Experiment set13S502 for Cupriavidus basilensis FW507-4G11

Compare to:

Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall carbon source; Aerobic

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -8.0 -5.5 anthranilate phosphoribosyltransferase compare
RR42_RS16265 -5.9 -4.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16250 -5.7 -7.8 sulfate adenylyltransferase compare
RR42_RS07425 -5.5 -7.6 IclR family transcriptional regulator compare
RR42_RS16275 -5.4 -3.8 membrane protein compare
RR42_RS16255 -5.4 -9.1 sulfate adenylyltransferase compare
RR42_RS14365 -5.4 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS01845 -5.3 -3.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS19005 -5.2 -7.1 3-dehydroquinate synthase compare
RR42_RS18295 -5.1 -15.1 anthranilate synthase component I compare
RR42_RS05860 -4.8 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS06485 -4.7 -10.9 chorismate synthase compare
RR42_RS12175 -4.6 -11.1 malate synthase compare
RR42_RS16270 -4.5 -9.5 sulfite reductase compare
RR42_RS03080 -4.3 -4.2 recombinase RecA compare
RR42_RS34255 -4.1 -8.2 aldehyde dehydrogenase compare
RR42_RS01160 -4.0 -8.0 homoserine O-acetyltransferase compare
RR42_RS17355 -4.0 -1.7 hypothetical protein compare
RR42_RS04475 -4.0 -12.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16245 -3.9 -5.3 uroporphyrin-III methyltransferase compare
RR42_RS14390 -3.7 -4.1 3-isopropylmalate dehydratase compare
RR42_RS01385 -3.6 -3.1 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14400 -3.4 -4.2 isopropylmalate isomerase compare
RR42_RS14385 -3.3 -4.4 3-isopropylmalate dehydrogenase compare
RR42_RS14320 -3.2 -4.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS12550 -3.2 -3.8 hypothetical protein compare
RR42_RS18990 -3.2 -16.9 glutamate synthase compare
RR42_RS13880 -3.2 -11.2 AMP-dependent synthetase compare
RR42_RS18855 -3.2 -3.1 preprotein translocase compare
RR42_RS16280 -3.2 -5.3 transcriptional regulator compare
RR42_RS00875 -3.0 -10.8 isocitrate dehydrogenase compare
RR42_RS12040 -3.0 -8.7 MFS transporter compare
RR42_RS11655 -3.0 -2.3 heat-shock protein Hsp20 compare
RR42_RS34815 -2.9 -3.5 diguanylate cyclase compare
RR42_RS16240 -2.9 -1.7 cobalamin biosynthesis protein CbiX compare
RR42_RS04460 -2.9 -7.2 chorismate mutase compare
RR42_RS34585 -2.8 -2.1 LysR family transcriptional regulator compare
RR42_RS18300 -2.7 -3.4 anthranilate synthase subunit II compare
RR42_RS14360 -2.6 -2.6 tryptophan synthase subunit alpha compare
RR42_RS02085 -2.6 -5.7 RNA polymerase subunit sigma-54 compare
RR42_RS01290 -2.4 -4.2 thiamine biosynthesis protein ThiC compare
RR42_RS07365 -2.4 -3.3 pyruvate dehydrogenase compare
RR42_RS02810 -2.2 -1.5 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS31290 -2.1 -2.3 XRE family transcriptional regulator compare
RR42_RS18985 -2.0 -5.3 glutamate synthase compare
RR42_RS15050 -1.9 -4.5 DNA polymerase I compare
RR42_RS21040 -1.9 -1.2 hypothetical protein compare
RR42_RS06095 -1.9 -2.2 hypothetical protein compare
RR42_RS18820 -1.9 -5.7 cytochrome B compare
RR42_RS07150 -1.9 -1.4 hypothetical protein compare
RR42_RS12185 -1.9 -1.8 LysR family transcriptional regulator compare
RR42_RS02705 -1.8 -1.9 Holliday junction DNA helicase RuvA compare
RR42_RS19830 -1.8 -2.1 LysR family transcriptional regulator compare
RR42_RS04535 -1.7 -3.5 cysteine synthase compare
RR42_RS01165 -1.7 -3.1 methionine biosynthesis protein MetW compare
RR42_RS04735 -1.7 -1.6 hypothetical protein compare
RR42_RS04470 -1.7 -3.5 prephenate dehydrogenase compare
RR42_RS07615 -1.6 -1.6 3-ketoacyl-ACP reductase compare
RR42_RS19635 -1.6 -1.9 hypothetical protein compare
RR42_RS22535 -1.6 -3.0 ArsR family transcriptional regulator compare
RR42_RS21220 -1.6 -1.5 iron transporter FeoB compare
RR42_RS11520 -1.6 -2.5 ABC transporter ATP-binding protein compare
RR42_RS12545 -1.6 -7.2 aminotransferase compare
RR42_RS03530 -1.5 -1.3 hypothetical protein compare
RR42_RS31055 -1.5 -1.9 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS17490 -1.5 -3.7 NADP transhydrogenase subunit alpha compare
RR42_RS33690 -1.5 -1.2 phosphate acetyltransferase compare
RR42_RS16220 -1.4 -1.1 DNA polymerase III subunit chi compare
RR42_RS07265 -1.4 -2.3 hypothetical protein compare
RR42_RS34260 -1.4 -2.9 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS17645 -1.4 -4.0 shikimate dehydrogenase compare
RR42_RS01505 -1.4 -1.3 tRNA-Cys compare
RR42_RS06890 -1.4 -1.2 hypothetical protein compare
RR42_RS32525 -1.4 -3.8 sulfite dehydrogenase compare
RR42_RS01380 -1.4 -1.8 membrane protein compare
RR42_RS21180 -1.4 -2.1 GNAT family acetyltransferase compare
RR42_RS24605 -1.4 -6.2 TetR family transcriptional regulator compare
RR42_RS26455 -1.4 -1.3 amino acid ABC transporter ATP-binding protein compare
RR42_RS00655 -1.3 -2.2 membrane protein compare
RR42_RS23305 -1.3 -1.0 hypothetical protein compare
RR42_RS09015 -1.3 -2.0 trigger factor compare
RR42_RS18815 -1.3 -3.7 cytochrome C compare
RR42_RS13450 -1.3 -2.7 PhoU family transcriptional regulator compare
RR42_RS18930 -1.3 -2.9 BolA family transcriptional regulator compare
RR42_RS11225 -1.3 -2.8 peptide ABC transporter permease compare
RR42_RS06240 -1.3 -1.2 tryptophan--tRNA ligase compare
RR42_RS31285 -1.3 -1.3 XRE family transcriptional regulator compare
RR42_RS18430 -1.3 -1.4 prevent-host-death protein compare
RR42_RS02320 -1.3 -3.5 trehalose phosphatase compare
RR42_RS17390 -1.3 -3.2 ATP-dependent DNA helicase RecG compare
RR42_RS01775 -1.2 -3.8 glutamate--cysteine ligase compare
RR42_RS05990 -1.2 -3.8 aromatic amino acid aminotransferase compare
RR42_RS31530 -1.2 -2.5 histidine kinase compare
RR42_RS34270 -1.2 -3.3 Fis family transcriptional regulator compare
RR42_RS23880 -1.2 -1.6 hypothetical protein compare
RR42_RS17050 -1.2 -4.7 phosphoribosylglycinamide formyltransferase compare
RR42_RS05500 -1.2 -0.7 preprotein translocase subunit SecG compare
RR42_RS12180 -1.1 -2.4 haloacid dehalogenase compare
RR42_RS34605 -1.1 -2.4 hypothetical protein compare
RR42_RS18270 -1.1 -1.5 murein transglycosylase compare
RR42_RS17560 -1.1 -5.0 Fur family transcriptional regulator compare
RR42_RS23650 -1.1 -1.7 flagellar protein compare
RR42_RS27515 -1.1 -4.1 hypothetical protein compare
RR42_RS18825 -1.1 -2.0 ubiquinol-cytochrome C reductase compare
RR42_RS06255 -1.1 -1.7 lipoprotein compare
RR42_RS16930 -1.1 -1.6 sulfonate ABC transporter ATP-binding protein compare
RR42_RS30320 -1.1 -1.5 hypothetical protein compare
RR42_RS27790 -1.1 -2.0 LuxR family transcriptional regulator compare
RR42_RS02775 -1.1 -1.1 molecular chaperone SurA compare
RR42_RS02205 -1.1 -1.3 succinate dehydrogenase compare
RR42_RS28005 -1.0 -1.6 phosphonate/organophosphate ester transporter subunit compare
RR42_RS18670 -1.0 -2.2 metal-dependent hydrolase compare
RR42_RS09310 -1.0 -1.4 IclR family transcriptional regulator compare
RR42_RS07325 -1.0 -4.2 exodeoxyribonuclease III compare
RR42_RS16260 -1.0 -0.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS26080 -1.0 -0.9 hypothetical protein compare
RR42_RS02030 -1.0 -2.3 membrane protein compare
RR42_RS06250 -1.0 -1.5 dihydrodipicolinate synthase compare
RR42_RS02380 -1.0 -3.8 FAD-linked oxidase compare
RR42_RS21470 -1.0 -0.8 hypothetical protein compare
RR42_RS19090 -1.0 -1.3 cytochrome C compare
RR42_RS03035 -1.0 -0.9 membrane protein compare
RR42_RS29865 -1.0 -2.0 hypothetical protein compare
RR42_RS04770 -1.0 -1.0 methylglyoxal synthase compare
RR42_RS22185 -1.0 -2.2 LysR family transcriptional regulator compare
RR42_RS19885 -1.0 -1.5 aminoglycoside transporter compare
RR42_RS11445 -1.0 -4.0 Fis family transcriptional regulator compare
RR42_RS02385 -1.0 -1.8 hydrolase compare
RR42_RS07360 -1.0 -1.8 ATPase compare
RR42_RS03940 -1.0 -1.0 membrane protein compare
RR42_RS22745 -1.0 -2.0 phosphoribosylglycinamide formyltransferase compare
RR42_RS03485 -0.9 -1.8 type VI secretion protein compare
RR42_RS06275 -0.9 -2.9 peptidylprolyl isomerase compare
RR42_RS08470 -0.9 -1.1 hypothetical protein compare
RR42_RS06000 -0.9 -1.1 antibiotic biosynthesis monooxygenase compare
RR42_RS08085 -0.9 -1.1 hypothetical protein compare
RR42_RS25200 -0.9 -2.0 TetR family transcriptional regulator compare
RR42_RS12240 -0.9 -1.2 hypothetical protein compare
RR42_RS37400 -0.9 -0.9 6-phosphogluconolactonase compare
RR42_RS11320 -0.9 -2.1 molybdenum cofactor sulfurase compare
RR42_RS31040 -0.9 -2.3 hypothetical protein compare
RR42_RS23730 -0.9 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS10020 -0.9 -2.1 4-methylmuconolactone methylisomerase compare
RR42_RS06700 -0.9 -1.6 hypothetical protein compare
RR42_RS07180 -0.9 -2.3 hypothetical protein compare
RR42_RS26540 -0.9 -0.8 3-phosphoglycerate dehydrogenase compare
RR42_RS35295 -0.9 -1.3 diguanylate cyclase compare
RR42_RS35220 -0.9 -1.2 peptide ABC transporter ATP-binding protein compare
RR42_RS11550 -0.9 -1.8 3-oxoacyl-ACP reductase compare
RR42_RS16950 -0.9 -2.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS16740 -0.9 -1.9 hypothetical protein compare
RR42_RS08790 -0.9 -1.2 zinc-binding protein compare
RR42_RS27065 -0.9 -1.2 hypothetical protein compare
RR42_RS20260 -0.9 -1.5 hypothetical protein compare
RR42_RS17620 -0.8 -2.0 phosphatidylglycerophosphatase compare
RR42_RS15205 -0.8 -1.1 pyridoxamine 5'-phosphate oxidase compare
RR42_RS29095 -0.8 -2.0 XRE family transcriptional regulator compare
RR42_RS10000 -0.8 -1.6 LysR family transcriptional regulator compare
RR42_RS01260 -0.8 -4.7 lauroyl acyltransferase compare
RR42_RS23110 -0.8 -1.3 isochorismatase compare
RR42_RS03875 -0.8 -1.5 nucleoside 2-deoxyribosyltransferase compare
RR42_RS21690 -0.8 -0.7 acetyltransferase compare
RR42_RS03925 -0.8 -1.4 hypothetical protein compare
RR42_RS08350 -0.8 -1.4 hypothetical protein compare
RR42_RS04180 -0.8 -0.8 methyltransferase compare
RR42_RS32710 -0.8 -1.0 hypothetical protein compare
RR42_RS02930 -0.8 -1.1 AsnC family transcriptional regulator compare
RR42_RS16580 -0.8 -2.9 hypothetical protein compare
RR42_RS21075 -0.8 -0.8 phosphoribosyltransferase compare
RR42_RS17940 -0.8 -1.4 gamma-glutamyl kinase compare
RR42_RS07225 -0.8 -1.0 hypothetical protein compare
RR42_RS28015 -0.8 -2.9 phosphonate ABC transporter permease compare
RR42_RS12700 -0.8 -2.5 serine/threonine phosphatase compare
RR42_RS03005 -0.8 -2.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS11755 -0.8 -4.5 multidrug DMT transporter permease compare
RR42_RS30955 -0.8 -2.0 histidine kinase compare
RR42_RS12615 -0.8 -0.9 LexA family transcriptional regulator compare
RR42_RS08505 -0.8 -1.8 DNA-binding protein compare
RR42_RS33270 -0.8 -1.5 hypothetical protein compare
RR42_RS02150 -0.8 -0.8 membrane protein compare
RR42_RS17335 -0.8 -2.0 DeoR family transcriptional regulator compare
RR42_RS32875 -0.8 -1.7 hypothetical protein compare
RR42_RS36835 -0.8 -1.4 cytochrome P450 compare
RR42_RS10415 -0.8 -0.9 hypothetical protein compare
RR42_RS23140 -0.8 -1.1 peptidylprolyl isomerase compare
RR42_RS28805 -0.8 -2.8 hypothetical protein compare
RR42_RS21505 -0.8 -0.9 hypothetical protein compare
RR42_RS35110 -0.8 -1.4 hypothetical protein compare
RR42_RS25685 -0.8 -2.2 chromate resistance protein compare
RR42_RS33595 -0.8 -1.9 hypothetical protein compare
RR42_RS07620 -0.8 -2.2 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS15695 -0.8 -2.3 glycosyl transferase compare
RR42_RS15810 -0.8 -1.1 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS30285 -0.8 -1.6 amidohydrolase compare
RR42_RS13640 -0.8 -1.3 MarR family transcriptional regulator compare
RR42_RS13185 -0.8 -4.3 RNA polymerase sigma factor RpoS compare
RR42_RS07555 -0.8 -0.5 potassium transporter Kup compare
RR42_RS16305 -0.8 -1.7 hypothetical protein compare
RR42_RS08185 -0.8 -1.7 hypothetical protein compare
RR42_RS19710 -0.8 -2.0 ArsR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For necromass as carbon source; aerobic Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall in Cupriavidus basilensis FW507-4G11

For necromass as carbon source; aerobic Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall across organisms