Experiment set13S581 for Methanococcus maripaludis S2

Compare to:

McCas_formate_complete sodium nitrite 0.125 mM

200 most important genes:

  gene name fitness t score description  
MMP_RS06975 -4.2 -4.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03315 -4.1 -1.6 ferrous iron transport protein A compare
MMP_RS06285 -4.0 -3.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04890 -3.4 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06685 -3.4 -11.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02165 -3.3 -12.6 tRNA-dihydrouridine synthase compare
MMP_RS02900 -3.3 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00300 -3.1 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS00515 -3.1 -1.4 DUF655 domain-containing protein compare
MMP_RS01795 -3.1 -1.9 methanogenesis marker 6 protein compare
MMP_RS01755 -3.1 -1.3 DUF2097 domain-containing protein compare
MMP_RS08460 -3.1 -4.0 proteasome-activating nucleotidase compare
MMP_RS06730 -3.0 -2.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS01610 -3.0 -3.2 hypothetical protein compare
MMP_RS07615 -2.8 -10.1 energy-coupling factor ABC transporter permease compare
MMP_RS06230 -2.8 -3.2 helix-turn-helix domain-containing protein compare
MMP_RS00305 -2.8 -3.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS06345 -2.8 -10.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01800 -2.7 -5.5 TIGR00303 family protein compare
MMP_RS01020 -2.7 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08635 -2.7 -2.8 UbiA family prenyltransferase compare
MMP_RS01665 -2.6 -7.1 DUF2111 domain-containing protein compare
MMP_RS06680 -2.6 -9.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07625 -2.6 -5.5 cobalt ECF transporter T component CbiQ compare
MMP_RS07635 -2.6 -9.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08720 -2.5 -2.0 4Fe-4S binding protein compare
MMP_RS02280 -2.5 -1.4 DUF211 domain-containing protein compare
MMP_RS01500 -2.5 -3.2 CBS domain-containing protein compare
MMP_RS05920 -2.4 -0.7 50S ribosomal protein L37e compare
MMP_RS03015 -2.4 -11.6 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -2.4 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07445 -2.4 -6.1 helix-turn-helix domain-containing protein compare
MMP_RS02240 -2.3 -3.0 methanogenesis marker 7 protein compare
MMP_RS05430 -2.3 -3.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS08820 -2.3 -7.0 hypothetical protein compare
MMP_RS03445 -2.3 -1.4 methanogenesis marker 17 protein compare
MMP_RS07620 -2.2 -8.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06350 -2.2 -6.3 HesA/MoeB/ThiF family protein compare
MMP_RS08645 -2.2 -8.4 UPF0179 family protein compare
MMP_RS02235 -2.2 -9.8 CBS domain-containing protein compare
MMP_RS08210 -2.1 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS01005 -2.1 -1.3 riboflavin synthase compare
MMP_RS05515 -2.0 -6.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06315 -2.0 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07630 -2.0 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS07380 -2.0 -2.6 transcription elongation factor Spt5 compare
MMP_RS01175 -1.9 -2.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04585 -1.9 -9.4 AIR synthase related protein compare
MMP_RS03025 -1.9 -5.2 molybdenum cofactor guanylyltransferase compare
MMP_RS00685 -1.9 -4.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04780 -1.8 -2.7 ribonuclease P compare
MMP_RS06855 -1.8 -10.3 hypothetical protein compare
MMP_RS03205 -1.8 -2.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07605 -1.8 -4.1 diadenylate cyclase compare
MMP_RS05845 -1.7 -2.2 tRNA-intron lyase compare
MMP_RS05250 -1.7 -3.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06700 -1.7 -8.4 hypothetical protein compare
MMP_RS01980 -1.7 -11.0 trimeric intracellular cation channel family protein compare
MMP_RS00130 -1.7 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS08650 -1.6 -2.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01265 -1.6 -4.0 hypothetical protein compare
MMP_RS06295 -1.6 -4.5 methanogenesis marker 14 protein compare
MMP_RS07600 -1.6 -2.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00895 -1.6 -3.3 hypothetical protein compare
MMP_RS03305 -1.6 -8.0 winged helix-turn-helix domain-containing protein compare
MMP_RS02345 -1.6 -4.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS09055 -1.6 -1.3 CAP domain-containing protein compare
MMP_RS05020 -1.6 -3.1 hypothetical protein compare
MMP_RS05835 -1.5 -1.2 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS00695 -1.5 -0.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07765 -1.5 -6.7 sodium:alanine symporter family protein compare
MMP_RS06885 -1.5 -2.4 50S ribosome-binding GTPase compare
MMP_RS06725 -1.5 -7.5 hypothetical protein compare
MMP_RS02875 -1.5 -7.5 chorismate pyruvate-lyase family protein compare
MMP_RS08745 -1.5 -4.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06720 -1.5 -5.5 response regulator transcription factor compare
MMP_RS07425 -1.5 -5.5 GTP-binding protein compare
MMP_RS00320 -1.4 -2.1 class I SAM-dependent methyltransferase compare
MMP_RS03580 -1.4 -2.5 signal recognition particle-docking protein FtsY compare
MMP_RS03600 -1.4 -2.1 triose-phosphate isomerase compare
MMP_RS06175 -1.4 -4.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS05865 -1.3 -3.2 hypothetical protein compare
MMP_RS06475 -1.3 -2.8 FAD-dependent oxidoreductase compare
MMP_RS08435 -1.3 -2.7 Era-like GTP-binding protein compare
MMP_RS07545 -1.3 -0.7 HTH domain-containing protein compare
MMP_RS02340 -1.3 -2.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04685 -1.3 -2.5 DUF126 domain-containing protein compare
MMP_RS06120 -1.3 -2.3 UPF0147 family protein compare
MMP_RS06625 -1.3 -1.3 DNA primase compare
MMP_RS06200 -1.3 -7.0 M24 family metallopeptidase compare
MMP_RS05510 -1.3 -5.7 Rrf2 family transcriptional regulator compare
MMP_RS06895 -1.3 -1.3 selenocysteine-specific translation elongation factor compare
MMP_RS03640 -1.3 -2.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06020 -1.3 -4.4 archaeoflavoprotein AfpA compare
MMP_RS01325 -1.3 -1.4 dihydroneopterin aldolase family protein compare
MMP_RS06715 -1.3 -7.4 cache domain-containing protein compare
MMP_RS06400 -1.3 -1.3 4Fe-4S binding protein compare
MMP_RS00115 -1.3 -7.1 radical SAM protein compare
MMP_RS05540 -1.2 -2.4 hypothetical protein compare
MMP_RS01985 -1.2 -4.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS03250 -1.2 -2.9 MJ1244 family protein compare
MMP_RS01380 -1.2 -3.6 PHP domain-containing protein compare
MMP_RS03035 -1.2 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08715 -1.2 -1.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08675 -1.2 -2.3 class III signal peptide-containing protein compare
MMP_RS09025 -1.2 -1.3 hypothetical protein compare
MMP_RS06270 -1.1 -3.9 TIGR00300 family protein compare
MMP_RS01225 -1.1 -3.1 DUF5379 domain-containing protein compare
MMP_RS04870 -1.1 -2.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS03475 -1.1 -0.6 hypothetical protein compare
MMP_RS05545 -1.1 -4.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06980 -1.1 -5.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07860 -1.1 -0.7 hypothetical protein compare
MMP_RS00110 -1.1 -2.1 hypothetical protein compare
MMP_RS08195 -1.1 -4.8 hypothetical protein compare
MMP_RS03095 -1.1 -4.5 diphthine synthase compare
MMP_RS03960 -1.1 -0.9 hypothetical protein compare
MMP_RS00310 -1.0 -6.6 CBS domain-containing protein compare
MMP_RS03110 -1.0 -4.1 glycosyltransferase family 2 protein compare
MMP_RS07200 -1.0 -4.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00915 -1.0 -3.6 DUF116 domain-containing protein compare
MMP_RS07365 -1.0 -6.1 2-phosphoglycerate kinase compare
MMP_RS03400 -1.0 -2.0 archease compare
MMP_RS01220 -1.0 -4.7 hypothetical protein compare
MMP_RS06110 -1.0 -2.6 ATP-dependent protease LonB compare
MMP_RS09020 -1.0 -1.0 hypothetical protein compare
MMP_RS07775 -1.0 -2.7 alanine dehydrogenase compare
MMP_RS06865 -1.0 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08915 -1.0 -1.6 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS07115 -1.0 -3.9 MBL fold metallo-hydrolase compare
MMP_RS02195 -1.0 -2.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01720 -0.9 -1.3 replication factor C large subunit compare
MMP_RS04775 -0.9 -2.3 adenosylhomocysteinase compare
MMP_RS01545 -0.9 -1.0 CBS domain-containing protein compare
MMP_RS04485 -0.9 -5.7 putative beta-lysine N-acetyltransferase compare
MMP_RS05815 -0.9 -1.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07735 -0.9 -0.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04615 -0.9 -1.7 PDGLE domain-containing protein compare
MMP_RS03770 -0.9 -4.1 hydroxylamine reductase conserved
MMP_RS00985 -0.8 -2.4 CDC48 family AAA ATPase compare
MMP_RS05800 -0.8 -4.8 B12-binding domain-containing radical SAM protein compare
MMP_RS05105 -0.8 -5.8 thymidylate synthase compare
MMP_RS04990 -0.8 -3.8 aquaporin family protein compare
MMP_RS02175 -0.8 -0.7 DUF1611 domain-containing protein compare
MMP_RS02170 -0.8 -3.3 CBS domain-containing protein compare
MMP_RS00520 -0.8 -1.0 RNA polymerase Rpb4 family protein compare
MMP_RS03560 -0.8 -6.3 Na+/H+ antiporter NhaC family protein compare
MMP_RS03555 -0.8 -3.9 transcriptional regulator compare
MMP_RS01335 -0.8 -1.8 prefoldin subunit beta compare
MMP_RS08300 -0.8 -0.7 metal-sulfur cluster assembly factor compare
MMP_RS01100 -0.8 -1.4 ABC transporter ATP-binding protein compare
MMP_RS05550 -0.8 -0.5 cation:proton antiporter compare
MMP_RS01085 -0.8 -1.5 hypothetical protein compare
MMP_RS05265 -0.8 -1.3 2-isopropylmalate synthase compare
MMP_RS05095 -0.8 -2.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS08860 -0.8 -3.4 MinD/ParA family protein compare
MMP_RS03155 -0.8 -3.5 precorrin-6A reductase compare
MMP_RS07005 -0.8 -0.4 4Fe-4S binding protein compare
MMP_RS08200 -0.8 -6.2 archaeosine synthase subunit alpha compare
MMP_RS04980 -0.7 -5.7 DUF2193 domain-containing protein compare
MMP_RS01180 -0.7 -0.8 XTP/dITP diphosphatase compare
MMP_RS03700 -0.7 -3.2 sodium:proton antiporter compare
MMP_RS07750 -0.7 -1.8 DUF357 domain-containing protein compare
MMP_RS07525 -0.7 -3.6 4Fe-4S binding protein compare
MMP_RS08840 -0.7 -4.3 class I SAM-dependent methyltransferase compare
MMP_RS07755 -0.7 -0.9 DUF555 domain-containing protein compare
MMP_RS05580 -0.7 -4.9 glycosyltransferase compare
MMP_RS01790 -0.7 -2.3 restriction endonuclease compare
MMP_RS01575 -0.7 -2.8 aldolase compare
MMP_RS00185 -0.7 -4.5 potassium channel protein compare
MMP_RS08000 -0.7 -4.6 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS01290 -0.7 -3.9 class III signal peptide-containing protein compare
MMP_RS06015 -0.7 -2.7 flavodoxin family protein compare
MMP_RS02145 -0.7 -2.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS02025 -0.6 -4.3 DNA-directed DNA polymerase compare
MMP_RS04480 -0.6 -4.9 lysine 2 3-aminomutase compare
MMP_RS05635 -0.6 -4.5 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS06940 -0.6 -1.8 polyprenyl diphosphate synthase compare
MMP_RS05245 -0.6 -3.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS03775 -0.6 -2.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS05555 -0.6 -0.9 DUF4040 domain-containing protein compare
MMP_RS05925 -0.6 -1.7 small nuclear ribonucleoprotein compare
MMP_RS00050 -0.6 -2.6 AarF/UbiB family protein compare
MMP_RS05345 -0.6 -2.1 hypothetical protein compare
MMP_RS04090 -0.6 -1.3 hypothetical protein compare
MMP_RS03550 -0.6 -1.1 DUF2124 domain-containing protein compare
MMP_RS06710 -0.6 -3.0 selenium-binding protein compare
MMP_RS00720 -0.6 -2.6 metal-dependent hydrolase compare
MMP_RS07580 -0.6 -1.2 DUF356 domain-containing protein compare
MMP_RS06290 -0.6 -1.8 DNA repair and recombination protein RadA compare
MMP_RS06930 -0.6 -3.9 MBL fold metallo-hydrolase compare
MMP_RS06215 -0.6 -0.8 30S ribosomal protein S6e compare
MMP_RS08855 -0.6 -3.9 hypothetical protein compare
MMP_RS06095 -0.6 -2.4 ABC transporter ATP-binding protein compare
MMP_RS03440 -0.6 -0.8 MoaD/ThiS family protein compare
MMP_RS03210 -0.6 -4.1 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS06630 -0.6 -0.4 UPF0058 family protein compare
MMP_RS01495 -0.6 -3.4 TraB/GumN family protein compare
MMP_RS00810 -0.6 -3.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01270 -0.6 -4.4 prepilin peptidase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments

For stress Sodium nitrite across organisms