Experiment set13S53 for Rhodanobacter denitrificans FW104-10B01

Compare to:

no stress control

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS15485 +1.4 2.9 hypothetical protein compare
LRK54_RS11725 +1.2 1.4 PilZ domain-containing protein compare
LRK54_RS06875 +1.0 1.5 YiiD C-terminal domain-containing protein compare
LRK54_RS15325 +0.9 1.2 hypothetical protein compare
LRK54_RS06155 +0.9 1.3 cysteine dioxygenase compare
LRK54_RS10500 +0.8 2.1 glycerophosphodiester phosphodiesterase compare
LRK54_RS16155 +0.8 1.0 folate-binding protein compare
LRK54_RS15200 +0.8 2.5 AraC family transcriptional regulator compare
LRK54_RS16285 +0.8 2.5 hypothetical protein compare
LRK54_RS14160 +0.7 2.6 cytochrome c compare
LRK54_RS06415 +0.7 0.9 hypothetical protein compare
LRK54_RS01560 +0.6 2.3 carboxymuconolactone decarboxylase family protein compare
LRK54_RS05195 +0.6 2.5 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS15555 +0.6 1.5 YciI family protein compare
LRK54_RS11230 +0.6 1.1 universal stress protein compare
LRK54_RS08775 +0.6 1.4 GNAT family N-acetyltransferase compare
LRK54_RS14480 +0.6 3.2 response regulator transcription factor compare
LRK54_RS16255 +0.6 1.3 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS04255 +0.6 4.1 type IV pilus twitching motility protein PilT compare
LRK54_RS11890 +0.6 1.6 O-acetyl-ADP-ribose deacetylase compare
LRK54_RS06820 +0.6 1.6 Fis family transcriptional regulator compare
LRK54_RS17400 +0.5 1.2 hypothetical protein compare
LRK54_RS12515 +0.5 4.1 hypothetical protein compare
LRK54_RS01910 +0.5 2.4 hypothetical protein compare
LRK54_RS09385 +0.5 1.5 DUF3363 domain-containing protein compare
LRK54_RS10540 +0.5 1.6 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS11925 +0.5 2.0 fumarylacetoacetate hydrolase family protein compare
LRK54_RS08550 +0.5 2.1 lipoprotein compare
LRK54_RS04100 +0.5 1.2 ATP-binding cassette domain-containing protein compare
LRK54_RS16435 +0.5 2.2 helix-turn-helix transcriptional regulator compare
LRK54_RS10645 +0.5 2.4 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
LRK54_RS01295 +0.5 1.2 DUF6165 family protein compare
LRK54_RS13890 +0.5 1.2 hypothetical protein compare
LRK54_RS11690 +0.5 1.2 UPF0149 family protein compare
LRK54_RS13540 +0.5 0.8 flagellar biosynthetic protein FliO compare
LRK54_RS17035 +0.5 1.8 copper homeostasis protein CutC compare
LRK54_RS12080 +0.4 3.1 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS13395 +0.4 1.7 methyl-accepting chemotaxis protein compare
LRK54_RS03700 +0.4 1.3 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK54_RS16575 +0.4 4.0 GGDEF domain-containing phosphodiesterase compare
LRK54_RS14580 +0.4 0.5 hypothetical protein compare
LRK54_RS13475 +0.4 1.1 flagellar protein FliT compare
LRK54_RS14475 +0.4 3.5 sensor histidine kinase compare
LRK54_RS17660 +0.4 1.3 hypothetical protein compare
LRK54_RS01720 +0.4 0.6 hydroxyacid dehydrogenase compare
LRK54_RS03075 +0.4 2.4 acyltransferase compare
LRK54_RS14985 +0.4 1.8 recombination regulator RecX compare
LRK54_RS13425 +0.4 1.0 flagellar basal-body rod protein FlgF compare
LRK54_RS17730 +0.4 1.6 4Fe-4S binding protein compare
LRK54_RS14785 +0.4 1.7 NADH:flavin oxidoreductase/NADH oxidase compare
LRK54_RS17435 +0.4 1.3 nucleoside diphosphate kinase regulator compare
LRK54_RS15365 +0.4 0.9 hypothetical protein compare
LRK54_RS13980 +0.4 1.8 molybdenum cofactor guanylyltransferase compare
LRK54_RS14950 +0.4 2.2 DUF4852 domain-containing protein compare
LRK54_RS15695 +0.4 1.5 hypothetical protein compare
LRK54_RS00405 +0.4 2.0 FHA domain-containing protein compare
LRK54_RS13415 +0.4 2.1 flagellar hook capping protein compare
LRK54_RS08385 +0.4 1.2 GntR family transcriptional regulator compare
LRK54_RS10280 +0.4 2.1 PspC domain-containing protein compare
LRK54_RS11980 +0.4 2.5 DUF559 domain-containing protein compare
LRK54_RS17135 +0.4 0.5 hypothetical protein compare
LRK54_RS09180 +0.4 3.4 phosphomannomutase/phosphoglucomutase compare
LRK54_RS15430 +0.4 1.9 lipocalin-like domain-containing protein compare
LRK54_RS13105 +0.4 1.3 FHA domain-containing protein compare
LRK54_RS07290 +0.4 0.6 VanZ family protein compare
LRK54_RS08380 +0.4 1.9 type II toxin-antitoxin system HipA family toxin YjjJ compare
LRK54_RS00885 +0.3 1.3 class II fumarate hydratase compare
LRK54_RS17590 +0.3 2.0 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS15080 +0.3 1.6 glycine cleavage system protein R compare
LRK54_RS17905 +0.3 0.8 NfuA family Fe-S biogenesis protein compare
LRK54_RS13405 +0.3 1.1 flagellar basal body rod protein FlgB compare
LRK54_RS13585 +0.3 1.2 chemotaxis response regulator CheY compare
LRK54_RS00490 +0.3 0.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS10195 +0.3 0.7 hypothetical protein compare
LRK54_RS13505 +0.3 1.5 flagellar assembly protein FliH compare
LRK54_RS13025 +0.3 1.4 hypothetical protein compare
LRK54_RS00750 +0.3 1.0 response regulator transcription factor compare
LRK54_RS11850 +0.3 2.7 pilus assembly protein PilP compare
LRK54_RS15540 +0.3 1.2 helix-turn-helix transcriptional regulator compare
LRK54_RS01890 +0.3 1.9 hypothetical protein compare
LRK54_RS01925 +0.3 1.5 TolC family protein compare
LRK54_RS01885 +0.3 2.0 peptidylprolyl isomerase compare
LRK54_RS06355 +0.3 2.2 hypothetical protein compare
LRK54_RS02020 +0.3 1.0 DUF2058 domain-containing protein compare
LRK54_RS10145 +0.3 2.0 DNA-processing protein DprA compare
LRK54_RS18110 +0.3 2.1 2OG-Fe(II) oxygenase compare
LRK54_RS15870 +0.3 1.7 Ig-like domain-containing protein compare
LRK54_RS13680 +0.3 1.5 STAS domain-containing protein compare
LRK54_RS07985 +0.3 1.0 ATP-binding protein compare
LRK54_RS07495 +0.3 1.3 hypothetical protein compare
LRK54_RS07025 +0.3 2.1 pseudouridine synthase compare
LRK54_RS13650 +0.3 1.5 chemotaxis protein CheW compare
LRK54_RS15360 +0.3 1.2 arginase family protein compare
LRK54_RS09360 +0.3 0.8 RNA polymerase sigma factor compare
LRK54_RS09105 +0.3 0.7 energy transducer TonB compare
LRK54_RS17830 +0.3 0.4 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS04820 +0.3 0.6 GspH/FimT family pseudopilin compare
LRK54_RS16135 +0.3 1.4 TatD family hydrolase compare
LRK54_RS17325 +0.3 2.0 hypothetical protein compare
LRK54_RS06960 +0.3 0.9 hypothetical protein compare
LRK54_RS06115 +0.3 1.2 hypothetical protein compare
LRK54_RS07940 +0.3 2.2 histidine kinase compare
LRK54_RS17055 +0.3 1.4 DoxX family protein compare
LRK54_RS03945 +0.3 2.5 type IV-A pilus assembly ATPase PilB compare
LRK54_RS10085 +0.3 2.3 CDP-glycerol glycerophosphotransferase family protein compare
LRK54_RS10620 +0.3 0.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS01980 +0.3 1.7 c-type cytochrome compare
LRK54_RS06440 +0.3 1.4 HAD family hydrolase compare
LRK54_RS12330 +0.3 0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK54_RS13380 +0.3 1.4 flagellar protein FlgN compare
LRK54_RS04195 +0.3 1.7 twitching motility response regulator PilG compare
LRK54_RS01135 +0.3 2.2 PilZ domain-containing protein compare
LRK54_RS06045 +0.3 1.7 hypothetical protein compare
LRK54_RS01930 +0.3 0.8 hypothetical protein compare
LRK54_RS09300 +0.3 1.7 NAD(+) diphosphatase compare
LRK54_RS11840 +0.3 2.2 PilN domain-containing protein compare
LRK54_RS01995 +0.3 1.1 hypothetical protein compare
LRK54_RS05795 +0.3 2.2 azurin compare
LRK54_RS08000 +0.3 1.5 DsbA family protein compare
LRK54_RS04655 +0.3 1.1 peptide deformylase compare
LRK54_RS13230 +0.3 1.3 glycosyltransferase compare
LRK54_RS16350 +0.3 0.5 helix-turn-helix domain-containing protein compare
LRK54_RS00735 +0.3 1.8 YidB family protein compare
LRK54_RS15055 +0.3 1.9 carboxymuconolactone decarboxylase family protein compare
LRK54_RS08230 +0.3 1.2 hypothetical protein compare
LRK54_RS13555 +0.2 1.1 flagellar biosynthetic protein FliR compare
LRK54_RS11845 +0.2 2.2 type 4a pilus biogenesis protein PilO compare
LRK54_RS06185 +0.2 1.4 CPXCG motif-containing cysteine-rich protein compare
LRK54_RS11900 +0.2 1.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS05105 +0.2 1.4 class I SAM-dependent methyltransferase compare
LRK54_RS07945 +0.2 1.9 LytTR family DNA-binding domain-containing protein compare
LRK54_RS05350 +0.2 0.7 manganese efflux pump MntP family protein compare
LRK54_RS07645 +0.2 1.5 alpha/beta hydrolase compare
LRK54_RS14745 +0.2 1.2 peptidylprolyl isomerase compare
LRK54_RS10955 +0.2 1.9 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS07990 +0.2 1.0 conjugal transfer protein TraR compare
LRK54_RS05425 +0.2 1.5 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS15560 +0.2 1.8 DUF899 family protein compare
LRK54_RS13665 +0.2 1.3 chemoreceptor glutamine deamidase CheD compare
LRK54_RS13510 +0.2 1.5 flagellar protein export ATPase FliI compare
LRK54_RS08265 +0.2 1.6 AAA family ATPase compare
LRK54_RS14370 +0.2 0.7 Lrp/AsnC family transcriptional regulator compare
LRK54_RS09480 +0.2 1.2 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK54_RS08865 +0.2 1.7 hypothetical protein compare
LRK54_RS02030 +0.2 1.4 MmcQ/YjbR family DNA-binding protein compare
LRK54_RS16245 +0.2 1.1 ABC transporter ATP-binding protein compare
LRK54_RS05335 +0.2 1.5 shikimate kinase compare
LRK54_RS02815 +0.2 0.3 hypothetical protein compare
LRK54_RS09790 +0.2 1.9 hypothetical protein compare
LRK54_RS12915 +0.2 1.0 hypothetical protein compare
LRK54_RS11305 +0.2 1.1 hypothetical protein compare
LRK54_RS05520 +0.2 1.9 sulfate adenylyltransferase subunit CysD compare
LRK54_RS11545 +0.2 0.8 DUF4194 domain-containing protein compare
LRK54_RS15590 +0.2 1.3 hypothetical protein compare
LRK54_RS02210 +0.2 1.3 type IV pilus modification protein PilV compare
LRK54_RS07900 +0.2 1.3 GTP cyclohydrolase I compare
LRK54_RS13530 +0.2 1.2 flagellar motor switch protein FliM compare
LRK54_RS06790 +0.2 1.7 TlpA family protein disulfide reductase compare
LRK54_RS05515 +0.2 2.1 adenylyl-sulfate kinase compare
LRK54_RS13620 +0.2 0.4 hypothetical protein compare
LRK54_RS11000 +0.2 0.9 HutD family protein compare
LRK54_RS12580 +0.2 0.8 hypothetical protein compare
LRK54_RS16480 +0.2 1.2 NAD-dependent protein deacetylase compare
LRK54_RS06180 +0.2 1.6 bifunctional nicotinamidase/pyrazinamidase compare
LRK54_RS04715 +0.2 1.0 hypothetical protein compare
LRK54_RS12425 +0.2 1.5 HNH endonuclease compare
LRK54_RS02550 +0.2 0.5 iron-sulfur cluster assembly accessory protein compare
LRK54_RS10870 +0.2 1.2 hypothetical protein compare
LRK54_RS12065 +0.2 1.5 MurR/RpiR family transcriptional regulator compare
LRK54_RS13350 +0.2 1.1 hypothetical protein compare
LRK54_RS08635 +0.2 1.1 DUF4336 domain-containing protein compare
LRK54_RS14540 +0.2 1.8 SPFH domain-containing protein compare
LRK54_RS00850 +0.2 1.5 SDR family oxidoreductase compare
LRK54_RS02490 +0.2 1.8 EAL domain-containing protein compare
LRK54_RS11700 +0.2 0.7 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS09185 +0.2 1.8 DUF4124 domain-containing protein compare
LRK54_RS05695 +0.2 0.9 host attachment protein compare
LRK54_RS01585 +0.2 1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS01895 +0.2 1.7 AsmA family protein compare
LRK54_RS13560 +0.2 1.8 flagellar biosynthesis protein FlhB compare
LRK54_RS00120 +0.2 1.3 glyoxalase/bleomycin resistance/dioxygenase family protein compare
LRK54_RS04740 +0.2 1.3 RDD family protein compare
LRK54_RS17550 +0.2 0.9 P-II family nitrogen regulator compare
LRK54_RS07675 +0.2 0.8 CPBP family intramembrane metalloprotease compare
LRK54_RS05330 +0.2 1.2 aminopeptidase P family protein compare
LRK54_RS16410 +0.2 1.5 hypothetical protein compare
LRK54_RS08985 +0.2 1.6 IS5 family transposase compare
LRK54_RS11855 +0.2 1.8 type IV pilus secretin PilQ compare
LRK54_RS00685 +0.2 1.4 hypothetical protein compare
LRK54_RS04475 +0.2 1.6 helix-turn-helix domain-containing protein compare
LRK54_RS15285 +0.2 1.8 Glu/Leu/Phe/Val dehydrogenase compare
LRK54_RS11750 +0.2 0.9 YicC family protein compare
LRK54_RS07185 +0.2 1.2 hypothetical protein compare
LRK54_RS01660 +0.2 0.9 DUF4399 domain-containing protein compare
LRK54_RS02190 +0.2 1.8 type IV pilin protein compare
LRK54_RS13565 +0.2 1.6 flagellar biosynthesis protein FlhA compare
LRK54_RS14880 +0.2 1.3 hypothetical protein compare
LRK54_RS15745 +0.2 1.5 lipocalin family protein compare
LRK54_RS04015 +0.2 1.5 TPM domain-containing protein compare
LRK54_RS03850 +0.2 1.5 NAD(P) transhydrogenase subunit alpha compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in no stress control experiments