Experiment set13S507 for Cupriavidus basilensis FW507-4G11

Compare to:

Pseudomonas_EB271-B4-1_fractionated_DNA carbon source; Aerobic

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.7 -6.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS19005 -6.3 -6.1 3-dehydroquinate synthase compare
RR42_RS01385 -6.2 -4.3 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14390 -5.9 -4.0 3-isopropylmalate dehydratase compare
RR42_RS01845 -5.5 -3.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS12175 -5.2 -12.1 malate synthase compare
RR42_RS07425 -5.1 -9.1 IclR family transcriptional regulator compare
RR42_RS14320 -4.9 -6.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS18305 -4.7 -3.8 anthranilate phosphoribosyltransferase compare
RR42_RS16250 -4.3 -7.3 sulfate adenylyltransferase compare
RR42_RS14400 -4.3 -6.3 isopropylmalate isomerase compare
RR42_RS14385 -4.2 -6.4 3-isopropylmalate dehydrogenase compare
RR42_RS18300 -4.2 -4.8 anthranilate synthase subunit II compare
RR42_RS16245 -4.2 -6.4 uroporphyrin-III methyltransferase compare
RR42_RS18295 -4.2 -10.9 anthranilate synthase component I compare
RR42_RS13880 -4.1 -14.2 AMP-dependent synthetase compare
RR42_RS06485 -3.9 -8.7 chorismate synthase compare
RR42_RS01160 -3.9 -9.2 homoserine O-acetyltransferase compare
RR42_RS05955 -3.9 -1.6 hypothetical protein compare
RR42_RS00875 -3.9 -13.7 isocitrate dehydrogenase compare
RR42_RS16275 -3.9 -3.4 membrane protein compare
RR42_RS16255 -3.8 -6.5 sulfate adenylyltransferase compare
RR42_RS05860 -3.8 -5.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16270 -3.6 -9.1 sulfite reductase compare
RR42_RS02085 -3.5 -8.2 RNA polymerase subunit sigma-54 compare
RR42_RS34255 -3.5 -6.4 aldehyde dehydrogenase compare
RR42_RS12040 -3.5 -8.7 MFS transporter compare
RR42_RS04700 -3.5 -2.0 ribonuclease G compare
RR42_RS04475 -3.4 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS24510 -3.4 -2.0 hypothetical protein compare
RR42_RS18990 -3.2 -15.1 glutamate synthase compare
RR42_RS16240 -3.0 -1.7 cobalamin biosynthesis protein CbiX compare
RR42_RS12545 -2.9 -9.5 aminotransferase compare
RR42_RS01290 -2.9 -4.7 thiamine biosynthesis protein ThiC compare
RR42_RS04460 -2.8 -5.3 chorismate mutase compare
RR42_RS34815 -2.7 -5.4 diguanylate cyclase compare
RR42_RS18310 -2.7 -2.3 indole-3-glycerol-phosphate synthase compare
RR42_RS02150 -2.7 -2.9 membrane protein compare
RR42_RS03075 -2.6 -8.7 transcriptional regulator compare
RR42_RS17940 -2.6 -2.7 gamma-glutamyl kinase compare
RR42_RS03080 -2.6 -3.1 recombinase RecA compare
RR42_RS14365 -2.6 -1.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS12590 -2.5 -1.5 50S ribosomal protein L9 compare
RR42_RS03070 -2.5 -9.1 histidine kinase compare
RR42_RS04535 -2.4 -4.5 cysteine synthase compare
RR42_RS16280 -2.4 -5.6 transcriptional regulator compare
RR42_RS32740 -2.4 -1.4 enoyl-CoA hydratase compare
RR42_RS23355 -2.3 -2.6 flagellar biosynthetic protein FliQ compare
RR42_RS11790 -2.2 -7.8 phosphoenolpyruvate synthase compare
RR42_RS14360 -2.2 -1.3 tryptophan synthase subunit alpha compare
RR42_RS03095 -2.2 -2.1 succinyl-CoA synthetase subunit beta compare
RR42_RS05465 -2.2 -8.5 2-isopropylmalate synthase compare
RR42_RS17505 -2.1 -7.5 NAD synthetase compare
RR42_RS20205 -2.1 -2.0 chromosome partitioning protein compare
RR42_RS09015 -2.1 -3.4 trigger factor compare
RR42_RS11655 -2.1 -2.4 heat-shock protein Hsp20 compare
RR42_RS21470 -2.0 -1.1 hypothetical protein compare
RR42_RS15050 -2.0 -5.8 DNA polymerase I compare
RR42_RS04470 -2.0 -4.9 prephenate dehydrogenase compare
RR42_RS17490 -2.0 -5.8 NADP transhydrogenase subunit alpha compare
RR42_RS04545 -2.0 -9.4 deacetylase compare
RR42_RS18985 -1.9 -4.4 glutamate synthase compare
RR42_RS07605 -1.9 -3.7 poly-beta-hydroxybutyrate polymerase compare
RR42_RS17390 -1.9 -4.6 ATP-dependent DNA helicase RecG compare
RR42_RS16260 -1.9 -1.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS24575 -1.8 -2.5 endoribonuclease L-PSP compare
RR42_RS29610 -1.8 -2.2 cytochrome C2 compare
RR42_RS07365 -1.7 -2.4 pyruvate dehydrogenase compare
RR42_RS01210 -1.7 -4.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS01780 -1.6 -4.5 glutathione synthetase compare
RR42_RS29865 -1.6 -1.8 hypothetical protein compare
RR42_RS17645 -1.6 -4.1 shikimate dehydrogenase compare
RR42_RS24605 -1.6 -8.8 TetR family transcriptional regulator compare
RR42_RS26370 -1.6 -2.1 tautomerase compare
RR42_RS08575 -1.5 -1.1 tail protein compare
RR42_RS01435 -1.5 -2.5 short-chain dehydrogenase compare
RR42_RS04735 -1.5 -1.6 hypothetical protein compare
RR42_RS06630 -1.5 -1.7 integration host factor subunit alpha compare
RR42_RS18425 -1.4 -1.2 hypothetical protein compare
RR42_RS11795 -1.4 -3.0 PEP synthetase regulatory protein compare
RR42_RS01775 -1.4 -4.0 glutamate--cysteine ligase compare
RR42_RS01380 -1.4 -1.5 membrane protein compare
RR42_RS01505 -1.4 -1.4 tRNA-Cys compare
RR42_RS03065 -1.4 -3.9 membrane protein compare
RR42_RS27550 -1.4 -1.3 hypothetical protein compare
RR42_RS02500 -1.4 -1.8 TetR family transcriptional regulator compare
RR42_RS31285 -1.4 -1.5 XRE family transcriptional regulator compare
RR42_RS12180 -1.3 -2.5 haloacid dehalogenase compare
RR42_RS05990 -1.3 -5.1 aromatic amino acid aminotransferase compare
RR42_RS33815 -1.3 -1.1 isochorismatase compare
RR42_RS26455 -1.3 -1.3 amino acid ABC transporter ATP-binding protein compare
RR42_RS07620 -1.3 -4.1 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS05485 -1.3 -2.3 polynucleotide phosphorylase/polyadenylase compare
RR42_RS03940 -1.3 -1.4 membrane protein compare
RR42_RS31685 -1.3 -3.2 Asp/Glu/hydantoin racemase compare
RR42_RS17560 -1.3 -6.1 Fur family transcriptional regulator compare
RR42_RS08590 -1.2 -1.4 baseplate assembly protein compare
RR42_RS14985 -1.2 -1.4 30S ribosomal protein S21 compare
RR42_RS33350 -1.2 -1.5 hypothetical protein compare
RR42_RS20570 -1.2 -1.2 biopolymer transporter ExbD compare
RR42_RS13365 -1.2 -1.3 peptidase P60 compare
RR42_RS35965 -1.2 -2.2 hypothetical protein compare
RR42_RS06020 -1.2 -1.1 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS31290 -1.2 -1.5 XRE family transcriptional regulator compare
RR42_RS06250 -1.2 -1.7 dihydrodipicolinate synthase compare
RR42_RS14735 -1.2 -2.7 membrane protein compare
RR42_RS02705 -1.2 -1.6 Holliday junction DNA helicase RuvA compare
RR42_RS18270 -1.2 -2.1 murein transglycosylase compare
RR42_RS34535 -1.2 -1.4 membrane protein compare
RR42_RS05115 -1.1 -1.8 LysR family transcriptional regulator compare
RR42_RS28290 -1.1 -2.5 DNA-binding protein compare
RR42_RS02065 -1.1 -1.1 phosphate starvation-inducible protein PsiF compare
RR42_RS19090 -1.1 -1.1 cytochrome C compare
RR42_RS01165 -1.1 -2.8 methionine biosynthesis protein MetW compare
RR42_RS09310 -1.1 -1.8 IclR family transcriptional regulator compare
RR42_RS18020 -1.1 -1.9 ornithine acetyltransferase compare
RR42_RS15090 -1.1 -2.7 DNA helicase compare
RR42_RS05755 -1.1 -1.3 enoyl-CoA hydratase compare
RR42_RS17375 -1.1 -1.1 hypothetical protein compare
RR42_RS03020 -1.1 -1.1 MarR family transcriptional regulator compare
RR42_RS31205 -1.1 -2.2 phospho-N-acetylmuramoyl-pentapeptide transferase compare
RR42_RS06240 -1.1 -1.2 tryptophan--tRNA ligase compare
RR42_RS02750 -1.1 -5.2 mannose-1-phosphate guanylyltransferase compare
RR42_RS12185 -1.0 -1.3 LysR family transcriptional regulator compare
RR42_RS21720 -1.0 -1.6 acetoin catabolism protein X compare
RR42_RS07325 -1.0 -3.8 exodeoxyribonuclease III compare
RR42_RS13450 -1.0 -2.2 PhoU family transcriptional regulator compare
RR42_RS13875 -1.0 -6.6 sodium:solute symporter compare
RR42_RS11090 -1.0 -2.6 nicotinamidase compare
RR42_RS17050 -1.0 -3.9 phosphoribosylglycinamide formyltransferase compare
RR42_RS21455 -1.0 -1.3 transposase compare
RR42_RS19445 -1.0 -4.3 TetR family transcriptional regulator compare
RR42_RS26475 -1.0 -2.8 Asp/Glu racemase compare
RR42_RS12870 -1.0 -2.1 membrane protein compare
RR42_RS34270 -1.0 -4.5 Fis family transcriptional regulator compare
RR42_RS34260 -1.0 -3.5 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS01260 -1.0 -2.9 lauroyl acyltransferase compare
RR42_RS24760 -1.0 -1.0 hypothetical protein compare
RR42_RS05920 -1.0 -2.0 HrcA family transcriptional regulator compare
RR42_RS07150 -1.0 -1.0 hypothetical protein compare
RR42_RS08330 -1.0 -1.0 hypothetical protein compare
RR42_RS08260 -1.0 -1.4 hypothetical protein compare
RR42_RS13530 -1.0 -2.4 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS00775 -1.0 -5.5 methionine synthase compare
RR42_RS16620 -0.9 -1.4 hypothetical protein compare
RR42_RS01255 -0.9 -3.9 lauroyl acyltransferase compare
RR42_RS22180 -0.9 -1.8 hypothetical protein compare
RR42_RS20295 -0.9 -1.8 alpha/beta hydrolase compare
RR42_RS07870 -0.9 -2.0 alkyl hydroperoxide reductase compare
RR42_RS15225 -0.9 -1.0 RNA-binding protein compare
RR42_RS14810 -0.9 -3.2 DEAD/DEAH box helicase compare
RR42_RS34905 -0.9 -1.5 enoyl-CoA hydratase compare
RR42_RS17510 -0.9 -4.1 chemotaxis protein CheY compare
RR42_RS07255 -0.9 -1.2 hypothetical protein compare
RR42_RS12155 -0.9 -1.9 molecular chaperone compare
RR42_RS31775 -0.9 -2.4 HxlR family transcriptional regulator compare
RR42_RS06875 -0.9 -1.6 hypothetical protein compare
RR42_RS19440 -0.9 -1.7 DNA repair protein compare
RR42_RS17235 -0.9 -3.3 poly(A) polymerase compare
RR42_RS11755 -0.9 -6.3 multidrug DMT transporter permease compare
RR42_RS11520 -0.8 -1.9 ABC transporter ATP-binding protein compare
RR42_RS14885 -0.8 -1.3 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS31055 -0.8 -1.1 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS06355 -0.8 -2.2 Fe-S cluster assembly protein HesB compare
RR42_RS21625 -0.8 -3.3 6-hydroxynicotinate 3-monooxygenase compare
RR42_RS27090 -0.8 -1.2 chemotaxis protein CheV compare
RR42_RS20925 -0.8 -2.0 Crp/Fnr family transcriptional regulator compare
RR42_RS13720 -0.8 -2.8 oxidoreductase compare
RR42_RS08005 -0.8 -2.4 hypothetical protein compare
RR42_RS02380 -0.8 -3.0 FAD-linked oxidase compare
RR42_RS28000 -0.8 -1.1 hypothetical protein compare
RR42_RS15455 -0.8 -2.5 membrane protein compare
RR42_RS28920 -0.8 -1.3 hypothetical protein compare
RR42_RS18825 -0.8 -1.8 ubiquinol-cytochrome C reductase compare
RR42_RS15055 -0.8 -3.2 hypothetical protein compare
RR42_RS27735 -0.8 -4.6 GntR family transcriptional regulator compare
RR42_RS17095 -0.8 -4.3 bleomycin resistance protein compare
RR42_RS34450 -0.8 -2.6 glycosyl transferase compare
RR42_RS07555 -0.8 -0.5 potassium transporter Kup compare
RR42_RS37425 -0.8 -2.0 hypothetical protein compare
RR42_RS06460 -0.8 -2.4 alpha/beta hydrolase compare
RR42_RS09375 -0.8 -1.0 taurine dioxygenase compare
RR42_RS17105 -0.8 -3.9 Clp protease ClpX compare
RR42_RS02210 -0.8 -0.7 succinate dehydrogenase compare
RR42_RS21435 -0.8 -1.3 hypothetical protein compare
RR42_RS00240 -0.8 -2.7 nucleotide pyrophosphohydrolase compare
RR42_RS03665 -0.8 -2.0 translation initiation factor IF-1 compare
RR42_RS15020 -0.7 -3.9 (2Fe-2S)-binding protein compare
RR42_RS05125 -0.7 -1.8 malonic semialdehyde reductase compare
RR42_RS05905 -0.7 -1.8 hypothetical protein compare
RR42_RS09780 -0.7 -1.8 hypothetical protein compare
RR42_RS18930 -0.7 -2.0 BolA family transcriptional regulator compare
RR42_RS31435 -0.7 -0.8 hypothetical protein compare
RR42_RS03035 -0.7 -0.8 membrane protein compare
RR42_RS15585 -0.7 -5.1 lytic transglycosylase compare
RR42_RS02345 -0.7 -1.8 carbon monoxide dehydrogenase compare
RR42_RS20065 -0.7 -1.5 glycine cleavage system protein H compare
RR42_RS25650 -0.7 -1.0 hypothetical protein compare
RR42_RS28955 -0.7 -1.9 transcriptional regulator compare
RR42_RS17355 -0.7 -0.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For necromass as carbon source; aerobic Pseudomonas_EB271-B4-1_fractionated_DNA in Cupriavidus basilensis FW507-4G11

For necromass as carbon source; aerobic Pseudomonas_EB271-B4-1_fractionated_DNA across organisms