Experiment set13S53 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
LRK54_RS05980 -3.1 -3.0 ATP-binding protein compare
LRK54_RS16940 -2.8 -5.4 RNA polymerase sigma factor RpoE compare
LRK54_RS05985 -2.8 -1.9 response regulator transcription factor compare
LRK54_RS03290 -2.7 -1.9 RIP metalloprotease RseP compare
LRK54_RS06785 -2.7 -3.1 protein-disulfide reductase DsbD compare
LRK54_RS00085 -2.7 -2.5 tetratricopeptide repeat protein compare
LRK54_RS05415 -2.5 -10.8 TetR/AcrR family transcriptional regulator compare
LRK54_RS12460 -2.4 -2.3 hypothetical protein compare
LRK54_RS17225 -2.4 -3.6 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS11290 -2.4 -2.3 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS11170 -2.3 -5.5 NADP-dependent malic enzyme compare
LRK54_RS03675 -2.3 -2.2 redox-regulated ATPase YchF compare
LRK54_RS16755 -2.3 -4.6 SurA N-terminal domain-containing protein compare
LRK54_RS00670 -2.2 -6.6 OmpA family protein compare
LRK54_RS00080 -2.1 -10.0 helix-turn-helix domain-containing protein compare
LRK54_RS05655 -2.1 -3.4 ABC transporter permease compare
LRK54_RS15035 -2.1 -7.8 M48 family metalloprotease compare
LRK54_RS17505 -2.1 -4.5 preprotein translocase subunit SecG compare
LRK54_RS04585 -2.1 -8.3 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS05110 -1.9 -1.3 glycosyltransferase family 4 protein compare
LRK54_RS17230 -1.9 -9.4 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS17205 -1.8 -5.2 heavy metal translocating P-type ATPase compare
LRK54_RS11175 -1.8 -7.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12865 -1.8 -7.5 HPr(Ser) kinase/phosphatase compare
LRK54_RS02275 -1.8 -4.7 enoyl-CoA hydratase-related protein compare
LRK54_RS13760 -1.8 -8.4 trypsin-like peptidase domain-containing protein compare
LRK54_RS16730 -1.7 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00305 -1.7 -9.9 asparagine synthase B compare
LRK54_RS10855 -1.7 -4.0 protein-export chaperone SecB compare
LRK54_RS12855 -1.7 -5.5 PTS fructose transporter subunit IIA compare
LRK54_RS00675 -1.6 -9.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS17270 -1.6 -4.6 DNA translocase FtsK compare
LRK54_RS03125 -1.6 -2.3 preprotein translocase subunit YajC compare
LRK54_RS11565 -1.6 -3.5 anthranilate phosphoribosyltransferase compare
LRK54_RS17215 -1.6 -3.2 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS15765 -1.6 -1.6 hypothetical protein compare
LRK54_RS00635 -1.5 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS11375 -1.5 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS01800 -1.5 -2.6 dCTP deaminase compare
LRK54_RS02855 -1.5 -5.5 type I restriction-modification system subunit M compare
LRK54_RS12860 -1.5 -5.0 RNase adapter RapZ compare
LRK54_RS06675 -1.5 -7.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS06685 -1.5 -10.6 TolC family outer membrane protein compare
LRK54_RS00615 -1.4 -7.1 protease modulator HflC compare
LRK54_RS00695 -1.4 -4.9 methylisocitrate lyase compare
LRK54_RS05785 -1.4 -6.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05200 -1.4 -3.2 hypothetical protein compare
LRK54_RS04720 -1.4 -6.9 phosphoribosylformylglycinamidine synthase compare
LRK54_RS00620 -1.4 -8.3 FtsH protease activity modulator HflK compare
LRK54_RS02535 -1.4 -5.7 50S ribosomal protein L9 compare
LRK54_RS05650 -1.3 -4.7 ABC transporter ATP-binding protein compare
LRK54_RS17160 -1.3 -1.9 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS01685 -1.3 -8.3 tryptophan synthase subunit beta compare
LRK54_RS07195 -1.3 -1.4 hypothetical protein compare
LRK54_RS14670 -1.3 -1.7 NrsF family protein compare
LRK54_RS15105 -1.3 -4.8 polynucleotide adenylyltransferase PcnB compare
LRK54_RS07020 -1.3 -1.8 ABC transporter permease compare
LRK54_RS04630 -1.3 -2.1 energy-dependent translational throttle protein EttA compare
LRK54_RS01680 -1.2 -4.4 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS10660 -1.2 -1.3 DUF4156 domain-containing protein compare
LRK54_RS07215 -1.2 -5.2 cytochrome c4 compare
LRK54_RS16970 -1.2 -2.9 ribonuclease III compare
LRK54_RS10845 -1.2 -5.8 50S ribosomal protein L33 compare
LRK54_RS10355 -1.2 -2.4 threonine synthase compare
LRK54_RS12945 -1.2 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS04050 -1.2 -6.6 glycoside hydrolase compare
LRK54_RS05440 -1.1 -5.8 hypothetical protein compare
LRK54_RS02955 -1.1 -2.3 efflux transporter outer membrane subunit compare
LRK54_RS14590 -1.1 -5.3 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02895 -1.1 -6.9 rhomboid family intramembrane serine protease compare
LRK54_RS00440 -1.0 -5.1 high frequency lysogenization protein HflD compare
LRK54_RS11570 -1.0 -3.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS06420 -1.0 -1.9 hypothetical protein compare
LRK54_RS08930 -1.0 -3.4 XRE family transcriptional regulator compare
LRK54_RS04305 -1.0 -1.8 shikimate kinase compare
LRK54_RS02090 -1.0 -8.0 NAD-glutamate dehydrogenase compare
LRK54_RS18055 -1.0 -3.8 glycosyltransferase family 4 protein compare
LRK54_RS00775 -1.0 -6.2 translational GTPase TypA compare
LRK54_RS09805 -1.0 -4.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS02440 -1.0 -2.0 RNA polymerase-binding protein DksA compare
LRK54_RS05670 -1.0 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS06470 -1.0 -6.6 carboxy terminal-processing peptidase compare
LRK54_RS12010 -1.0 -4.6 response regulator transcription factor compare
LRK54_RS06280 -1.0 -1.4 alpha/beta hydrolase compare
LRK54_RS13830 -0.9 -5.2 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS12735 -0.9 -2.3 NAD-dependent epimerase/dehydratase family protein compare
LRK54_RS00815 -0.9 -3.8 pseudouridine synthase compare
LRK54_RS08595 -0.9 -5.2 shikimate dehydrogenase compare
LRK54_RS01280 -0.9 -1.6 MBL fold metallo-hydrolase compare
LRK54_RS05770 -0.9 -6.8 energy transducer TonB compare
LRK54_RS04210 -0.9 -1.7 YqgE/AlgH family protein compare
LRK54_RS13885 -0.9 -1.8 DUF2249 domain-containing protein compare
LRK54_RS00395 -0.9 -2.4 prephenate dehydratase compare
LRK54_RS10150 -0.9 -0.9 DNA topoisomerase I compare
LRK54_RS00430 -0.8 -1.3 NUDIX hydrolase compare
LRK54_RS04625 -0.8 -5.7 serine hydroxymethyltransferase compare
LRK54_RS05495 -0.8 -2.5 met regulon transcriptional regulator MetJ compare
LRK54_RS11560 -0.8 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS05540 -0.8 -2.7 glycosyltransferase family 2 protein compare
LRK54_RS16955 -0.8 -6.0 translation elongation factor 4 compare
LRK54_RS05665 -0.8 -2.9 dTDP-glucose 4,6-dehydratase compare
LRK54_RS10065 -0.8 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS03920 -0.8 -1.6 hypothetical protein compare
LRK54_RS16720 -0.8 -4.1 trigger factor compare
LRK54_RS07075 -0.8 -5.6 magnesium-translocating P-type ATPase compare
LRK54_RS18050 -0.8 -5.9 lipopolysaccharide assembly protein LapB compare
LRK54_RS10170 -0.8 -6.9 YbaY family lipoprotein compare
LRK54_RS07005 -0.8 -5.1 spore coat protein U domain-containing protein compare
LRK54_RS10920 -0.8 -6.3 DEAD/DEAH box helicase compare
LRK54_RS08750 -0.8 -2.6 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS09345 -0.8 -0.9 ATP-binding protein compare
LRK54_RS01700 -0.8 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS05645 -0.7 -6.1 glycosyltransferase compare
LRK54_RS07460 -0.7 -1.4 hypothetical protein compare
LRK54_RS00805 -0.7 -2.3 segregation/condensation protein A compare
LRK54_RS18060 -0.7 -2.9 polysaccharide biosynthesis protein compare
LRK54_RS02475 -0.7 -5.6 TRZ/ATZ family hydrolase compare
LRK54_RS08045 -0.7 -3.6 DoxX family protein compare
LRK54_RS00630 -0.7 -4.6 RNA chaperone Hfq compare
LRK54_RS07180 -0.7 -1.5 dethiobiotin synthase compare
LRK54_RS00940 -0.7 -4.4 cupin domain-containing protein compare
LRK54_RS14825 -0.7 -3.3 protease HtpX compare
LRK54_RS13910 -0.7 -2.5 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS16615 -0.7 -1.4 phosphopyruvate hydratase compare
LRK54_RS02070 -0.7 -3.1 acyl-CoA dehydrogenase family protein compare
LRK54_RS10360 -0.7 -2.1 homoserine kinase compare
LRK54_RS02185 -0.7 -2.3 exodeoxyribonuclease V subunit alpha compare
LRK54_RS02805 -0.7 -1.6 thioredoxin compare
LRK54_RS04185 -0.7 -0.7 chemotaxis protein CheW compare
LRK54_RS12665 -0.7 -4.2 autotransporter assembly complex protein TamA compare
LRK54_RS05535 -0.7 -3.2 glycosyltransferase family 2 protein compare
LRK54_RS00320 -0.7 -1.5 phosphoglycerate mutase compare
LRK54_RS00345 -0.7 -2.1 TraB/GumN family protein compare
LRK54_RS09175 -0.7 -3.4 dUTP diphosphatase compare
LRK54_RS06895 -0.7 -1.2 hotdog fold thioesterase compare
LRK54_RS02950 -0.7 -4.9 sensor histidine kinase compare
LRK54_RS03040 -0.7 -2.1 MtnX-like HAD-IB family phosphatase compare
LRK54_RS11415 -0.7 -5.0 anthranilate synthase component I compare
LRK54_RS06745 -0.7 -3.0 mitochondrial fission ELM1 family protein compare
LRK54_RS11975 -0.7 -3.0 SLC13 family permease compare
LRK54_RS04350 -0.7 -2.8 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS11820 -0.7 -5.0 citrate synthase compare
LRK54_RS15015 -0.6 -2.7 Ppx/GppA family phosphatase compare
LRK54_RS17025 -0.6 -0.7 cold-shock protein compare
LRK54_RS10165 -0.6 -5.0 phosphoribosylamine--glycine ligase compare
LRK54_RS16660 -0.6 -3.9 VTT domain-containing protein compare
LRK54_RS13895 -0.6 -2.2 putative zinc-binding protein compare
LRK54_RS17855 -0.6 -1.8 (2Fe-2S)-binding protein compare
LRK54_RS02975 -0.6 -4.2 alpha/beta fold hydrolase compare
LRK54_RS00565 -0.6 -1.7 RNA polymerase sigma factor compare
LRK54_RS05530 -0.6 -3.2 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS12660 -0.6 -3.6 translocation/assembly module TamB domain-containing protein compare
LRK54_RS06495 -0.6 -4.6 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS04165 -0.6 -1.8 chemotaxis protein CheW compare
LRK54_RS04615 -0.6 -2.8 transcriptional regulator NrdR compare
LRK54_RS04450 -0.6 -2.7 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS00435 -0.6 -4.8 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS05500 -0.6 -1.1 hypothetical protein compare
LRK54_RS12300 -0.6 -2.2 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS05710 -0.6 -4.6 pyridoxal-phosphate dependent enzyme compare
LRK54_RS02180 -0.6 -3.4 UvrD-helicase domain-containing protein compare
LRK54_RS14845 -0.6 -0.7 LysR family transcriptional regulator compare
LRK54_RS01020 -0.6 -3.3 pha synthase subunit protein compare
LRK54_RS03710 -0.6 -3.0 tetratricopeptide repeat protein compare
LRK54_RS05505 -0.6 -3.3 glycine cleavage system protein GcvH compare
LRK54_RS06515 -0.6 -1.5 rod shape-determining protein MreD compare
LRK54_RS09330 -0.6 -3.9 RNA pyrophosphohydrolase compare
LRK54_RS17760 -0.6 -1.5 cation transporter compare
LRK54_RS06795 -0.6 -2.1 type II 3-dehydroquinate dehydratase compare
LRK54_RS02445 -0.6 -1.5 membrane protein insertion efficiency factor YidD compare
LRK54_RS02945 -0.6 -2.9 response regulator compare
LRK54_RS00495 -0.6 -4.4 ribonuclease R compare
LRK54_RS16945 -0.6 -2.1 sigma-E factor negative regulatory protein compare
LRK54_RS05740 -0.6 -2.5 phosphoglycerate kinase compare
LRK54_RS10305 -0.6 -1.8 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS14545 -0.6 -3.1 formate-dependent phosphoribosylglycinamide formyltransferase compare
LRK54_RS07060 -0.6 -3.3 DedA family protein compare
LRK54_RS04140 -0.6 -2.5 inositol-phosphate phosphatase compare
LRK54_RS10640 -0.6 -1.8 SCP2 sterol-binding domain-containing protein compare
LRK54_RS16650 -0.6 -3.0 5'/3'-nucleotidase SurE compare
LRK54_RS00935 -0.6 -4.0 sulfite exporter TauE/SafE family protein compare
LRK54_RS15925 -0.5 -1.4 carboxymuconolactone decarboxylase family protein compare
LRK54_RS07980 -0.5 -1.4 nitrogen regulation protein NR(I) compare
LRK54_RS05660 -0.5 -3.7 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS13340 -0.5 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK54_RS07310 -0.5 -3.7 pteridine reductase compare
LRK54_RS09820 -0.5 -4.5 cell division protein ZapE compare
LRK54_RS02885 -0.5 -4.2 RNA polymerase-associated protein RapA compare
LRK54_RS05365 -0.5 -1.3 MarR family transcriptional regulator compare
LRK54_RS07220 -0.5 -3.1 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS09525 -0.5 -1.8 DUF2282 domain-containing protein compare
LRK54_RS12295 -0.5 -1.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS06425 -0.5 -1.1 ribonucleoside-diphosphate reductase compare
LRK54_RS01345 -0.5 -1.8 CvpA family protein compare
LRK54_RS00420 -0.5 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS14560 -0.5 -3.3 hypothetical protein compare
LRK54_RS12045 -0.5 -1.9 DUF1611 domain-containing protein compare
LRK54_RS14460 -0.5 -2.8 septum site-determining protein MinD compare
LRK54_RS12670 -0.5 -3.3 glycosyltransferase compare
LRK54_RS16935 -0.5 -4.0 bifunctional diguanylate cyclase/phosphodiesterase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments