Experiment set13S57 for Phocaeicola vulgatus CL09T03C04

Compare to:

Columbia 1x carbon source complex media

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS11310 -4.1 -6.8 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS11205 -3.3 -2.2 radical SAM protein compare
HMPREF1058_RS03085 -3.2 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS00560 -3.0 -4.8 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14465 -3.0 -3.5 enoyl-ACP reductase compare
HMPREF1058_RS17205 -2.9 -2.8 DUF4199 domain-containing protein compare
HMPREF1058_RS13970 -2.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14130 -2.3 -6.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS04065 -2.2 -2.4 VWA domain-containing protein compare
HMPREF1058_RS04520 -2.2 -1.8 hypothetical protein compare
HMPREF1058_RS02755 -2.2 -1.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS09445 -2.2 -1.9 tyrosine-type recombinase/integrase compare
HMPREF1058_RS17080 -2.2 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS16730 -2.1 -4.4 chorismate synthase compare
HMPREF1058_RS16495 -2.1 -3.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS11490 -2.0 -4.9 redox-regulated ATPase YchF compare
HMPREF1058_RS07735 -2.0 -3.6 chloride channel protein compare
HMPREF1058_RS16500 -2.0 -3.8 OadG family protein compare
HMPREF1058_RS15520 -2.0 -4.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS14225 -2.0 -6.1 polyprenyl synthetase family protein compare
HMPREF1058_RS21685 -1.9 -1.1 hypothetical protein compare
HMPREF1058_RS02800 -1.9 -6.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS02750 -1.9 -1.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17155 -1.8 -3.2 dCMP deaminase family protein compare
HMPREF1058_RS05140 -1.8 -4.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS13965 -1.8 -2.6 hypothetical protein compare
HMPREF1058_RS17130 -1.8 -2.4 tetratricopeptide repeat protein compare
HMPREF1058_RS10920 -1.8 -3.6 viroplasmin family protein compare
HMPREF1058_RS15665 -1.8 -7.6 MFS transporter compare
HMPREF1058_RS11910 -1.7 -8.6 DEAD/DEAH box helicase compare
HMPREF1058_RS18265 -1.7 -3.7 aspartate 1-decarboxylase compare
HMPREF1058_RS11745 -1.6 -5.9 WbqC family protein compare
HMPREF1058_RS07245 -1.6 -4.5 Rne/Rng family ribonuclease compare
HMPREF1058_RS10840 -1.5 -1.5 hypothetical protein compare
HMPREF1058_RS11890 -1.4 -4.3 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS03510 -1.4 -5.1 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS14005 -1.4 -1.9 3-dehydroquinate synthase compare
HMPREF1058_RS12505 -1.4 -4.2 RNA polymerase factor sigma-54 compare
HMPREF1058_RS08535 -1.4 -3.1 elongation factor P compare
HMPREF1058_RS03075 -1.4 -3.8 DNA helicase RecQ compare
HMPREF1058_RS07655 -1.4 -2.1 hypothetical protein compare
HMPREF1058_RS11930 -1.3 -3.5 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS11815 -1.3 -6.1 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS08295 -1.3 -5.3 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS16755 -1.3 -2.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS10270 -1.3 -2.6 hypothetical protein compare
HMPREF1058_RS18895 -1.2 -1.8 hypothetical protein compare
HMPREF1058_RS11220 -1.2 -1.5 RNA methyltransferase compare
HMPREF1058_RS14215 -1.2 -3.3 (d)CMP kinase compare
HMPREF1058_RS03980 -1.2 -1.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS00595 -1.2 -3.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS17940 -1.2 -4.6 alpha-amylase compare
HMPREF1058_RS08520 -1.2 -3.3 DUF59 domain-containing protein compare
HMPREF1058_RS05360 -1.2 -1.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS13730 -1.2 -3.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS04075 -1.2 -2.0 DUF58 domain-containing protein compare
HMPREF1058_RS07670 -1.1 -2.2 HAMP domain-containing histidine kinase compare
HMPREF1058_RS18940 -1.1 -1.9 hypothetical protein compare
HMPREF1058_RS02220 -1.1 -3.3 branched-chain amino acid aminotransferase compare
HMPREF1058_RS12070 -1.1 -2.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS06310 -1.1 -4.7 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS01265 -1.1 -2.1 FHA domain-containing protein compare
HMPREF1058_RS16505 -1.1 -4.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS18525 -1.1 -1.8 hypothetical protein compare
HMPREF1058_RS06190 -1.1 -4.4 aspartate kinase compare
HMPREF1058_RS04995 -1.1 -6.7 putative sulfate exporter family transporter compare
HMPREF1058_RS15265 -1.1 -2.9 queuosine precursor transporter compare
HMPREF1058_RS15395 -1.0 -2.0 dihydroorotase compare
HMPREF1058_RS07635 -1.0 -1.9 50S ribosomal protein L9 compare
HMPREF1058_RS10835 -1.0 -3.7 UDP-galactopyranose mutase compare
HMPREF1058_RS12525 -1.0 -3.3 Na/Pi cotransporter family protein compare
HMPREF1058_RS17040 -1.0 -3.5 NTP transferase domain-containing protein compare
HMPREF1058_RS14600 -1.0 -3.9 DNA alkylation repair protein compare
HMPREF1058_RS09680 -1.0 -2.3 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS06600 -1.0 -2.1 DedA family protein compare
HMPREF1058_RS14590 -1.0 -1.5 AraC family transcriptional regulator compare
HMPREF1058_RS13795 -1.0 -5.8 DUF4954 family protein compare
HMPREF1058_RS0119260 -1.0 -1.3 hypothetical protein compare
HMPREF1058_RS05920 -0.9 -1.9 hypothetical protein compare
HMPREF1058_RS09880 -0.9 -1.2 DUF4134 domain-containing protein compare
HMPREF1058_RS06325 -0.9 -2.9 electron transport complex subunit E compare
HMPREF1058_RS10955 -0.9 -3.6 phosphatase PAP2 family protein compare
HMPREF1058_RS06035 -0.9 -3.9 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS05880 -0.9 -2.1 DUF5063 domain-containing protein compare
HMPREF1058_RS08500 -0.9 -3.7 CidA/LrgA family protein compare
HMPREF1058_RS15965 -0.9 -3.3 recombinase RecA compare
HMPREF1058_RS06560 -0.9 -4.0 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS12490 -0.9 -2.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS06410 -0.9 -1.8 elongation factor 4 compare
HMPREF1058_RS12995 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS03530 -0.9 -0.8 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS0119250 -0.9 -1.9 hypothetical protein compare
HMPREF1058_RS04555 -0.9 -1.6 YqaJ viral recombinase family protein compare
HMPREF1058_RS02970 -0.9 -2.6 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS12775 -0.9 -2.2 hypothetical protein compare
HMPREF1058_RS21490 -0.9 -2.5 hypothetical protein compare
HMPREF1058_RS18695 -0.9 -1.4 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS09700 -0.8 -1.7 methionine--tRNA ligase compare
HMPREF1058_RS02155 -0.8 -4.5 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS09970 -0.8 -1.3 hypothetical protein compare
HMPREF1058_RS14075 -0.8 -2.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS17935 -0.8 -4.9 glycosyltransferase compare
HMPREF1058_RS19210 -0.8 -1.4 hypothetical protein compare
HMPREF1058_RS10335 -0.8 -1.1 hypothetical protein compare
HMPREF1058_RS05775 -0.8 -3.4 NfeD family protein compare
HMPREF1058_RS03110 -0.8 -5.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS01400 -0.8 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS09990 -0.8 -4.6 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS04025 -0.8 -4.2 hypothetical protein compare
HMPREF1058_RS17060 -0.8 -3.2 HAD family hydrolase compare
HMPREF1058_RS11380 -0.8 -3.6 DUF4271 domain-containing protein compare
HMPREF1058_RS15375 -0.8 -1.0 DUF4369 domain-containing protein compare
HMPREF1058_RS06345 -0.7 -2.4 Fe-S cluster domain-containing protein compare
HMPREF1058_RS09440 -0.7 -2.9 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS04015 -0.7 -3.6 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS18465 -0.7 -3.3 glycosyltransferase family 4 protein compare
HMPREF1058_RS16240 -0.7 -2.8 o-succinylbenzoate synthase compare
HMPREF1058_RS11535 -0.7 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS10055 -0.7 -5.7 translational GTPase TypA compare
HMPREF1058_RS20485 -0.7 -0.9 mobilization protein compare
HMPREF1058_RS10360 -0.7 -1.2 hypothetical protein compare
HMPREF1058_RS11940 -0.7 -1.4 DUF3836 domain-containing protein compare
HMPREF1058_RS13635 -0.7 -2.4 gliding motility lipoprotein GldH compare
HMPREF1058_RS18960 -0.7 -2.1 hypothetical protein compare
HMPREF1058_RS09610 -0.7 -3.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS17815 -0.7 -2.6 MFS transporter compare
HMPREF1058_RS19015 -0.7 -1.9 hypothetical protein compare
HMPREF1058_RS17385 -0.7 -1.8 DUF4248 domain-containing protein compare
HMPREF1058_RS01650 -0.7 -2.5 hypothetical protein compare
HMPREF1058_RS04550 -0.7 -1.0 hypothetical protein compare
HMPREF1058_RS0119935 -0.7 -3.0 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS11915 -0.7 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05615 -0.7 -0.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16870 -0.7 -2.9 type III pantothenate kinase compare
HMPREF1058_RS01800 -0.7 -2.2 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS10285 -0.7 -1.8 hypothetical protein compare
HMPREF1058_RS01970 -0.6 -2.6 hypothetical protein compare
HMPREF1058_RS14305 -0.6 -1.2 DNA topoisomerase 3 compare
HMPREF1058_RS15670 -0.6 -3.6 galactose mutarotase compare
HMPREF1058_RS04050 -0.6 -2.1 protein BatD compare
HMPREF1058_RS14220 -0.6 -2.0 energy transducer TonB compare
HMPREF1058_RS05230 -0.6 -2.6 RNA methyltransferase compare
HMPREF1058_RS09960 -0.6 -0.8 hypothetical protein compare
HMPREF1058_RS16530 -0.6 -2.8 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1058_RS10495 -0.6 -1.2 rhomboid family intramembrane serine protease compare
HMPREF1058_RS17395 -0.6 -1.0 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS04910 -0.6 -1.3 hypothetical protein compare
HMPREF1058_RS06540 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS04080 -0.6 -1.7 AAA family ATPase compare
HMPREF1058_RS09795 -0.6 -2.2 DUF1896 domain-containing protein compare
HMPREF1058_RS17765 -0.6 -2.3 Do family serine endopeptidase compare
HMPREF1058_RS00515 -0.6 -3.1 YicC family protein compare
HMPREF1058_RS04575 -0.6 -1.0 hypothetical protein compare
HMPREF1058_RS09890 -0.6 -0.7 DUF3876 domain-containing protein compare
HMPREF1058_RS11500 -0.6 -3.4 DNA polymerase I compare
HMPREF1058_RS17930 -0.6 -3.9 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS05410 -0.6 -1.7 RNA polymerase sigma factor compare
HMPREF1058_RS04375 -0.6 -2.4 carbon-nitrogen hydrolase compare
HMPREF1058_RS12595 -0.6 -0.7 hypothetical protein compare
HMPREF1058_RS17035 -0.6 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS10330 -0.5 -2.1 hypothetical protein compare
HMPREF1058_RS06195 -0.5 -2.4 diaminopimelate decarboxylase compare
HMPREF1058_RS08615 -0.5 -2.9 RluA family pseudouridine synthase compare
HMPREF1058_RS03910 -0.5 -2.7 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS07040 -0.5 -3.4 tetratricopeptide repeat protein compare
HMPREF1058_RS02150 -0.5 -3.3 DUF3440 domain-containing protein compare
HMPREF1058_RS14145 -0.5 -2.6 nucleoside deaminase compare
HMPREF1058_RS15435 -0.5 -3.1 hypothetical protein compare
HMPREF1058_RS11040 -0.5 -2.1 polysaccharide deacetylase family protein compare
HMPREF1058_RS03565 -0.5 -1.8 DUF3990 domain-containing protein compare
HMPREF1058_RS06225 -0.5 -1.2 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS10995 -0.5 -2.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07465 -0.5 -1.3 S26 family signal peptidase compare
HMPREF1058_RS18570 -0.5 -1.5 GNAT family N-acetyltransferase compare
HMPREF1058_RS13205 -0.5 -1.5 DNA primase compare
HMPREF1058_RS04805 -0.5 -2.1 hypothetical protein compare
HMPREF1058_RS04215 -0.5 -2.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS19110 -0.5 -3.3 hypothetical protein compare
HMPREF1058_RS17050 -0.5 -2.3 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS17045 -0.5 -1.4 hypothetical protein compare
HMPREF1058_RS04185 -0.5 -2.8 hypothetical protein compare
HMPREF1058_RS18820 -0.5 -2.5 PepSY-like domain-containing protein compare
HMPREF1058_RS15440 -0.5 -3.6 tetratricopeptide repeat protein compare
HMPREF1058_RS02065 -0.5 -0.7 hypothetical protein compare
HMPREF1058_RS07575 -0.5 -2.0 MCE family protein compare
HMPREF1058_RS06595 -0.5 -2.9 hypothetical protein compare
HMPREF1058_RS01715 -0.5 -1.8 LysO family transporter compare
HMPREF1058_RS05620 -0.5 -1.1 HipA N-terminal domain-containing protein compare
HMPREF1058_RS18400 -0.5 -2.4 RidA family protein compare
HMPREF1058_RS13230 -0.5 -2.2 hypothetical protein compare
HMPREF1058_RS21305 -0.5 -1.7 hypothetical protein compare
HMPREF1058_RS21355 -0.5 -1.6 mobilization protein compare
HMPREF1058_RS04950 -0.5 -1.1 hypothetical protein compare
HMPREF1058_RS05905 -0.5 -2.1 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS03245 -0.5 -0.9 thiamine phosphate synthase compare
HMPREF1058_RS21600 -0.5 -2.6 histidine kinase compare
HMPREF1058_RS06040 -0.5 -2.1 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS06900 -0.5 -1.3 P-II family nitrogen regulator compare
HMPREF1058_RS15430 -0.5 -3.2 aspartate-alanine antiporter compare
HMPREF1058_RS12980 -0.5 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source complex media experiments

For carbon source complex media Columbia across organisms