Experiment set13S499 for Cupriavidus basilensis FW507-4G11

Compare to:

Pseudomonas_EB271-B4-1_fractionated_cell_wall carbon source; Aerobic

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.1 -4.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14390 -5.7 -3.9 3-isopropylmalate dehydratase compare
RR42_RS16255 -5.4 -7.8 sulfate adenylyltransferase compare
RR42_RS01845 -5.4 -3.3 glycerol-3-phosphate dehydrogenase compare
RR42_RS06485 -5.0 -7.9 chorismate synthase compare
RR42_RS14385 -4.8 -5.7 3-isopropylmalate dehydrogenase compare
RR42_RS01290 -4.6 -7.9 thiamine biosynthesis protein ThiC compare
RR42_RS34255 -4.5 -8.2 aldehyde dehydrogenase compare
RR42_RS19005 -4.5 -7.5 3-dehydroquinate synthase compare
RR42_RS01160 -4.3 -9.4 homoserine O-acetyltransferase compare
RR42_RS16265 -4.3 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS04475 -4.1 -9.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS07425 -4.1 -6.3 IclR family transcriptional regulator compare
RR42_RS14365 -4.1 -2.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS12175 -4.0 -10.4 malate synthase compare
RR42_RS16245 -4.0 -6.0 uroporphyrin-III methyltransferase compare
RR42_RS16250 -3.9 -7.0 sulfate adenylyltransferase compare
RR42_RS18300 -3.8 -4.2 anthranilate synthase subunit II compare
RR42_RS05955 -3.8 -1.7 hypothetical protein compare
RR42_RS03080 -3.8 -3.8 recombinase RecA compare
RR42_RS18295 -3.8 -10.9 anthranilate synthase component I compare
RR42_RS00875 -3.7 -10.3 isocitrate dehydrogenase compare
RR42_RS14320 -3.5 -6.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS02085 -3.5 -7.3 RNA polymerase subunit sigma-54 compare
RR42_RS18305 -3.5 -6.0 anthranilate phosphoribosyltransferase compare
RR42_RS16270 -3.4 -10.3 sulfite reductase compare
RR42_RS13880 -3.4 -12.2 AMP-dependent synthetase compare
RR42_RS18310 -3.2 -2.9 indole-3-glycerol-phosphate synthase compare
RR42_RS18990 -3.2 -15.1 glutamate synthase compare
RR42_RS16275 -3.2 -3.1 membrane protein compare
RR42_RS07615 -3.0 -2.6 3-ketoacyl-ACP reductase compare
RR42_RS16240 -3.0 -1.7 cobalamin biosynthesis protein CbiX compare
RR42_RS34260 -2.9 -6.3 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS14400 -2.9 -3.4 isopropylmalate isomerase compare
RR42_RS16280 -2.9 -4.9 transcriptional regulator compare
RR42_RS04460 -2.9 -6.3 chorismate mutase compare
RR42_RS12040 -2.8 -9.1 MFS transporter compare
RR42_RS05860 -2.8 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14360 -2.7 -2.8 tryptophan synthase subunit alpha compare
RR42_RS02705 -2.6 -2.3 Holliday junction DNA helicase RuvA compare
RR42_RS29865 -2.5 -3.8 hypothetical protein compare
RR42_RS21220 -2.4 -1.5 iron transporter FeoB compare
RR42_RS12185 -2.4 -2.1 LysR family transcriptional regulator compare
RR42_RS05125 -2.3 -3.3 malonic semialdehyde reductase compare
RR42_RS20570 -2.3 -2.0 biopolymer transporter ExbD compare
RR42_RS15050 -2.0 -5.8 DNA polymerase I compare
RR42_RS01165 -2.0 -2.7 methionine biosynthesis protein MetW compare
RR42_RS04535 -2.0 -2.4 cysteine synthase compare
RR42_RS12545 -1.9 -8.3 aminotransferase compare
RR42_RS34815 -1.9 -4.0 diguanylate cyclase compare
RR42_RS18985 -1.9 -3.8 glutamate synthase compare
RR42_RS31285 -1.7 -1.7 XRE family transcriptional regulator compare
RR42_RS17645 -1.7 -4.3 shikimate dehydrogenase compare
RR42_RS17390 -1.7 -4.2 ATP-dependent DNA helicase RecG compare
RR42_RS12240 -1.7 -1.6 hypothetical protein compare
RR42_RS17490 -1.7 -4.2 NADP transhydrogenase subunit alpha compare
RR42_RS27470 -1.7 -1.6 peroxiredoxin OsmC compare
RR42_RS03095 -1.6 -1.7 succinyl-CoA synthetase subunit beta compare
RR42_RS31790 -1.6 -1.6 nitrite reductase compare
RR42_RS04470 -1.6 -3.4 prephenate dehydrogenase compare
RR42_RS16220 -1.6 -1.2 DNA polymerase III subunit chi compare
RR42_RS05990 -1.6 -4.6 aromatic amino acid aminotransferase compare
RR42_RS07605 -1.5 -3.5 poly-beta-hydroxybutyrate polymerase compare
RR42_RS01775 -1.5 -4.1 glutamate--cysteine ligase compare
RR42_RS13910 -1.5 -3.1 glutamate racemase compare
RR42_RS11655 -1.5 -1.3 heat-shock protein Hsp20 compare
RR42_RS12550 -1.5 -2.3 hypothetical protein compare
RR42_RS25640 -1.5 -1.7 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS19750 -1.5 -1.4 MBL fold metallo-hydrolase compare
RR42_RS30340 -1.4 -1.8 ABC transporter permease compare
RR42_RS08390 -1.4 -1.8 hypothetical protein compare
RR42_RS03075 -1.4 -5.6 transcriptional regulator compare
RR42_RS13190 -1.4 -5.0 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS02775 -1.4 -1.9 molecular chaperone SurA compare
RR42_RS12180 -1.4 -2.7 haloacid dehalogenase compare
RR42_RS03940 -1.4 -1.5 membrane protein compare
RR42_RS11795 -1.4 -1.6 PEP synthetase regulatory protein compare
RR42_RS01435 -1.4 -2.9 short-chain dehydrogenase compare
RR42_RS24605 -1.3 -7.3 TetR family transcriptional regulator compare
RR42_RS01380 -1.3 -1.6 membrane protein compare
RR42_RS13450 -1.3 -2.4 PhoU family transcriptional regulator compare
RR42_RS28400 -1.3 -2.0 CoA-transferase compare
RR42_RS04810 -1.3 -2.6 glycine/betaine ABC transporter permease compare
RR42_RS32085 -1.3 -1.3 hypothetical protein compare
RR42_RS35450 -1.3 -1.8 hypothetical protein compare
RR42_RS11790 -1.2 -5.0 phosphoenolpyruvate synthase compare
RR42_RS21040 -1.2 -0.9 hypothetical protein compare
RR42_RS03925 -1.2 -2.4 hypothetical protein compare
RR42_RS20195 -1.2 -0.7 ATPase F0F1 compare
RR42_RS33850 -1.2 -2.5 hypothetical protein compare
RR42_RS07825 -1.2 -2.5 D-amino acid oxidase compare
RR42_RS23880 -1.2 -0.9 hypothetical protein compare
RR42_RS05430 -1.2 -1.5 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS02150 -1.2 -1.5 membrane protein compare
RR42_RS26455 -1.2 -1.2 amino acid ABC transporter ATP-binding protein compare
RR42_RS33270 -1.2 -2.9 hypothetical protein compare
RR42_RS17505 -1.2 -6.0 NAD synthetase compare
RR42_RS17940 -1.2 -2.3 gamma-glutamyl kinase compare
RR42_RS34395 -1.2 -1.3 hypothetical protein compare
RR42_RS27570 -1.2 -2.0 murein hydrolase effector protein compare
RR42_RS12590 -1.1 -1.0 50S ribosomal protein L9 compare
RR42_RS19655 -1.1 -1.2 tRNA-Ala compare
RR42_RS03035 -1.1 -1.1 membrane protein compare
RR42_RS25650 -1.1 -1.0 hypothetical protein compare
RR42_RS19485 -1.1 -1.0 general secretion pathway protein GspH compare
RR42_RS11445 -1.1 -5.0 Fis family transcriptional regulator compare
RR42_RS20370 -1.1 -0.9 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS08210 -1.1 -1.2 hypothetical protein compare
RR42_RS23920 -1.1 -1.8 hypothetical protein compare
RR42_RS02380 -1.1 -3.2 FAD-linked oxidase compare
RR42_RS24690 -1.1 -1.0 hypothetical protein compare
RR42_RS08025 -1.0 -1.7 phage Gp37Gp68 compare
RR42_RS04545 -1.0 -4.8 deacetylase compare
RR42_RS15465 -1.0 -1.4 TonB-dependent receptor compare
RR42_RS18815 -1.0 -2.6 cytochrome C compare
RR42_RS05485 -1.0 -1.6 polynucleotide phosphorylase/polyadenylase compare
RR42_RS06785 -1.0 -2.3 hypothetical protein compare
RR42_RS07945 -1.0 -1.7 ABC transporter permease compare
RR42_RS21435 -1.0 -2.3 hypothetical protein compare
RR42_RS15020 -1.0 -5.2 (2Fe-2S)-binding protein compare
RR42_RS21355 -1.0 -2.0 ABC transporter permease compare
RR42_RS16555 -1.0 -1.7 cysteine hydrolase compare
RR42_RS08220 -1.0 -1.7 hypothetical protein compare
RR42_RS07870 -1.0 -2.4 alkyl hydroperoxide reductase compare
RR42_RS04320 -1.0 -2.8 cell division protein FtsK compare
RR42_RS00410 -1.0 -2.1 transcriptional regulator compare
RR42_RS06635 -1.0 -2.9 MerR family transcriptional regulator compare
RR42_RS09255 -1.0 -3.3 copper resistance protein CopQ compare
RR42_RS20440 -0.9 -0.8 histidine kinase compare
RR42_RS21450 -0.9 -1.8 hypothetical protein compare
RR42_RS14355 -0.9 -2.7 DNA methylase N-4 compare
RR42_RS03665 -0.9 -1.5 translation initiation factor IF-1 compare
RR42_RS11520 -0.9 -1.6 ABC transporter ATP-binding protein compare
RR42_RS10440 -0.9 -2.1 heat-shock protein compare
RR42_RS36835 -0.9 -1.8 cytochrome P450 compare
RR42_RS17880 -0.9 -0.9 hypothetical protein compare
RR42_RS12250 -0.9 -1.0 sulfate ABC transporter ATP-binding protein compare
RR42_RS32495 -0.9 -1.4 shikimate kinase compare
RR42_RS01315 -0.9 -1.8 GNAT family acetyltransferase compare
RR42_RS03070 -0.9 -4.7 histidine kinase compare
RR42_RS32645 -0.9 -1.1 2-keto-4-pentenoate hydratase compare
RR42_RS12085 -0.9 -1.6 glyoxalase compare
RR42_RS12130 -0.9 -1.2 hypothetical protein compare
RR42_RS17555 -0.9 -1.0 hypothetical protein compare
RR42_RS06925 -0.9 -1.2 hypothetical protein compare
RR42_RS14885 -0.9 -1.5 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS09780 -0.9 -2.0 hypothetical protein compare
RR42_RS11755 -0.8 -4.8 multidrug DMT transporter permease compare
RR42_RS10245 -0.8 -1.3 dehydratase compare
RR42_RS18930 -0.8 -3.1 BolA family transcriptional regulator compare
RR42_RS08675 -0.8 -2.6 hypothetical protein compare
RR42_RS17620 -0.8 -2.1 phosphatidylglycerophosphatase compare
RR42_RS20815 -0.8 -1.5 phenylacetic acid degradation protein PaaI compare
RR42_RS32055 -0.8 -1.9 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) (from data) compare
RR42_RS16620 -0.8 -2.0 hypothetical protein compare
RR42_RS18825 -0.8 -2.5 ubiquinol-cytochrome C reductase compare
RR42_RS23730 -0.8 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS18820 -0.8 -3.0 cytochrome B compare
RR42_RS32090 -0.8 -2.1 hypothetical protein compare
RR42_RS05165 -0.8 -1.3 GntR family transcriptional regulator compare
RR42_RS07440 -0.8 -1.7 hypothetical protein compare
RR42_RS02590 -0.8 -1.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS13185 -0.8 -4.7 RNA polymerase sigma factor RpoS compare
RR42_RS16950 -0.8 -1.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS11065 -0.8 -2.1 phenylacetic acid degradation protein compare
RR42_RS04735 -0.8 -1.0 hypothetical protein compare
RR42_RS02315 -0.8 -4.1 threonine dehydratase compare
RR42_RS03875 -0.8 -1.5 nucleoside 2-deoxyribosyltransferase compare
RR42_RS25670 -0.8 -3.1 hypothetical protein compare
RR42_RS06095 -0.8 -1.7 hypothetical protein compare
RR42_RS04955 -0.8 -1.6 hypothetical protein compare
RR42_RS07555 -0.8 -0.5 potassium transporter Kup compare
RR42_RS31055 -0.8 -1.6 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS07920 -0.8 -0.9 cyclophilin-like superfamily protein compare
RR42_RS32930 -0.8 -1.6 twitching motility protein PilT compare
RR42_RS15200 -0.8 -2.2 phenazine biosynthesis protein PhzC/PhzF compare
RR42_RS16415 -0.8 -2.8 TetR family transcriptional regulator compare
RR42_RS07180 -0.8 -1.6 hypothetical protein compare
RR42_RS33255 -0.8 -0.8 protein-tyrosine phosphatase compare
RR42_RS16175 -0.8 -1.0 enoyl-CoA hydratase compare
RR42_RS06255 -0.8 -1.4 lipoprotein compare
RR42_RS03530 -0.8 -0.8 hypothetical protein compare
RR42_RS19085 -0.8 -1.0 cytochrome C biogenesis protein ResB compare
RR42_RS04850 -0.8 -1.7 hypothetical protein compare
RR42_RS24490 -0.8 -1.3 hypothetical protein compare
RR42_RS14625 -0.7 -1.3 formimidoylglutamase compare
RR42_RS17045 -0.7 -3.6 SAM-dependent methyltransferase compare
RR42_RS05655 -0.7 -2.9 urease accessory protein UreD compare
RR42_RS30320 -0.7 -1.3 hypothetical protein compare
RR42_RS18485 -0.7 -0.8 glutaredoxin compare
RR42_RS09240 -0.7 -1.5 MFS transporter compare
RR42_RS19830 -0.7 -1.8 LysR family transcriptional regulator compare
RR42_RS24535 -0.7 -0.9 tRNA-Asn compare
RR42_RS09810 -0.7 -2.5 hypothetical protein compare
RR42_RS05465 -0.7 -4.6 2-isopropylmalate synthase compare
RR42_RS25765 -0.7 -1.8 hypothetical protein compare
RR42_RS08005 -0.7 -2.8 hypothetical protein compare
RR42_RS36330 -0.7 -1.5 nitronate monooxygenase compare
RR42_RS36360 -0.7 -1.7 pyridine nucleotide-disulfide oxidoreductase compare
RR42_RS31535 -0.7 -2.2 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in necromass as carbon source; aerobic experiments

For necromass as carbon source; aerobic Pseudomonas_EB271-B4-1_fractionated_cell_wall across organisms