Experiment set13S51 for Phocaeicola vulgatus CL09T03C04

Compare to:

Beta-Lactose 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS07285 +3.4 23.6 ROK family transcriptional regulator compare
HMPREF1058_RS03510 +3.2 17.4 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS03130 +2.8 4.8 DUF177 domain-containing protein compare
HMPREF1058_RS14220 +2.8 9.1 energy transducer TonB compare
HMPREF1058_RS13735 +2.6 11.9 hypothetical protein compare
HMPREF1058_RS18775 +2.5 17.9 S9 family peptidase compare
HMPREF1058_RS10765 +2.4 13.4 ribonuclease III compare
HMPREF1058_RS04350 +2.3 13.6 C1 family peptidase compare
HMPREF1058_RS14130 +2.3 9.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS07385 +2.3 8.0 family 20 glycosylhydrolase compare
HMPREF1058_RS11825 +2.1 9.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07390 +2.1 5.0 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS06410 +2.0 8.1 elongation factor 4 compare
HMPREF1058_RS10500 +1.9 10.2 HU family DNA-binding protein compare
HMPREF1058_RS02385 +1.9 7.5 FecR family protein compare
HMPREF1058_RS03770 +1.8 9.4 RNA polymerase sigma factor compare
HMPREF1058_RS04370 +1.8 9.9 agmatine deiminase family protein compare
HMPREF1058_RS08535 +1.8 4.5 elongation factor P compare
HMPREF1058_RS03135 +1.8 2.5 5S ribosomal RNA compare
HMPREF1058_RS03215 +1.7 11.6 AhpC/TSA family protein compare
HMPREF1058_RS15310 +1.7 5.8 Mfa1 family fimbria major subunit compare
HMPREF1058_RS15740 +1.6 3.7 hypothetical protein compare
HMPREF1058_RS15330 +1.5 3.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS17565 +1.5 2.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS11880 +1.5 12.6 hypothetical protein compare
HMPREF1058_RS02155 +1.5 8.4 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS17765 +1.4 5.6 Do family serine endopeptidase compare
HMPREF1058_RS15320 +1.4 4.2 hypothetical protein compare
HMPREF1058_RS07415 +1.4 6.3 family 20 glycosylhydrolase compare
HMPREF1058_RS20480 +1.3 5.0 site-specific integrase compare
HMPREF1058_RS07075 +1.3 6.0 SPOR domain-containing protein compare
HMPREF1058_RS09990 +1.3 8.9 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS03430 +1.3 2.5 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS07245 +1.3 4.0 Rne/Rng family ribonuclease compare
HMPREF1058_RS16765 +1.3 7.1 PhoH family protein compare
HMPREF1058_RS11490 +1.2 4.6 redox-regulated ATPase YchF compare
HMPREF1058_RS05300 +1.2 2.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03090 +1.2 6.4 trigger factor compare
HMPREF1058_RS07425 +1.2 5.8 SusD family outer membrane lipoprotein NanU compare
HMPREF1058_RS10495 +1.2 1.9 rhomboid family intramembrane serine protease compare
HMPREF1058_RS02150 +1.2 8.1 DUF3440 domain-containing protein compare
HMPREF1058_RS13060 +1.2 3.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18770 +1.2 1.4 hypothetical protein compare
HMPREF1058_RS10055 +1.2 9.0 translational GTPase TypA compare
HMPREF1058_RS04675 +1.2 7.9 amidophosphoribosyltransferase compare
HMPREF1058_RS06740 +1.1 6.8 glycosyltransferase compare
HMPREF1058_RS11910 +1.1 6.8 DEAD/DEAH box helicase compare
HMPREF1058_RS14300 +1.1 5.6 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS05935 +1.1 7.0 bifunctional nuclease family protein compare
HMPREF1058_RS14945 +1.1 8.9 hypothetical protein compare
HMPREF1058_RS07410 +1.1 2.2 sialate O-acetylesterase compare
HMPREF1058_RS14065 +1.1 6.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS06735 +1.0 4.5 ABC transporter permease compare
HMPREF1058_RS11790 +1.0 6.8 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS14940 +1.0 6.4 OmpA family protein compare
HMPREF1058_RS05790 +1.0 1.8 hypothetical protein compare
HMPREF1058_RS06055 +1.0 5.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS14160 +1.0 1.5 hypothetical protein compare
HMPREF1058_RS12880 +1.0 6.1 thiamine-phosphate kinase compare
HMPREF1058_RS07635 +0.9 2.6 50S ribosomal protein L9 compare
HMPREF1058_RS06425 +0.9 1.7 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS06730 +0.9 5.2 ABC transporter ATP-binding protein compare
HMPREF1058_RS11830 +0.9 7.9 hypothetical protein compare
HMPREF1058_RS01905 +0.9 1.7 hypothetical protein compare
HMPREF1058_RS06710 +0.9 5.4 DUF4422 domain-containing protein compare
HMPREF1058_RS07405 +0.9 2.3 sialate O-acetylesterase compare
HMPREF1058_RS19140 +0.9 1.9 hypothetical protein compare
HMPREF1058_RS15325 +0.9 6.0 BACON domain-containing protein compare
HMPREF1058_RS13065 +0.9 5.0 hypothetical protein compare
HMPREF1058_RS02145 +0.9 3.2 hypothetical protein compare
HMPREF1058_RS06430 +0.9 2.3 C-GCAxxG-C-C family protein compare
HMPREF1058_RS16525 +0.9 2.3 hypothetical protein compare
HMPREF1058_RS01240 +0.9 5.9 DEAD/DEAH box helicase compare
HMPREF1058_RS05520 +0.9 0.8 DUF4357 domain-containing protein compare
HMPREF1058_RS12560 +0.9 6.1 redoxin domain-containing protein compare
HMPREF1058_RS07695 +0.9 3.9 DUF4827 domain-containing protein compare
HMPREF1058_RS02910 +0.9 7.1 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS02375 +0.9 5.0 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS13940 +0.9 5.7 hypothetical protein compare
HMPREF1058_RS07920 +0.9 3.4 DUF108 domain-containing protein compare
HMPREF1058_RS07395 +0.8 3.8 family 20 glycosylhydrolase compare
HMPREF1058_RS03950 +0.8 2.0 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS07295 +0.8 3.6 AGE family epimerase/isomerase compare
HMPREF1058_RS01845 +0.8 2.0 site-specific integrase compare
HMPREF1058_RS00710 +0.8 3.9 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS02015 +0.8 3.5 ASCH domain-containing protein compare
HMPREF1058_RS03630 +0.8 2.4 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS05415 +0.8 1.3 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS06720 +0.8 3.8 glycosyltransferase compare
HMPREF1058_RS14950 +0.8 3.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10010 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS16490 +0.8 5.1 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS02020 +0.8 1.0 hypothetical protein compare
HMPREF1058_RS07095 +0.8 6.3 PD40 domain-containing protein compare
HMPREF1058_RS21185 +0.8 1.9 hypothetical protein compare
HMPREF1058_RS03050 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS05930 +0.8 3.6 MFS transporter compare
HMPREF1058_RS14440 +0.8 3.0 FecR domain-containing protein compare
HMPREF1058_RS11470 +0.8 6.2 porin family protein compare
HMPREF1058_RS04600 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS06760 +0.8 3.5 glycosyltransferase family 4 protein compare
HMPREF1058_RS12825 +0.8 3.6 alkaline phosphatase compare
HMPREF1058_RS06725 +0.7 4.6 glycosyl transferase compare
HMPREF1058_RS14035 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS18575 +0.7 3.2 YqgE/AlgH family protein compare
HMPREF1058_RS09110 +0.7 2.9 RNA polymerase sigma-70 factor compare
HMPREF1058_RS04430 +0.7 3.6 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS18370 +0.7 2.4 methionine synthase compare
HMPREF1058_RS18455 +0.7 3.2 hypothetical protein compare
HMPREF1058_RS03275 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS17610 +0.7 2.5 DUF47 domain-containing protein compare
HMPREF1058_RS14710 +0.7 2.5 DUF1847 domain-containing protein compare
HMPREF1058_RS17185 +0.7 3.2 manganese efflux pump compare
HMPREF1058_RS14195 +0.7 4.1 DUF1573 domain-containing protein compare
HMPREF1058_RS13085 +0.7 2.9 HU family DNA-binding protein compare
HMPREF1058_RS01425 +0.7 3.8 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS09790 +0.7 2.1 type IA DNA topoisomerase compare
HMPREF1058_RS02130 +0.7 5.2 hypothetical protein compare
HMPREF1058_RS05550 +0.7 1.7 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1058_RS05695 +0.7 1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07400 +0.7 2.8 glycoside hydrolase family 2 protein compare
HMPREF1058_RS02990 +0.7 3.1 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS10875 +0.7 5.1 glycosyltransferase compare
HMPREF1058_RS02875 +0.7 3.1 cysteine synthase A compare
HMPREF1058_RS15315 +0.7 1.6 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS18340 +0.7 2.8 hypothetical protein compare
HMPREF1058_RS14050 +0.7 3.8 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS00525 +0.7 2.1 DUF4290 domain-containing protein compare
HMPREF1058_RS02700 +0.7 1.7 glycerol kinase GlpK compare
HMPREF1058_RS03675 +0.7 2.8 hypothetical protein compare
HMPREF1058_RS10640 +0.7 3.9 outer membrane lipoprotein carrier protein LolA compare
HMPREF1058_RS16895 +0.7 2.8 hypothetical protein compare
HMPREF1058_RS04230 +0.7 2.2 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1058_RS14020 +0.7 4.6 cardiolipin synthase compare
HMPREF1058_RS03095 +0.6 1.6 RNA-binding protein compare
HMPREF1058_RS17930 +0.6 3.5 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS15910 +0.6 2.1 thioredoxin compare
HMPREF1058_RS05455 +0.6 3.0 alpha/beta fold hydrolase compare
HMPREF1058_RS04010 +0.6 4.2 molecular chaperone HtpG compare
HMPREF1058_RS17980 +0.6 2.7 hypothetical protein compare
HMPREF1058_RS04995 +0.6 4.0 putative sulfate exporter family transporter compare
HMPREF1058_RS08940 +0.6 1.7 RNA polymerase sigma-70 factor compare
HMPREF1058_RS07835 +0.6 1.9 DUF1573 domain-containing protein compare
HMPREF1058_RS12990 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS06035 +0.6 2.3 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS05255 +0.6 2.5 hypothetical protein compare
HMPREF1058_RS07320 +0.6 2.7 AraC family transcriptional regulator compare
HMPREF1058_RS02665 +0.6 2.2 type I-C CRISPR-associated protein Cas5 compare
HMPREF1058_RS04015 +0.6 3.1 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS11840 +0.6 5.4 hypothetical protein compare
HMPREF1058_RS13330 +0.6 2.5 NADH-quinone oxidoreductase subunit B compare
HMPREF1058_RS10940 +0.6 4.4 U32 family peptidase compare
HMPREF1058_RS08635 +0.6 1.8 rhodanese-like domain-containing protein compare
HMPREF1058_RS01995 +0.6 0.9 hypothetical protein compare
HMPREF1058_RS08385 +0.6 4.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS08580 +0.6 3.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS04160 +0.6 1.5 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS06255 +0.6 3.3 hypothetical protein compare
HMPREF1058_RS18940 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS02995 +0.6 1.7 peptidylprolyl isomerase compare
HMPREF1058_RS09665 +0.6 3.2 class I SAM-dependent methyltransferase compare
HMPREF1058_RS15000 +0.6 2.8 hypothetical protein compare
HMPREF1058_RS03455 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS03175 +0.6 1.6 DUF2764 domain-containing protein compare
HMPREF1058_RS05940 +0.6 2.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS03505 +0.6 2.3 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS21715 +0.6 2.3 hypothetical protein compare
HMPREF1058_RS09440 +0.6 1.4 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS06510 +0.6 3.1 ornithine cyclodeaminase compare
HMPREF1058_RS18750 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS12290 +0.6 3.4 DUF3109 family protein compare
HMPREF1058_RS06625 +0.6 2.3 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS06660 +0.6 2.8 NUDIX hydrolase compare
HMPREF1058_RS10885 +0.6 4.0 glycosyltransferase compare
HMPREF1058_RS15205 +0.6 2.7 aminodeoxychorismate synthase component I compare
HMPREF1058_RS10395 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS21575 +0.6 1.1 mobilization protein compare
HMPREF1058_RS13335 +0.6 1.9 NADH-quinone oxidoreductase subunit A compare
HMPREF1058_RS11485 +0.6 2.9 ketopantoate reductase family protein compare
HMPREF1058_RS13090 +0.6 1.9 UpxY family transcription antiterminator compare
HMPREF1058_RS05560 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS13640 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS04715 +0.5 1.5 PUR family DNA/RNA-binding protein compare
HMPREF1058_RS00470 +0.5 3.0 redox-sensing transcriptional repressor Rex compare
HMPREF1058_RS02530 +0.5 2.3 GxxExxY protein compare
HMPREF1058_RS00440 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS16515 +0.5 2.4 GNAT family N-acetyltransferase compare
HMPREF1058_RS04025 +0.5 3.0 hypothetical protein compare
HMPREF1058_RS04525 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS15375 +0.5 0.7 DUF4369 domain-containing protein compare
HMPREF1058_RS11280 +0.5 3.3 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
HMPREF1058_RS17840 +0.5 3.4 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS18405 +0.5 3.2 hypothetical protein compare
HMPREF1058_RS17365 +0.5 1.2 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS13415 +0.5 1.4 FecR family protein compare
HMPREF1058_RS10650 +0.5 2.5 hypothetical protein compare
HMPREF1058_RS0119340 +0.5 1.2 IS1182 family transposase compare
HMPREF1058_RS09920 +0.5 1.8 conjugative transposon protein TraN compare
HMPREF1058_RS04940 +0.5 1.6 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS09240 +0.5 2.9 type I methionyl aminopeptidase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Beta-Lactose in Phocaeicola vulgatus CL09T03C04

For carbon source Beta-Lactose across organisms