Experiment set13S57 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A_PIPES with Cobalt chloride hexahydrate 256 uM

200 most important genes:

  gene name fitness t score description  
LRK54_RS17900 -4.8 -3.3 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS05110 -4.3 -1.7 glycosyltransferase family 4 protein compare
LRK54_RS17505 -3.6 -5.4 preprotein translocase subunit SecG compare
LRK54_RS09345 -3.4 -2.3 ATP-binding protein compare
LRK54_RS02955 -3.3 -4.5 efflux transporter outer membrane subunit compare
LRK54_RS01280 -3.1 -2.1 MBL fold metallo-hydrolase compare
LRK54_RS16945 -3.1 -5.8 sigma-E factor negative regulatory protein compare
LRK54_RS16940 -3.0 -5.4 RNA polymerase sigma factor RpoE compare
LRK54_RS16150 -2.9 -3.8 cell wall hydrolase compare
LRK54_RS12860 -2.8 -5.4 RNase adapter RapZ compare
LRK54_RS10065 -2.8 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS03290 -2.8 -1.9 RIP metalloprotease RseP compare
LRK54_RS00670 -2.8 -6.2 OmpA family protein compare
LRK54_RS02535 -2.8 -8.0 50S ribosomal protein L9 compare
LRK54_RS11375 -2.8 -7.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS02975 -2.7 -13.4 alpha/beta fold hydrolase compare
LRK54_RS08930 -2.7 -5.5 XRE family transcriptional regulator compare
LRK54_RS01680 -2.7 -7.6 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS16755 -2.7 -3.6 SurA N-terminal domain-containing protein compare
LRK54_RS04585 -2.7 -8.7 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS00305 -2.6 -11.6 asparagine synthase B compare
LRK54_RS05985 -2.6 -2.5 response regulator transcription factor compare
LRK54_RS11565 -2.6 -3.9 anthranilate phosphoribosyltransferase compare
LRK54_RS05650 -2.6 -3.9 ABC transporter ATP-binding protein compare
LRK54_RS05980 -2.6 -4.9 ATP-binding protein compare
LRK54_RS13760 -2.5 -10.7 trypsin-like peptidase domain-containing protein compare
LRK54_RS11170 -2.5 -5.0 NADP-dependent malic enzyme compare
LRK54_RS05660 -2.5 -11.4 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS15035 -2.5 -6.9 M48 family metalloprotease compare
LRK54_RS05785 -2.4 -7.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS07060 -2.4 -9.7 DedA family protein compare
LRK54_RS02495 -2.4 -6.4 50S ribosomal protein L19 compare
LRK54_RS16730 -2.4 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS02520 -2.4 -7.3 cytochrome c biogenesis protein CcsA compare
LRK54_RS05655 -2.4 -2.8 ABC transporter permease compare
LRK54_RS03125 -2.4 -2.3 preprotein translocase subunit YajC compare
LRK54_RS05725 -2.3 -7.6 DUF4398 domain-containing protein compare
LRK54_RS03710 -2.3 -10.1 tetratricopeptide repeat protein compare
LRK54_RS03040 -2.3 -6.5 MtnX-like HAD-IB family phosphatase compare
LRK54_RS06785 -2.2 -3.0 protein-disulfide reductase DsbD compare
LRK54_RS06795 -2.2 -6.5 type II 3-dehydroquinate dehydratase compare
LRK54_RS05540 -2.2 -4.2 glycosyltransferase family 2 protein compare
LRK54_RS08595 -2.2 -8.9 shikimate dehydrogenase compare
LRK54_RS10150 -2.2 -2.1 DNA topoisomerase I compare
LRK54_RS12775 -2.2 -10.6 CDF family Co(II)/Ni(II) efflux transporter DmeF conserved
LRK54_RS17270 -2.2 -5.1 DNA translocase FtsK compare
LRK54_RS05740 -2.1 -6.2 phosphoglycerate kinase compare
LRK54_RS10170 -2.1 -16.5 YbaY family lipoprotein compare
LRK54_RS02950 -2.1 -13.7 sensor histidine kinase compare
LRK54_RS02970 -2.1 -4.3 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS10355 -2.1 -3.6 threonine synthase compare
LRK54_RS06420 -2.1 -1.8 hypothetical protein compare
LRK54_RS11290 -2.1 -2.4 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS15105 -2.1 -6.2 polynucleotide adenylyltransferase PcnB compare
LRK54_RS11560 -2.0 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS02895 -2.0 -11.9 rhomboid family intramembrane serine protease compare
LRK54_RS00085 -2.0 -2.7 tetratricopeptide repeat protein compare
LRK54_RS14590 -2.0 -8.7 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02945 -2.0 -8.0 response regulator compare
LRK54_RS05670 -2.0 -4.7 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS18050 -2.0 -13.2 lipopolysaccharide assembly protein LapB compare
LRK54_RS12460 -1.9 -2.9 hypothetical protein compare
LRK54_RS02180 -1.9 -8.2 UvrD-helicase domain-containing protein compare
LRK54_RS05665 -1.9 -4.3 dTDP-glucose 4,6-dehydratase compare
LRK54_RS02960 -1.9 -11.7 ABC transporter permease compare
LRK54_RS01685 -1.9 -11.2 tryptophan synthase subunit beta compare
LRK54_RS00395 -1.9 -4.3 prephenate dehydratase compare
LRK54_RS00680 -1.9 -9.3 TerC family protein compare
LRK54_RS00440 -1.9 -7.6 high frequency lysogenization protein HflD compare
LRK54_RS03015 -1.8 -9.9 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS05630 -1.8 -7.4 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS02175 -1.8 -9.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS03035 -1.8 -10.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS00935 -1.8 -9.6 sulfite exporter TauE/SafE family protein compare
LRK54_RS04140 -1.8 -6.1 inositol-phosphate phosphatase compare
LRK54_RS07310 -1.8 -10.2 pteridine reductase compare
LRK54_RS00080 -1.8 -7.9 helix-turn-helix domain-containing protein compare
LRK54_RS18055 -1.8 -5.9 glycosyltransferase family 4 protein compare
LRK54_RS09805 -1.8 -6.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS04720 -1.7 -8.0 phosphoribosylformylglycinamidine synthase compare
LRK54_RS04350 -1.7 -5.8 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS05535 -1.7 -5.8 glycosyltransferase family 2 protein compare
LRK54_RS06685 -1.7 -11.5 TolC family outer membrane protein compare
LRK54_RS02855 -1.7 -5.9 type I restriction-modification system subunit M compare
LRK54_RS00620 -1.7 -9.8 FtsH protease activity modulator HflK compare
LRK54_RS14845 -1.7 -1.6 LysR family transcriptional regulator compare
LRK54_RS05200 -1.7 -3.1 hypothetical protein compare
LRK54_RS14670 -1.7 -1.6 NrsF family protein compare
LRK54_RS04625 -1.6 -10.7 serine hydroxymethyltransferase compare
LRK54_RS17135 -1.6 -1.4 hypothetical protein compare
LRK54_RS11570 -1.6 -4.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS03185 -1.6 -5.7 phosphoglycerate dehydrogenase compare
LRK54_RS01235 -1.6 -13.1 Slp family lipoprotein compare
LRK54_RS02275 -1.6 -4.3 enoyl-CoA hydratase-related protein compare
LRK54_RS16050 -1.6 -1.2 tetratricopeptide repeat protein compare
LRK54_RS00775 -1.6 -9.2 translational GTPase TypA compare
LRK54_RS04710 -1.6 -3.6 glycosyltransferase family 2 protein compare
LRK54_RS17230 -1.6 -9.1 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS06470 -1.5 -9.8 carboxy terminal-processing peptidase compare
LRK54_RS11415 -1.5 -10.5 anthranilate synthase component I compare
LRK54_RS08730 -1.5 -12.3 DUF481 domain-containing protein conserved
LRK54_RS12865 -1.5 -6.7 HPr(Ser) kinase/phosphatase compare
LRK54_RS12295 -1.5 -3.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS12945 -1.5 -7.7 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06210 -1.5 -2.8 hypothetical protein compare
LRK54_RS00805 -1.5 -4.0 segregation/condensation protein A compare
LRK54_RS05640 -1.5 -7.5 GDP-mannose 4,6-dehydratase compare
LRK54_RS07220 -1.5 -6.8 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS03895 -1.4 -10.0 lipopolysaccharide biosynthesis protein compare
LRK54_RS11175 -1.4 -5.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS05645 -1.4 -10.8 glycosyltransferase compare
LRK54_RS01295 -1.4 -1.8 DUF6165 family protein compare
LRK54_RS00615 -1.4 -6.8 protease modulator HflC compare
LRK54_RS05710 -1.4 -10.2 pyridoxal-phosphate dependent enzyme compare
LRK54_RS00705 -1.4 -8.0 alkyl hydroperoxide reductase subunit C compare
LRK54_RS06875 -1.4 -0.9 YiiD C-terminal domain-containing protein compare
LRK54_RS05720 -1.4 -6.7 hypothetical protein compare
LRK54_RS17225 -1.4 -3.3 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS02560 -1.4 -9.8 MalM family protein compare
LRK54_RS05415 -1.4 -6.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS05615 -1.3 -9.6 hypothetical protein compare
LRK54_RS00400 -1.3 -9.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS03005 -1.3 -9.9 GNAT family N-acetyltransferase compare
LRK54_RS05635 -1.3 -7.0 dehydrogenase compare
LRK54_RS13360 -1.3 -10.5 gamma-glutamyltransferase conserved
LRK54_RS17205 -1.3 -4.3 heavy metal translocating P-type ATPase compare
LRK54_RS07215 -1.3 -5.1 cytochrome c4 compare
LRK54_RS05060 -1.3 -2.6 carbohydrate kinase compare
LRK54_RS09365 -1.2 -7.4 FecR family protein compare
LRK54_RS02475 -1.2 -9.0 TRZ/ATZ family hydrolase compare
LRK54_RS09385 -1.2 -2.3 DUF3363 domain-containing protein compare
LRK54_RS06425 -1.2 -1.9 ribonucleoside-diphosphate reductase compare
LRK54_RS06675 -1.2 -6.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS10950 -1.2 -8.4 S41 family peptidase compare
LRK54_RS06895 -1.2 -2.2 hotdog fold thioesterase compare
LRK54_RS07980 -1.2 -2.4 nitrogen regulation protein NR(I) compare
LRK54_RS18060 -1.2 -4.4 polysaccharide biosynthesis protein compare
LRK54_RS13835 -1.2 -7.4 YhgN family NAAT transporter compare
LRK54_RS00495 -1.2 -8.2 ribonuclease R compare
LRK54_RS06495 -1.1 -7.8 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS05495 -1.1 -3.3 met regulon transcriptional regulator MetJ compare
LRK54_RS02185 -1.1 -3.7 exodeoxyribonuclease V subunit alpha compare
LRK54_RS14560 -1.1 -6.8 hypothetical protein compare
LRK54_RS17215 -1.1 -3.0 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS11975 -1.1 -5.1 SLC13 family permease compare
LRK54_RS12715 -1.1 -8.7 ATP-dependent RNA helicase HrpA conserved
LRK54_RS04305 -1.1 -2.2 shikimate kinase compare
LRK54_RS12830 -1.1 -4.3 YeiH family protein compare
LRK54_RS10165 -1.0 -7.6 phosphoribosylamine--glycine ligase compare
LRK54_RS13675 -1.0 -0.9 methyl-accepting chemotaxis protein compare
LRK54_RS08540 -1.0 -4.9 DUF484 family protein compare
LRK54_RS12855 -1.0 -4.1 PTS fructose transporter subunit IIA compare
LRK54_RS13620 -1.0 -1.9 hypothetical protein compare
LRK54_RS00565 -1.0 -3.0 RNA polymerase sigma factor compare
LRK54_RS03405 -1.0 -5.8 ribonuclease G compare
LRK54_RS14695 -1.0 -7.0 rhomboid family intramembrane serine protease compare
LRK54_RS02335 -1.0 -5.2 FUSC family protein compare
LRK54_RS06745 -1.0 -4.3 mitochondrial fission ELM1 family protein compare
LRK54_RS04025 -1.0 -1.1 diacylglycerol kinase compare
LRK54_RS06255 -1.0 -1.3 YbaN family protein compare
LRK54_RS02090 -1.0 -7.8 NAD-glutamate dehydrogenase compare
LRK54_RS11800 -1.0 -7.3 RidA family protein compare
LRK54_RS01795 -1.0 -6.2 hypothetical protein compare
LRK54_RS00420 -1.0 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS13340 -1.0 -4.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK54_RS13780 -0.9 -3.9 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS04630 -0.9 -1.6 energy-dependent translational throttle protein EttA compare
LRK54_RS00695 -0.9 -3.6 methylisocitrate lyase compare
LRK54_RS16735 -0.9 -7.5 endopeptidase La compare
LRK54_RS04100 -0.9 -1.6 ATP-binding cassette domain-containing protein compare
LRK54_RS04920 -0.9 -4.7 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS04615 -0.9 -2.5 transcriptional regulator NrdR compare
LRK54_RS12135 -0.9 -6.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
LRK54_RS02700 -0.9 -3.4 ribosome silencing factor compare
LRK54_RS00815 -0.9 -3.8 pseudouridine synthase compare
LRK54_RS04945 -0.9 -7.6 TonB-dependent receptor compare
LRK54_RS03925 -0.9 -6.0 glycosyltransferase family 4 protein compare
LRK54_RS15500 -0.9 -1.6 hypothetical protein compare
LRK54_RS07085 -0.9 -6.8 heme o synthase compare
LRK54_RS09125 -0.9 -3.6 hypothetical protein compare
LRK54_RS15090 -0.9 -4.0 hypothetical protein compare
LRK54_RS04965 -0.8 -4.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK54_RS10555 -0.8 -3.7 GIY-YIG nuclease family protein compare
LRK54_RS01340 -0.8 -6.3 amidophosphoribosyltransferase compare
LRK54_RS15040 -0.8 -1.9 glutaredoxin 3 compare
LRK54_RS05855 -0.8 -3.3 MarR family transcriptional regulator compare
LRK54_RS06720 -0.8 -5.6 glycosyltransferase compare
LRK54_RS17400 -0.8 -1.1 hypothetical protein compare
LRK54_RS01585 -0.8 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS09725 -0.8 -1.6 phosphopantetheine-binding protein compare
LRK54_RS05770 -0.8 -6.5 energy transducer TonB compare
LRK54_RS16615 -0.8 -1.4 phosphopyruvate hydratase compare
LRK54_RS07020 -0.8 -1.3 ABC transporter permease compare
LRK54_RS16535 -0.8 -4.3 VIT family protein compare
LRK54_RS16660 -0.8 -5.3 VTT domain-containing protein compare
LRK54_RS01700 -0.8 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS12770 -0.8 -4.5 VOC family protein compare
LRK54_RS05575 -0.8 -5.1 class I SAM-dependent methyltransferase compare
LRK54_RS06330 -0.8 -2.2 OmpH family outer membrane protein compare
LRK54_RS00625 -0.8 -5.4 GTPase HflX compare


Specific Phenotypes

For 7 genes in this experiment

For stress Cobalt chloride hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Cobalt chloride hexahydrate across organisms