Experiment set13S50 for Phocaeicola vulgatus CL09T03C04

Compare to:

Sucrose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS07200 -7.7 -7.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS08325 -7.7 -5.3 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS07170 -7.4 -10.2 tryptophan synthase subunit beta compare
HMPREF1058_RS14730 -7.3 -11.1 threonine synthase compare
HMPREF1058_RS12105 -7.1 -4.9 shikimate kinase compare
HMPREF1058_RS08830 -6.8 -8.1 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS12490 -6.6 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14565 -6.6 -15.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS06170 -6.6 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08650 -6.6 -11.0 glutamate 5-kinase compare
HMPREF1058_RS15885 -6.3 -8.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS08845 -6.3 -11.3 argininosuccinate synthase compare
HMPREF1058_RS09585 -6.3 -20.1 argininosuccinate lyase compare
HMPREF1058_RS14545 -6.2 -13.6 2-isopropylmalate synthase compare
HMPREF1058_RS14560 -6.2 -13.2 2-isopropylmalate synthase compare
HMPREF1058_RS07190 -6.2 -7.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07185 -6.1 -12.1 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS13795 -6.1 -9.3 DUF4954 family protein compare
HMPREF1058_RS15875 -6.1 -10.2 histidinol dehydrogenase compare
HMPREF1058_RS15870 -6.1 -10.1 ATP phosphoribosyltransferase compare
HMPREF1058_RS16835 -6.0 -7.1 ketol-acid reductoisomerase compare
HMPREF1058_RS08645 -5.9 -13.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS06180 -5.9 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS07955 -5.8 -14.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS14720 -5.8 -20.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08025 -5.8 -10.4 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14795 -5.8 -7.9 prephenate dehydratase compare
HMPREF1058_RS00565 -5.8 -12.8 hemolysin III family protein compare
HMPREF1058_RS16820 -5.7 -10.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14610 -5.7 -19.8 adenylosuccinate synthase compare
HMPREF1058_RS03800 -5.7 -8.7 serine hydroxymethyltransferase compare
HMPREF1058_RS12115 -5.6 -12.0 acetylglutamate kinase compare
HMPREF1058_RS16815 -5.6 -15.9 dihydroxy-acid dehydratase compare
HMPREF1058_RS17940 -5.6 -5.4 alpha-amylase compare
HMPREF1058_RS12780 -5.6 -14.5 M20 family metallo-hydrolase compare
HMPREF1058_RS08840 -5.6 -14.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS10820 -5.6 -16.1 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS17985 -5.6 -12.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS17885 -5.6 -17.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS14550 -5.5 -14.8 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS05145 -5.5 -8.4 ATP-binding protein compare
HMPREF1058_RS14770 -5.5 -10.6 prephenate dehydrogenase compare
HMPREF1058_RS14790 -5.5 -15.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS09675 -5.5 -6.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15880 -5.5 -13.2 histidinol-phosphate transaminase compare
HMPREF1058_RS16760 -5.4 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS10075 -5.4 -15.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS07175 -5.4 -13.5 anthranilate synthase component I family protein compare
HMPREF1058_RS17935 -5.3 -7.3 glycosyltransferase compare
HMPREF1058_RS15565 -5.3 -21.3 hypothetical protein compare
HMPREF1058_RS17035 -5.3 -10.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS00590 -5.2 -3.6 hypothetical protein compare
HMPREF1058_RS11270 -5.2 -13.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS08850 -5.2 -10.2 N-acetyltransferase compare
HMPREF1058_RS05780 -5.1 -8.6 PD40 domain-containing protein compare
HMPREF1058_RS10080 -5.1 -19.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS15075 -5.1 -11.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS03910 -5.1 -4.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS06195 -5.0 -13.0 diaminopimelate decarboxylase compare
HMPREF1058_RS15520 -5.0 -3.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS06175 -5.0 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS00560 -5.0 -3.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS08855 -4.9 -9.4 arginine repressor compare
HMPREF1058_RS14785 -4.9 -9.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS03000 -4.8 -9.3 IMP dehydrogenase compare
HMPREF1058_RS07040 -4.8 -18.8 tetratricopeptide repeat protein compare
HMPREF1058_RS14555 -4.8 -3.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS07625 -4.7 -2.7 hypothetical protein compare
HMPREF1058_RS11040 -4.7 -7.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS08835 -4.7 -7.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14490 -4.6 -13.3 S9 family peptidase compare
HMPREF1058_RS13655 -4.4 -14.2 cardiolipin synthase compare
HMPREF1058_RS07195 -4.4 -4.4 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS04300 -4.4 -6.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS11730 -4.4 -2.7 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS04065 -4.4 -2.2 VWA domain-containing protein compare
HMPREF1058_RS02115 -4.3 -11.5 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS04295 -4.3 -6.6 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS17775 -4.3 -6.3 hypothetical protein compare
HMPREF1058_RS03970 -4.3 -3.0 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS10995 -4.3 -10.8 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06160 -4.3 -10.1 formyltetrahydrofolate deformylase compare
HMPREF1058_RS17965 -4.3 -1.8 DUF452 family protein compare
HMPREF1058_RS01745 -4.3 -5.8 PorT family protein compare
HMPREF1058_RS11625 -4.3 -18.0 S41 family peptidase compare
HMPREF1058_RS04045 -4.2 -5.0 tetratricopeptide repeat protein compare
HMPREF1058_RS06165 -4.2 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS06330 -4.2 -6.3 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS06320 -4.2 -9.0 electron transport complex subunit RsxA compare
HMPREF1058_RS14725 -4.1 -8.5 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS17040 -4.1 -6.2 NTP transferase domain-containing protein compare
HMPREF1058_RS17045 -4.1 -5.3 hypothetical protein compare
HMPREF1058_RS17050 -4.1 -7.8 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS08640 -4.1 -2.5 acetylornithine carbamoyltransferase compare
HMPREF1058_RS16825 -4.1 -8.1 acetolactate synthase small subunit compare
HMPREF1058_RS02220 -4.0 -4.8 branched-chain amino acid aminotransferase compare
HMPREF1058_RS17060 -4.0 -7.6 HAD family hydrolase compare
HMPREF1058_RS02170 -3.9 -8.4 hypothetical protein compare
HMPREF1058_RS13970 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS16750 -3.9 -2.7 shikimate dehydrogenase compare
HMPREF1058_RS05140 -3.9 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS09685 -3.9 -15.7 tetratricopeptide repeat protein compare
HMPREF1058_RS17205 -3.9 -2.7 DUF4199 domain-containing protein compare
HMPREF1058_RS17075 -3.8 -12.6 inositol-3-phosphate synthase compare
HMPREF1058_RS17955 -3.8 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS10955 -3.8 -9.5 phosphatase PAP2 family protein compare
HMPREF1058_RS18265 -3.8 -4.5 aspartate 1-decarboxylase compare
HMPREF1058_RS00700 -3.8 -13.1 DUF4831 family protein compare
HMPREF1058_RS02110 -3.8 -15.4 NADP-dependent malic enzyme compare
HMPREF1058_RS02800 -3.7 -6.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS01640 -3.7 -17.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17975 -3.7 -8.8 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS15395 -3.6 -3.4 dihydroorotase compare
HMPREF1058_RS06325 -3.5 -4.4 electron transport complex subunit E compare
HMPREF1058_RS05930 -3.5 -8.5 MFS transporter compare
HMPREF1058_RS06335 -3.5 -11.8 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS04365 -3.5 -16.5 translocation/assembly module TamB compare
HMPREF1058_RS04080 -3.5 -3.4 AAA family ATPase compare
HMPREF1058_RS05035 -3.5 -15.5 C69 family dipeptidase compare
HMPREF1058_RS07180 -3.4 -6.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS16730 -3.4 -4.6 chorismate synthase compare
HMPREF1058_RS17130 -3.4 -2.3 tetratricopeptide repeat protein compare
HMPREF1058_RS14920 -3.4 -11.7 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS16845 -3.4 -2.3 SurA N-terminal domain-containing protein compare
HMPREF1058_RS08535 -3.4 -3.4 elongation factor P compare
HMPREF1058_RS04075 -3.4 -2.3 DUF58 domain-containing protein compare
HMPREF1058_RS17960 -3.4 -10.4 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS07735 -3.4 -5.5 chloride channel protein compare
HMPREF1058_RS06190 -3.3 -4.5 aspartate kinase compare
HMPREF1058_RS11205 -3.2 -1.8 radical SAM protein compare
HMPREF1058_RS01655 -3.2 -10.5 DUF4296 domain-containing protein compare
HMPREF1058_RS10720 -3.2 -7.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS01650 -3.2 -6.9 hypothetical protein compare
HMPREF1058_RS06340 -3.2 -5.8 electron transport complex subunit RsxC compare
HMPREF1058_RS06560 -3.1 -6.0 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17155 -3.1 -3.7 dCMP deaminase family protein compare
HMPREF1058_RS04070 -3.1 -2.1 hypothetical protein compare
HMPREF1058_RS17970 -3.0 -6.2 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS17950 -2.9 -7.4 biotin synthase BioB compare
HMPREF1058_RS06080 -2.9 -8.6 glutamine synthetase III compare
HMPREF1058_RS10840 -2.9 -2.7 hypothetical protein compare
HMPREF1058_RS17150 -2.8 -11.0 S41 family peptidase compare
HMPREF1058_RS03510 -2.8 -8.0 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS17080 -2.8 -2.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS08275 -2.8 -12.0 DoxX family protein compare
HMPREF1058_RS03085 -2.7 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS03290 -2.7 -4.3 thiamine phosphate synthase compare
HMPREF1058_RS12795 -2.7 -4.6 CYTH domain-containing protein compare
HMPREF1058_RS17190 -2.6 -6.4 hypothetical protein compare
HMPREF1058_RS16620 -2.6 -10.3 GGGtGRT protein compare
HMPREF1058_RS06225 -2.6 -3.7 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS15855 -2.6 -8.9 uridine kinase compare
HMPREF1058_RS06310 -2.6 -8.4 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS12575 -2.5 -12.2 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS04050 -2.5 -3.8 protein BatD compare
HMPREF1058_RS06345 -2.5 -7.0 Fe-S cluster domain-containing protein compare
HMPREF1058_RS09690 -2.5 -12.4 DUF4369 domain-containing protein compare
HMPREF1058_RS09610 -2.4 -7.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS14590 -2.4 -2.2 AraC family transcriptional regulator compare
HMPREF1058_RS07065 -2.4 -6.9 OmpA family protein compare
HMPREF1058_RS07205 -2.4 -10.2 type I asparaginase compare
HMPREF1058_RS11890 -2.4 -5.8 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS10335 -2.4 -3.5 hypothetical protein compare
HMPREF1058_RS02070 -2.4 -14.5 efflux RND transporter permease subunit compare
HMPREF1058_RS13605 -2.3 -5.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1058_RS16755 -2.2 -2.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS14110 -2.2 -3.5 ribosome silencing factor compare
HMPREF1058_RS03285 -2.2 -5.8 thiazole synthase compare
HMPREF1058_RS14215 -2.2 -4.2 (d)CMP kinase compare
HMPREF1058_RS06820 -2.2 -9.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS17945 -2.2 -6.1 hypothetical protein compare
HMPREF1058_RS02075 -2.2 -9.6 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS02065 -2.2 -1.8 hypothetical protein compare
HMPREF1058_RS02755 -2.2 -1.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS03245 -2.2 -2.2 thiamine phosphate synthase compare
HMPREF1058_RS06060 -2.2 -7.6 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS14205 -2.2 -9.8 6-phosphofructokinase compare
HMPREF1058_RS02135 -2.2 -12.5 phosphoenolpyruvate synthase compare
HMPREF1058_RS18400 -2.2 -6.0 RidA family protein compare
HMPREF1058_RS04035 -2.2 -3.2 hypothetical protein compare
HMPREF1058_RS02105 -2.2 -8.4 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS02080 -2.1 -12.2 TolC family protein compare
HMPREF1058_RS08295 -2.1 -6.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS05935 -2.1 -6.9 bifunctional nuclease family protein compare
HMPREF1058_RS00540 -2.1 -7.2 M23 family metallopeptidase compare
HMPREF1058_RS15570 -2.1 -13.2 hypothetical protein compare
HMPREF1058_RS07090 -2.1 -3.1 hypothetical protein compare
HMPREF1058_RS11490 -2.1 -4.0 redox-regulated ATPase YchF compare
HMPREF1058_RS16250 -2.1 -8.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS15575 -2.0 -6.4 DUF4421 domain-containing protein compare
HMPREF1058_RS03075 -2.0 -4.0 DNA helicase RecQ compare
HMPREF1058_RS03530 -2.0 -1.4 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS03265 -2.0 -11.1 2-iminoacetate synthase ThiH compare
HMPREF1058_RS03260 -2.0 -6.8 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS07440 -2.0 -6.0 aspartate--ammonia ligase compare
HMPREF1058_RS01925 -2.0 -4.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS14005 -2.0 -1.3 3-dehydroquinate synthase compare
HMPREF1058_RS15710 -1.9 -5.7 cytidine deaminase compare
HMPREF1058_RS16625 -1.9 -6.5 hypothetical protein compare
HMPREF1058_RS16240 -1.9 -2.3 o-succinylbenzoate synthase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sucrose in Phocaeicola vulgatus CL09T03C04

For carbon source Sucrose across organisms