Experiment set13S59 for Phocaeicola vulgatus CL09T03C04

Compare to:

Yeast Extract 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS07655 -3.9 -2.3 hypothetical protein compare
HMPREF1058_RS01800 -3.4 -6.5 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS05140 -3.2 -4.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS06335 -3.1 -9.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS11890 -2.8 -6.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS02140 -2.8 -14.0 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS06345 -2.4 -5.4 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06340 -2.4 -6.0 electron transport complex subunit RsxC compare
HMPREF1058_RS06325 -2.4 -4.3 electron transport complex subunit E compare
HMPREF1058_RS16505 -2.4 -8.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06320 -2.3 -7.0 electron transport complex subunit RsxA compare
HMPREF1058_RS14035 -2.2 -2.4 hypothetical protein compare
HMPREF1058_RS12070 -2.2 -3.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS13970 -2.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS06330 -2.2 -3.8 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS03085 -2.2 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS00595 -2.1 -3.4 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS02220 -2.0 -5.8 branched-chain amino acid aminotransferase compare
HMPREF1058_RS16500 -1.9 -4.8 OadG family protein compare
HMPREF1058_RS03530 -1.9 -1.3 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS14465 -1.9 -4.2 enoyl-ACP reductase compare
HMPREF1058_RS06350 -1.8 -5.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS03105 -1.8 -4.3 ABC transporter permease compare
HMPREF1058_RS16730 -1.8 -4.2 chorismate synthase compare
HMPREF1058_RS04300 -1.8 -5.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS05925 -1.8 -2.0 DUF5024 domain-containing protein compare
HMPREF1058_RS02755 -1.7 -2.9 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS09680 -1.7 -4.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS13735 -1.7 -4.7 hypothetical protein compare
HMPREF1058_RS11205 -1.7 -1.8 radical SAM protein compare
HMPREF1058_RS13635 -1.6 -4.3 gliding motility lipoprotein GldH compare
HMPREF1058_RS04050 -1.5 -4.4 protein BatD compare
HMPREF1058_RS03755 -1.5 -7.4 DUF3078 domain-containing protein compare
HMPREF1058_RS05790 -1.5 -2.9 hypothetical protein compare
HMPREF1058_RS0119260 -1.5 -1.8 hypothetical protein compare
HMPREF1058_RS12885 -1.5 -6.1 purine-nucleoside phosphorylase compare
HMPREF1058_RS18695 -1.5 -2.3 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS04080 -1.5 -3.0 AAA family ATPase compare
HMPREF1058_RS06190 -1.5 -5.6 aspartate kinase compare
HMPREF1058_RS10920 -1.4 -2.7 viroplasmin family protein compare
HMPREF1058_RS15375 -1.4 -1.4 DUF4369 domain-containing protein compare
HMPREF1058_RS02495 -1.4 -6.9 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS05300 -1.4 -2.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11270 -1.4 -7.2 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS11490 -1.4 -4.3 redox-regulated ATPase YchF compare
HMPREF1058_RS20295 -1.4 -1.9 hypothetical protein compare
HMPREF1058_RS17815 -1.4 -5.2 MFS transporter compare
HMPREF1058_RS07540 -1.4 -2.6 acetyltransferase compare
HMPREF1058_RS07670 -1.4 -1.8 HAMP domain-containing histidine kinase compare
HMPREF1058_RS04290 -1.4 -5.3 DUF1015 domain-containing protein compare
HMPREF1058_RS04065 -1.4 -1.1 VWA domain-containing protein compare
HMPREF1058_RS02750 -1.3 -2.0 BamA/TamA family outer membrane protein compare
HMPREF1058_RS15915 -1.3 -3.7 OmpH family outer membrane protein compare
HMPREF1058_RS17155 -1.3 -2.8 dCMP deaminase family protein compare
HMPREF1058_RS02540 -1.3 -2.8 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS04745 -1.3 -2.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10080 -1.3 -8.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS10075 -1.3 -7.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS0119830 -1.3 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07575 -1.3 -3.4 MCE family protein compare
HMPREF1058_RS06410 -1.3 -2.6 elongation factor 4 compare
HMPREF1058_RS02480 -1.2 -2.8 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS12735 -1.2 -5.2 HDIG domain-containing protein compare
HMPREF1058_RS03075 -1.2 -3.4 DNA helicase RecQ compare
HMPREF1058_RS17565 -1.2 -2.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS03535 -1.2 -0.8 UvrD-helicase domain-containing protein compare
HMPREF1058_RS02410 -1.2 -8.2 methylmalonyl-CoA mutase compare
HMPREF1058_RS04530 -1.1 -1.0 hypothetical protein compare
HMPREF1058_RS02405 -1.1 -7.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS03110 -1.1 -5.5 ABC transporter ATP-binding protein compare
HMPREF1058_RS05360 -1.1 -1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS17385 -1.1 -1.6 DUF4248 domain-containing protein compare
HMPREF1058_RS04295 -1.1 -4.0 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06255 -1.1 -5.8 hypothetical protein compare
HMPREF1058_RS04305 -1.1 -2.9 DEAD/DEAH box helicase compare
HMPREF1058_RS06555 -1.1 -1.2 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS14285 -1.1 -2.8 DUF5056 domain-containing protein compare
HMPREF1058_RS11380 -1.1 -4.3 DUF4271 domain-containing protein compare
HMPREF1058_RS04025 -1.1 -4.6 hypothetical protein compare
HMPREF1058_RS00560 -1.1 -2.2 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS17080 -1.1 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS17130 -1.0 -1.6 tetratricopeptide repeat protein compare
HMPREF1058_RS16845 -1.0 -3.8 SurA N-terminal domain-containing protein compare
HMPREF1058_RS06260 -1.0 -4.8 DUF3943 domain-containing protein compare
HMPREF1058_RS04375 -1.0 -3.4 carbon-nitrogen hydrolase compare
HMPREF1058_RS09445 -1.0 -1.4 tyrosine-type recombinase/integrase compare
HMPREF1058_RS02975 -1.0 -1.6 hypothetical protein compare
HMPREF1058_RS05930 -1.0 -4.4 MFS transporter compare
HMPREF1058_RS01540 -1.0 -4.7 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS16065 -1.0 -3.9 DUF1016 family protein compare
HMPREF1058_RS21525 -1.0 -2.2 hypothetical protein compare
HMPREF1058_RS02020 -1.0 -2.8 hypothetical protein compare
HMPREF1058_RS14590 -1.0 -1.7 AraC family transcriptional regulator compare
HMPREF1058_RS06600 -1.0 -1.9 DedA family protein compare
HMPREF1058_RS13250 -1.0 -1.7 DUF3853 family protein compare
HMPREF1058_RS02155 -1.0 -5.1 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS16510 -0.9 -2.7 methylmalonyl-CoA epimerase compare
HMPREF1058_RS11910 -0.9 -4.4 DEAD/DEAH box helicase compare
HMPREF1058_RS18870 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS07245 -0.9 -2.4 Rne/Rng family ribonuclease compare
HMPREF1058_RS15380 -0.9 -5.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS16070 -0.9 -3.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14660 -0.9 -4.9 TolC family protein compare
HMPREF1058_RS09750 -0.9 -3.8 glycosyltransferase compare
HMPREF1058_RS10255 -0.9 -1.7 hypothetical protein compare
HMPREF1058_RS14200 -0.9 -4.8 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS01725 -0.9 -3.5 peptide MFS transporter compare
HMPREF1058_RS07675 -0.8 -5.0 elongation factor G compare
HMPREF1058_RS07455 -0.8 -1.9 HDIG domain-containing protein compare
HMPREF1058_RS15435 -0.8 -4.0 hypothetical protein compare
HMPREF1058_RS02170 -0.8 -4.8 hypothetical protein compare
HMPREF1058_RS16260 -0.8 -2.9 hotdog fold thioesterase compare
HMPREF1058_RS18780 -0.8 -5.2 aminomethyl-transferring glycine dehydrogenase compare
HMPREF1058_RS01275 -0.8 -3.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS10955 -0.8 -3.1 phosphatase PAP2 family protein compare
HMPREF1058_RS18265 -0.8 -2.2 aspartate 1-decarboxylase compare
HMPREF1058_RS05765 -0.8 -4.4 nucleoside phosphorylase compare
HMPREF1058_RS08780 -0.8 -5.3 4Fe-4S binding protein compare
HMPREF1058_RS07310 -0.8 -5.3 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS01460 -0.8 -1.7 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS05560 -0.8 -3.3 hypothetical protein compare
HMPREF1058_RS14605 -0.8 -2.1 transcriptional repressor compare
HMPREF1058_RS14220 -0.8 -2.0 energy transducer TonB compare
HMPREF1058_RS04740 -0.8 -3.7 DUF5606 domain-containing protein compare
HMPREF1058_RS10270 -0.8 -1.4 hypothetical protein compare
HMPREF1058_RS02485 -0.8 -2.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS01805 -0.7 -1.0 DUF4286 family protein compare
HMPREF1058_RS01560 -0.7 -1.6 ABC transporter ATP-binding protein compare
HMPREF1058_RS05015 -0.7 -2.0 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS02800 -0.7 -3.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS13910 -0.7 -2.9 nucleoside deaminase compare
HMPREF1058_RS12505 -0.7 -2.9 RNA polymerase factor sigma-54 compare
HMPREF1058_RS09490 -0.7 -5.0 adenosine kinase compare
HMPREF1058_RS17820 -0.7 -3.4 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS19090 -0.7 -0.5 tRNA-Phe compare
HMPREF1058_RS16495 -0.7 -1.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS03290 -0.7 -2.1 thiamine phosphate synthase compare
HMPREF1058_RS03510 -0.7 -3.1 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS03245 -0.7 -1.5 thiamine phosphate synthase compare
HMPREF1058_RS19025 -0.7 -0.7 hypothetical protein compare
HMPREF1058_RS16690 -0.7 -3.0 NTP transferase domain-containing protein compare
HMPREF1058_RS05590 -0.7 -2.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04370 -0.7 -2.5 agmatine deiminase family protein compare
HMPREF1058_RS10995 -0.7 -4.1 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS01395 -0.7 -3.0 cobyric acid synthase compare
HMPREF1058_RS08025 -0.7 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS04075 -0.7 -1.4 DUF58 domain-containing protein compare
HMPREF1058_RS05570 -0.7 -1.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02065 -0.7 -1.0 hypothetical protein compare
HMPREF1058_RS21520 -0.7 -0.8 hypothetical protein compare
HMPREF1058_RS17035 -0.7 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS18205 -0.7 -2.5 ferrous iron transport protein B compare
HMPREF1058_RS15895 -0.7 -2.0 transcriptional repressor compare
HMPREF1058_RS09745 -0.7 -3.5 glycosyltransferase compare
HMPREF1058_RS01970 -0.7 -1.9 hypothetical protein compare
HMPREF1058_RS13640 -0.7 -2.8 hypothetical protein compare
HMPREF1058_RS08855 -0.7 -3.3 arginine repressor compare
HMPREF1058_RS00565 -0.6 -4.0 hemolysin III family protein compare
HMPREF1058_RS11930 -0.6 -1.5 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS06175 -0.6 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS08850 -0.6 -2.9 N-acetyltransferase compare
HMPREF1058_RS01570 -0.6 -2.9 ABC transporter substrate-binding protein compare
HMPREF1058_RS21570 -0.6 -0.6 hypothetical protein compare
HMPREF1058_RS17040 -0.6 -2.1 NTP transferase domain-containing protein compare
HMPREF1058_RS07900 -0.6 -2.4 DUF1573 domain-containing protein compare
HMPREF1058_RS01475 -0.6 -1.4 hypothetical protein compare
HMPREF1058_RS16035 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS19095 -0.6 -2.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS10155 -0.6 -1.8 hypothetical protein compare
HMPREF1058_RS20355 -0.6 -1.6 hypothetical protein compare
HMPREF1058_RS17765 -0.6 -2.7 Do family serine endopeptidase compare
HMPREF1058_RS02150 -0.6 -4.4 DUF3440 domain-containing protein compare
HMPREF1058_RS13900 -0.6 -1.7 YraN family protein compare
HMPREF1058_RS17760 -0.6 -0.9 YkgB family protein compare
HMPREF1058_RS15280 -0.6 -1.2 tRNA-Ser compare
HMPREF1058_RS04545 -0.6 -1.8 hypothetical protein compare
HMPREF1058_RS01355 -0.6 -2.4 hypothetical protein compare
HMPREF1058_RS05690 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS04070 -0.6 -2.0 hypothetical protein compare
HMPREF1058_RS16255 -0.6 -3.4 isochorismate synthase compare
HMPREF1058_RS14830 -0.6 -1.7 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS16440 -0.6 -2.0 endonuclease MutS2 compare
HMPREF1058_RS18020 -0.6 -3.7 dicarboxylate/amino acid:cation symporter compare
HMPREF1058_RS0120000 -0.6 -2.3 hypothetical protein compare
HMPREF1058_RS16715 -0.6 -0.7 hypothetical protein compare
HMPREF1058_RS04580 -0.6 -0.9 hypothetical protein compare
HMPREF1058_RS11880 -0.6 -4.9 hypothetical protein compare
HMPREF1058_RS10225 -0.6 -2.2 hypothetical protein compare
HMPREF1058_RS09905 -0.6 -1.5 conjugative transposon protein TraK compare
HMPREF1058_RS12705 -0.6 -3.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS15965 -0.6 -1.6 recombinase RecA compare
HMPREF1058_RS0119640 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS09970 -0.6 -0.8 hypothetical protein compare
HMPREF1058_RS06310 -0.6 -2.6 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS15645 -0.6 -2.4 NUDIX hydrolase compare
HMPREF1058_RS14600 -0.6 -2.3 DNA alkylation repair protein compare
HMPREF1058_RS04015 -0.5 -2.8 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS01545 -0.5 -1.3 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS16755 -0.5 -0.8 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS09775 -0.5 -0.6 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Yeast Extract across organisms