Experiment set13S63 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
LRK54_RS05980 -3.3 -2.3 ATP-binding protein compare
LRK54_RS17505 -3.2 -5.3 preprotein translocase subunit SecG compare
LRK54_RS06785 -2.8 -3.3 protein-disulfide reductase DsbD compare
LRK54_RS11170 -2.8 -5.6 NADP-dependent malic enzyme compare
LRK54_RS05985 -2.7 -2.6 response regulator transcription factor compare
LRK54_RS16940 -2.7 -6.8 RNA polymerase sigma factor RpoE compare
LRK54_RS03125 -2.6 -1.8 preprotein translocase subunit YajC compare
LRK54_RS04720 -2.4 -9.5 phosphoribosylformylglycinamidine synthase compare
LRK54_RS03675 -2.4 -2.3 redox-regulated ATPase YchF compare
LRK54_RS04630 -2.2 -2.6 energy-dependent translational throttle protein EttA compare
LRK54_RS00080 -2.2 -10.5 helix-turn-helix domain-containing protein compare
LRK54_RS03290 -2.2 -3.8 RIP metalloprotease RseP compare
LRK54_RS15035 -2.1 -8.3 M48 family metalloprotease compare
LRK54_RS11375 -2.1 -8.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05415 -2.1 -10.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS07020 -2.0 -2.4 ABC transporter permease compare
LRK54_RS13760 -2.0 -9.8 trypsin-like peptidase domain-containing protein compare
LRK54_RS00670 -2.0 -7.1 OmpA family protein compare
LRK54_RS16755 -2.0 -5.1 SurA N-terminal domain-containing protein compare
LRK54_RS07980 -2.0 -4.0 nitrogen regulation protein NR(I) compare
LRK54_RS16730 -2.0 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS14245 -2.0 -3.5 hypothetical protein compare
LRK54_RS06420 -1.9 -1.7 hypothetical protein compare
LRK54_RS05655 -1.8 -3.8 ABC transporter permease compare
LRK54_RS01800 -1.8 -3.4 dCTP deaminase compare
LRK54_RS02275 -1.8 -4.3 enoyl-CoA hydratase-related protein compare
LRK54_RS07215 -1.8 -6.9 cytochrome c4 compare
LRK54_RS12460 -1.8 -2.9 hypothetical protein compare
LRK54_RS17205 -1.8 -4.8 heavy metal translocating P-type ATPase compare
LRK54_RS04585 -1.8 -6.4 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS17230 -1.7 -9.7 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS17225 -1.7 -3.7 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS00085 -1.7 -2.2 tetratricopeptide repeat protein compare
LRK54_RS04050 -1.7 -8.5 glycoside hydrolase compare
LRK54_RS11175 -1.7 -6.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12865 -1.6 -7.3 HPr(Ser) kinase/phosphatase compare
LRK54_RS06415 -1.6 -1.5 hypothetical protein compare
LRK54_RS00675 -1.6 -10.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS05785 -1.6 -6.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS04025 -1.6 -1.6 diacylglycerol kinase compare
LRK54_RS10150 -1.6 -1.9 DNA topoisomerase I compare
LRK54_RS05200 -1.6 -2.9 hypothetical protein compare
LRK54_RS16970 -1.5 -4.1 ribonuclease III compare
LRK54_RS17215 -1.5 -3.4 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS00695 -1.5 -5.3 methylisocitrate lyase compare
LRK54_RS00305 -1.5 -9.8 asparagine synthase B compare
LRK54_RS05550 -1.5 -2.4 FAD-binding protein compare
LRK54_RS17830 -1.5 -1.7 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS16155 -1.5 -1.8 folate-binding protein compare
LRK54_RS12860 -1.5 -4.7 RNase adapter RapZ compare
LRK54_RS09805 -1.5 -6.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS05535 -1.5 -5.9 glycosyltransferase family 2 protein compare
LRK54_RS12945 -1.4 -7.6 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06675 -1.4 -6.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS00635 -1.4 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS13620 -1.3 -2.8 hypothetical protein compare
LRK54_RS11290 -1.3 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS00440 -1.3 -5.9 high frequency lysogenization protein HflD compare
LRK54_RS01685 -1.3 -8.4 tryptophan synthase subunit beta compare
LRK54_RS02855 -1.3 -5.4 type I restriction-modification system subunit M compare
LRK54_RS12010 -1.2 -5.5 response regulator transcription factor compare
LRK54_RS04350 -1.2 -3.8 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS01680 -1.2 -5.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS00805 -1.2 -3.3 segregation/condensation protein A compare
LRK54_RS02895 -1.2 -7.5 rhomboid family intramembrane serine protease compare
LRK54_RS00775 -1.2 -7.1 translational GTPase TypA compare
LRK54_RS17220 -1.2 -2.0 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS05365 -1.2 -1.8 MarR family transcriptional regulator compare
LRK54_RS11570 -1.1 -2.9 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS10660 -1.1 -1.1 DUF4156 domain-containing protein compare
LRK54_RS05740 -1.1 -5.0 phosphoglycerate kinase compare
LRK54_RS05665 -1.1 -3.6 dTDP-glucose 4,6-dehydratase compare
LRK54_RS04590 -1.1 -1.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS02535 -1.1 -4.2 50S ribosomal protein L9 compare
LRK54_RS14590 -1.1 -5.3 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02440 -1.1 -2.2 RNA polymerase-binding protein DksA compare
LRK54_RS00395 -1.1 -2.7 prephenate dehydratase compare
LRK54_RS06685 -1.1 -7.7 TolC family outer membrane protein compare
LRK54_RS02955 -1.1 -2.0 efflux transporter outer membrane subunit compare
LRK54_RS17270 -1.0 -3.6 DNA translocase FtsK compare
LRK54_RS00615 -1.0 -4.8 protease modulator HflC compare
LRK54_RS01280 -1.0 -1.9 MBL fold metallo-hydrolase compare
LRK54_RS05810 -1.0 -1.3 membrane protein compare
LRK54_RS05650 -1.0 -3.3 ABC transporter ATP-binding protein compare
LRK54_RS05495 -1.0 -3.0 met regulon transcriptional regulator MetJ compare
LRK54_RS02090 -0.9 -7.4 NAD-glutamate dehydrogenase compare
LRK54_RS02325 -0.9 -2.8 SDR family oxidoreductase compare
LRK54_RS08930 -0.9 -3.3 XRE family transcriptional regulator compare
LRK54_RS15105 -0.9 -3.3 polynucleotide adenylyltransferase PcnB compare
LRK54_RS08775 -0.9 -1.0 GNAT family N-acetyltransferase compare
LRK54_RS05770 -0.9 -7.1 energy transducer TonB compare
LRK54_RS04140 -0.9 -4.1 inositol-phosphate phosphatase compare
LRK54_RS16740 -0.9 -2.7 HU family DNA-binding protein compare
LRK54_RS16150 -0.9 -1.1 cell wall hydrolase compare
LRK54_RS04625 -0.9 -5.7 serine hydroxymethyltransferase compare
LRK54_RS11415 -0.9 -6.0 anthranilate synthase component I compare
LRK54_RS02070 -0.9 -3.7 acyl-CoA dehydrogenase family protein compare
LRK54_RS17210 -0.9 -2.0 hypothetical protein compare
LRK54_RS00320 -0.9 -1.9 phosphoglycerate mutase compare
LRK54_RS00815 -0.8 -3.3 pseudouridine synthase compare
LRK54_RS06895 -0.8 -1.8 hotdog fold thioesterase compare
LRK54_RS00750 -0.8 -1.4 response regulator transcription factor compare
LRK54_RS07075 -0.8 -5.6 magnesium-translocating P-type ATPase compare
LRK54_RS11560 -0.8 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS04210 -0.8 -2.4 YqgE/AlgH family protein compare
LRK54_RS15455 -0.8 -1.6 DinB family protein compare
LRK54_RS08750 -0.8 -2.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS11820 -0.8 -5.9 citrate synthase compare
LRK54_RS11975 -0.8 -3.6 SLC13 family permease compare
LRK54_RS10170 -0.8 -7.0 YbaY family lipoprotein compare
LRK54_RS17855 -0.8 -2.5 (2Fe-2S)-binding protein compare
LRK54_RS12995 -0.8 -1.8 MGMT family protein compare
LRK54_RS00620 -0.8 -4.5 FtsH protease activity modulator HflK compare
LRK54_RS10920 -0.8 -6.5 DEAD/DEAH box helicase compare
LRK54_RS16615 -0.8 -1.2 phosphopyruvate hydratase compare
LRK54_RS03710 -0.8 -3.9 tetratricopeptide repeat protein compare
LRK54_RS02970 -0.8 -2.8 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS18055 -0.8 -3.2 glycosyltransferase family 4 protein compare
LRK54_RS07570 -0.8 -1.7 monovalent cation/H(+) antiporter subunit G compare
LRK54_RS04035 -0.8 -3.9 ATP-binding protein compare
LRK54_RS12295 -0.7 -2.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS00680 -0.7 -4.8 TerC family protein compare
LRK54_RS06795 -0.7 -2.4 type II 3-dehydroquinate dehydratase compare
LRK54_RS07005 -0.7 -4.7 spore coat protein U domain-containing protein compare
LRK54_RS05440 -0.7 -4.2 hypothetical protein compare
LRK54_RS13830 -0.7 -3.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS07220 -0.7 -4.1 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS05670 -0.7 -3.0 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS09175 -0.7 -3.1 dUTP diphosphatase compare
LRK54_RS01720 -0.7 -0.7 hydroxyacid dehydrogenase compare
LRK54_RS11285 -0.7 -2.4 ABC transporter ATP-binding protein compare
LRK54_RS14460 -0.7 -3.7 septum site-determining protein MinD compare
LRK54_RS05110 -0.7 -0.6 glycosyltransferase family 4 protein compare
LRK54_RS05060 -0.7 -1.4 carbohydrate kinase compare
LRK54_RS16955 -0.7 -4.9 translation elongation factor 4 compare
LRK54_RS06960 -0.7 -2.4 hypothetical protein compare
LRK54_RS03405 -0.7 -3.9 ribonuclease G compare
LRK54_RS18050 -0.6 -4.7 lipopolysaccharide assembly protein LapB compare
LRK54_RS06885 -0.6 -3.1 rhodanese-like domain-containing protein compare
LRK54_RS09825 -0.6 -4.1 alpha/beta hydrolase compare
LRK54_RS16650 -0.6 -3.3 5'/3'-nucleotidase SurE compare
LRK54_RS04305 -0.6 -1.5 shikimate kinase compare
LRK54_RS04615 -0.6 -2.5 transcriptional regulator NrdR compare
LRK54_RS02550 -0.6 -1.3 iron-sulfur cluster assembly accessory protein compare
LRK54_RS04545 -0.6 -3.0 hemin uptake protein HemP compare
LRK54_RS06745 -0.6 -3.0 mitochondrial fission ELM1 family protein compare
LRK54_RS13970 -0.6 -1.3 MoaD/ThiS family protein compare
LRK54_RS09155 -0.6 -2.0 SPOR domain-containing protein compare
LRK54_RS12855 -0.6 -1.8 PTS fructose transporter subunit IIA compare
LRK54_RS06240 -0.6 -1.8 hypothetical protein compare
LRK54_RS10075 -0.6 -1.5 tetratricopeptide repeat protein compare
LRK54_RS03185 -0.6 -2.4 phosphoglycerate dehydrogenase compare
LRK54_RS16720 -0.6 -3.0 trigger factor compare
LRK54_RS00015 -0.6 -1.1 hypothetical protein compare
LRK54_RS06470 -0.6 -3.9 carboxy terminal-processing peptidase compare
LRK54_RS14560 -0.6 -3.8 hypothetical protein compare
LRK54_RS00935 -0.6 -3.9 sulfite exporter TauE/SafE family protein compare
LRK54_RS15605 -0.6 -2.0 hypothetical protein compare
LRK54_RS03765 -0.6 -1.3 hypothetical protein compare
LRK54_RS01395 -0.6 -0.6 arsenate reductase ArsC compare
LRK54_RS04790 -0.6 -3.0 adenine phosphoribosyltransferase compare
LRK54_RS12830 -0.6 -2.2 YeiH family protein compare
LRK54_RS05610 -0.6 -3.4 GtrA family protein compare
LRK54_RS10305 -0.5 -1.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS10165 -0.5 -3.9 phosphoribosylamine--glycine ligase compare
LRK54_RS14825 -0.5 -2.2 protease HtpX compare
LRK54_RS00495 -0.5 -4.2 ribonuclease R compare
LRK54_RS16815 -0.5 -1.5 hypothetical protein compare
LRK54_RS12300 -0.5 -2.4 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS13105 -0.5 -1.4 FHA domain-containing protein compare
LRK54_RS14915 -0.5 -2.2 response regulator compare
LRK54_RS04370 -0.5 -1.9 threonine/serine exporter family protein compare
LRK54_RS10640 -0.5 -1.3 SCP2 sterol-binding domain-containing protein compare
LRK54_RS03040 -0.5 -2.0 MtnX-like HAD-IB family phosphatase compare
LRK54_RS00435 -0.5 -4.0 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS05855 -0.5 -1.9 MarR family transcriptional regulator compare
LRK54_RS02175 -0.5 -3.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS17850 -0.5 -2.3 DUF2282 domain-containing protein compare
LRK54_RS16930 -0.5 -3.2 hypothetical protein compare
LRK54_RS11470 -0.5 -1.7 M15 family metallopeptidase compare
LRK54_RS06495 -0.5 -3.7 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS06220 -0.5 -2.2 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
LRK54_RS05540 -0.5 -1.8 glycosyltransferase family 2 protein compare
LRK54_RS12670 -0.5 -3.5 glycosyltransferase compare
LRK54_RS09820 -0.5 -4.3 cell division protein ZapE compare
LRK54_RS01955 -0.5 -1.0 thymidine phosphorylase family protein compare
LRK54_RS16660 -0.5 -3.4 VTT domain-containing protein compare
LRK54_RS14845 -0.5 -0.6 LysR family transcriptional regulator compare
LRK54_RS08595 -0.5 -3.1 shikimate dehydrogenase compare
LRK54_RS11310 -0.5 -1.9 hypothetical protein compare
LRK54_RS06425 -0.5 -1.1 ribonucleoside-diphosphate reductase compare
LRK54_RS08795 -0.5 -2.8 IS110 family transposase compare
LRK54_RS09835 -0.5 -2.7 c-type cytochrome compare
LRK54_RS16735 -0.5 -4.0 endopeptidase La compare
LRK54_RS13790 -0.5 -1.1 DUF3301 domain-containing protein compare
LRK54_RS02960 -0.5 -3.5 ABC transporter permease compare
LRK54_RS05275 -0.5 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS13695 -0.5 -2.4 NUDIX hydrolase compare
LRK54_RS02885 -0.5 -3.5 RNA polymerase-associated protein RapA compare
LRK54_RS00400 -0.5 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments