 +0.3 1.0 hypothetical protein compare
LRK54_RS05330 +0.3 1.5 aminopeptidase P family protein compare
LRK54_RS02640 +0.3 1.7 DEAD/DEAH box helicase compare
LRK54_RS07515 +0.3 1.5 tryptophan-rich sensory protein compare
LRK54_RS13260 +0.3 1.4 hypothetical protein compare
LRK54_RS11000 +0.3 1.1 HutD family protein compare
LRK54_RS01575 +0.3 1.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK54_RS07750 +0.3 1.1 DUF302 domain-containing protein compare
LRK54_RS16990 +0.3 1.8 hypothetical protein compare
LRK54_RS01765 +0.3 1.8 transcription elongation factor GreB compare
LRK54_RS04960 +0.3 1.5 peptidoglycan editing factor PgeF compare
LRK54_RS02610 +0.3 1.3 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS16435 +0.3 0.9 helix-turn-helix transcriptional regulator compare
LRK54_RS09105 +0.3 0.9 energy transducer TonB compare
LRK54_RS09790 +0.3 2.2 hypothetical protein compare
LRK54_RS00730 +0.3 1.7 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK54_RS13665 +0.3 1.5 chemoreceptor glutamine deamidase CheD compare
LRK54_RS03425 +0.3 2.2 c-type cytochrome compare
LRK54_RS03670 +0.3 1.1 acyl-CoA thioesterase compare
LRK54_RS11045 +0.3 1.8 alpha/beta fold hydrolase compare
LRK54_RS09150 +0.3 1.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS02705 +0.3 1.3 nitronate monooxygenase compare
LRK54_RS07675 +0.3 1.1 CPBP family intramembrane metalloprotease compare
LRK54_RS13555 +0.3 1.2 flagellar biosynthetic protein FliR compare
LRK54_RS10955 +0.2 2.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS07960 +0.2 1.3 DUF488 domain-containing protein compare
LRK54_RS06790 +0.2 1.9 TlpA family protein disulfide reductase compare
LRK54_RS08965 +0.2 1.6 DNA-binding protein compare
LRK54_RS12610 +0.2 1.4 PhzF family phenazine biosynthesis protein compare
LRK54_RS10485 +0.2 0.8 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS15925 +0.2 0.4 carboxymuconolactone decarboxylase family protein compare
LRK54_RS14545 +0.2 1.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
LRK54_RS15330 +0.2 1.4 hypothetical protein compare
LRK54_RS14665 +0.2 1.5 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS03330 +0.2 1.9 TlpA family protein disulfide reductase compare
LRK54_RS06660 +0.2 1.8 DUF2333 family protein compare
LRK54_RS10505 +0.2 1.5 hypothetical protein compare
LRK54_RS01365 +0.2 1.3 heavy metal-responsive transcriptional regulator compare
LRK54_RS01880 +0.2 1.6 group 1 truncated hemoglobin compare
LRK54_RS12080 +0.2 1.7 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS01890 +0.2 1.4 hypothetical protein compare
LRK54_RS04780 +0.2 0.9 DUF3501 family protein compare
LRK54_RS13430 +0.2 1.2 flagellar basal-body rod protein FlgG compare
LRK54_RS07775 +0.2 1.0 MarR family transcriptional regulator compare
LRK54_RS13415 +0.2 1.3 flagellar hook capping protein compare
LRK54_RS02825 +0.2 1.3 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS13025 +0.2 0.8 hypothetical protein compare
LRK54_RS09180 +0.2 2.2 phosphomannomutase/phosphoglucomutase compare
LRK54_RS13580 +0.2 1.8 RNA polymerase sigma factor FliA compare
LRK54_RS14000 +0.2 1.0 nitrate reductase molybdenum cofactor assembly chaperone compare
LRK54_RS04790 +0.2 1.2 adenine phosphoribosyltransferase compare
LRK54_RS15890 +0.2 1.4 LLM class flavin-dependent oxidoreductase compare
LRK54_RS01955 +0.2 1.0 thymidine phosphorylase family protein compare
LRK54_RS10985 +0.2 1.1 DUF938 domain-containing protein compare
LRK54_RS12800 +0.2 1.7 DoxX family protein compare
LRK54_RS13155 +0.2 1.3 DUF3473 domain-containing protein compare
LRK54_RS12510 +0.2 1.6 elongation factor G compare
LRK54_RS07690 +0.2 1.3 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein compare
LRK54_RS17825 +0.2 1.3 organomercurial transporter MerC compare
LRK54_RS15165 +0.2 0.8 enoyl-CoA hydratase-related protein compare
LRK54_RS02760 +0.2 1.8 PepSY domain-containing protein compare
LRK54_RS17400 +0.2 0.3 hypothetical protein compare
LRK54_RS14740 +0.2 1.3 glutathione peroxidase compare
LRK54_RS01495 +0.2 1.7 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS16265 +0.2 1.1 multidrug resistance efflux transporter family protein compare
LRK54_RS02900 +0.2 1.9 C40 family peptidase compare
LRK54_RS17580 +0.2 0.9 copper-binding protein compare
LRK54_RS06960 +0.2 1.0 hypothetical protein compare
LRK54_RS05370 +0.2 1.4 aspartate/glutamate racemase family protein compare
LRK54_RS17940 +0.2 1.3 outer membrane protein assembly factor BamE compare
LRK54_RS07940 +0.2 1.7 histidine kinase compare
LRK54_RS10255 +0.2 1.3 8-amino-7-oxononanoate synthase compare
LRK54_RS17535 +0.2 1.2 cation transporter compare
LRK54_RS13980 +0.2 1.0 molybdenum cofactor guanylyltransferase compare
LRK54_RS08010 +0.2 1.4 amidohydrolase family protein compare
LRK54_RS18105 +0.2 0.7 DNA oxidative demethylase AlkB compare
LRK54_RS13530 +0.2 1.2 flagellar motor switch protein FliM compare
LRK54_RS12415 +0.2 1.1 hypothetical protein compare
LRK54_RS05240 +0.2 1.0 YceI family protein compare
LRK54_RS00450 +0.2 1.1 ribonuclease T compare
LRK54_RS15560 +0.2 1.5 DUF899 family protein compare
LRK54_RS12515 +0.2 1.6 hypothetical protein compare
LRK54_RS01780 +0.2 1.5 30S ribosomal protein S12 methylthiotransferase RimO compare
LRK54_RS05020 +0.2 1.6 sigma-54 dependent transcriptional regulator compare
LRK54_RS16295 +0.2 1.6 DNA-3-methyladenine glycosylase 2 compare
LRK54_RS06985 +0.2 1.6 spore coat U domain-containing protein compare
LRK54_RS07645 +0.2 1.2 alpha/beta hydrolase compare
LRK54_RS07580 +0.2 1.2 Na+/H+ antiporter subunit E compare
LRK54_RS09855 +0.2 1.4 LysM peptidoglycan-binding domain-containing protein compare
LRK54_RS13285 +0.2 1.4 ThiF family adenylyltransferase compare
LRK54_RS04430 +0.2 1.4 ABC transporter permease compare
LRK54_RS10360 +0.2 0.7 homoserine kinase compare
LRK54_RS06040 +0.2 0.9 LysM peptidoglycan-binding domain-containing protein compare
LRK54_RS17590 +0.2 1.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS09710 +0.2 1.3 hypothetical protein compare
LRK54_RS17420 +0.2 1.4 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase compare
LRK54_RS06170 +0.2 0.7 prolyl oligopeptidase family serine peptidase compare
LRK54_RS12390 +0.2 1.3 low-specificity L-threonine aldolase compare
LRK54_RS15300 +0.2 1.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS07125 +0.2 1.6 cytochrome c oxidase subunit II compare
LRK54_RS13740 +0.2 1.1 ABC transporter permease compare
LRK54_RS06440 +0.2 1.0 HAD family hydrolase compare
LRK54_RS04385 +0.2 1.6 ATP-binding protein compare
LRK54_RS13570 +0.2 1.3 flagellar biosynthesis protein FlhF compare
LRK54_RS09345 +0.2 0.3 ATP-binding protein compare
LRK54_RS10040 +0.2 0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments