Experiment set13S48 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Glucosamine Hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09585 -7.7 -7.5 argininosuccinate lyase compare
HMPREF1058_RS08845 -7.4 -5.1 argininosuccinate synthase compare
HMPREF1058_RS12115 -7.3 -8.6 acetylglutamate kinase compare
HMPREF1058_RS14730 -6.8 -10.4 threonine synthase compare
HMPREF1058_RS14770 -6.7 -6.5 prephenate dehydrogenase compare
HMPREF1058_RS12780 -6.6 -10.1 M20 family metallo-hydrolase compare
HMPREF1058_RS15885 -6.4 -8.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS08640 -6.4 -3.5 acetylornithine carbamoyltransferase compare
HMPREF1058_RS15880 -6.2 -7.4 histidinol-phosphate transaminase compare
HMPREF1058_RS14785 -6.1 -5.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14725 -6.0 -10.8 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS03000 -5.9 -8.2 IMP dehydrogenase compare
HMPREF1058_RS15875 -5.9 -8.2 histidinol dehydrogenase compare
HMPREF1058_RS08840 -5.7 -10.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14720 -5.7 -16.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08850 -5.4 -9.6 N-acetyltransferase compare
HMPREF1058_RS14795 -5.3 -8.8 prephenate dehydratase compare
HMPREF1058_RS08650 -4.9 -8.6 glutamate 5-kinase compare
HMPREF1058_RS15870 -4.7 -8.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS09675 -4.5 -3.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS12105 -4.5 -5.9 shikimate kinase compare
HMPREF1058_RS06195 -4.5 -10.9 diaminopimelate decarboxylase compare
HMPREF1058_RS04295 -4.5 -3.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS00565 -4.3 -10.2 hemolysin III family protein compare
HMPREF1058_RS04300 -4.1 -4.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS06170 -4.1 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS16730 -4.0 -2.8 chorismate synthase compare
HMPREF1058_RS03970 -3.9 -2.7 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS15395 -3.8 -2.6 dihydroorotase compare
HMPREF1058_RS11890 -3.7 -5.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS13970 -3.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS16750 -3.5 -2.4 shikimate dehydrogenase compare
HMPREF1058_RS10075 -3.5 -12.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS10080 -3.4 -14.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS08645 -3.2 -7.0 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08295 -3.1 -8.5 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS19210 -3.0 -2.7 hypothetical protein compare
HMPREF1058_RS00595 -3.0 -4.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14545 -3.0 -10.1 2-isopropylmalate synthase compare
HMPREF1058_RS02220 -2.9 -4.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS14565 -2.9 -10.0 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS01800 -2.8 -5.0 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS10995 -2.8 -9.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS16815 -2.8 -12.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS08855 -2.7 -3.7 arginine repressor compare
HMPREF1058_RS14550 -2.7 -11.6 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS00560 -2.7 -3.3 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14610 -2.6 -14.2 adenylosuccinate synthase compare
HMPREF1058_RS17155 -2.6 -3.1 dCMP deaminase family protein compare
HMPREF1058_RS05140 -2.6 -4.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS14590 -2.5 -1.7 AraC family transcriptional regulator compare
HMPREF1058_RS15665 -2.5 -6.6 MFS transporter compare
HMPREF1058_RS03245 -2.4 -2.7 thiamine phosphate synthase compare
HMPREF1058_RS03085 -2.4 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS08025 -2.3 -7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10225 -2.3 -4.5 hypothetical protein compare
HMPREF1058_RS07955 -2.3 -12.9 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS14555 -2.2 -3.5 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS01865 -2.2 -2.3 hypothetical protein compare
HMPREF1058_RS04065 -2.2 -2.2 VWA domain-containing protein compare
HMPREF1058_RS03980 -2.2 -2.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS06175 -2.1 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16820 -2.1 -8.2 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS16835 -2.1 -7.4 ketol-acid reductoisomerase compare
HMPREF1058_RS02755 -2.1 -1.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS09445 -2.1 -1.9 tyrosine-type recombinase/integrase compare
HMPREF1058_RS17205 -2.0 -2.7 DUF4199 domain-containing protein compare
HMPREF1058_RS13635 -2.0 -3.8 gliding motility lipoprotein GldH compare
HMPREF1058_RS11205 -2.0 -1.9 radical SAM protein compare
HMPREF1058_RS14835 -1.8 -4.0 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS02405 -1.8 -11.5 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS10720 -1.8 -5.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS07655 -1.7 -2.6 hypothetical protein compare
HMPREF1058_RS02750 -1.7 -1.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS21570 -1.7 -1.1 hypothetical protein compare
HMPREF1058_RS07670 -1.7 -1.7 HAMP domain-containing histidine kinase compare
HMPREF1058_RS17080 -1.7 -2.5 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14465 -1.7 -3.6 enoyl-ACP reductase compare
HMPREF1058_RS14605 -1.7 -4.5 transcriptional repressor compare
HMPREF1058_RS03530 -1.7 -1.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS18505 -1.7 -1.3 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS14005 -1.7 -1.6 3-dehydroquinate synthase compare
HMPREF1058_RS10920 -1.6 -3.1 viroplasmin family protein compare
HMPREF1058_RS11380 -1.6 -5.0 DUF4271 domain-containing protein compare
HMPREF1058_RS06190 -1.6 -4.5 aspartate kinase compare
HMPREF1058_RS05105 -1.6 -2.2 hypothetical protein compare
HMPREF1058_RS02410 -1.6 -10.9 methylmalonyl-CoA mutase compare
HMPREF1058_RS0119825 -1.6 -7.8 DEAD/DEAH box helicase compare
HMPREF1058_RS16760 -1.6 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS08060 -1.6 -5.0 hypothetical protein compare
HMPREF1058_RS19120 -1.6 -1.6 hypothetical protein compare
HMPREF1058_RS16505 -1.6 -5.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS12490 -1.5 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS16495 -1.5 -3.0 biotin/lipoyl-binding protein compare
HMPREF1058_RS07190 -1.5 -5.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS11270 -1.5 -7.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS06320 -1.5 -3.6 electron transport complex subunit RsxA compare
HMPREF1058_RS07200 -1.4 -5.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS21520 -1.4 -1.3 hypothetical protein compare
HMPREF1058_RS04070 -1.4 -3.1 hypothetical protein compare
HMPREF1058_RS04050 -1.4 -3.5 protein BatD compare
HMPREF1058_RS14830 -1.4 -1.7 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS14285 -1.4 -3.4 DUF5056 domain-containing protein compare
HMPREF1058_RS12675 -1.3 -4.5 DUF488 family protein compare
HMPREF1058_RS04080 -1.3 -2.8 AAA family ATPase compare
HMPREF1058_RS17875 -1.3 -3.3 DUF1573 domain-containing protein compare
HMPREF1058_RS07540 -1.2 -1.5 acetyltransferase compare
HMPREF1058_RS15075 -1.2 -6.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS12070 -1.1 -2.1 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS11310 -1.1 -3.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS02170 -1.1 -4.2 hypothetical protein compare
HMPREF1058_RS15565 -1.1 -7.6 hypothetical protein compare
HMPREF1058_RS21515 -1.1 -2.7 hypothetical protein compare
HMPREF1058_RS12455 -1.1 -2.2 dUTP diphosphatase compare
HMPREF1058_RS03800 -1.1 -4.3 serine hydroxymethyltransferase compare
HMPREF1058_RS09680 -1.1 -3.0 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS15435 -1.1 -4.8 hypothetical protein compare
HMPREF1058_RS16995 -1.1 -3.4 DUF4136 domain-containing protein compare
HMPREF1058_RS05620 -1.1 -2.5 HipA N-terminal domain-containing protein compare
HMPREF1058_RS06180 -1.0 -2.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS21730 -1.0 -2.4 hypothetical protein compare
HMPREF1058_RS18265 -1.0 -2.6 aspartate 1-decarboxylase compare
HMPREF1058_RS03535 -1.0 -0.6 UvrD-helicase domain-containing protein compare
HMPREF1058_RS16260 -1.0 -2.5 hotdog fold thioesterase compare
HMPREF1058_RS06335 -1.0 -4.5 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS05145 -0.9 -4.5 ATP-binding protein compare
HMPREF1058_RS02485 -0.9 -2.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS06325 -0.9 -2.2 electron transport complex subunit E compare
HMPREF1058_RS01925 -0.9 -2.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01400 -0.9 -2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS04035 -0.9 -2.3 hypothetical protein compare
HMPREF1058_RS13250 -0.9 -1.7 DUF3853 family protein compare
HMPREF1058_RS18940 -0.9 -1.0 hypothetical protein compare
HMPREF1058_RS04375 -0.9 -3.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS17815 -0.9 -3.5 MFS transporter compare
HMPREF1058_RS18695 -0.9 -1.4 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS14790 -0.9 -2.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS05550 -0.9 -2.4 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1058_RS11040 -0.9 -3.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS07185 -0.9 -4.2 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS17045 -0.9 -2.5 hypothetical protein compare
HMPREF1058_RS10500 -0.9 -3.6 HU family DNA-binding protein compare
HMPREF1058_RS09895 -0.9 -2.4 DUF4141 domain-containing protein compare
HMPREF1058_RS16500 -0.8 -2.2 OadG family protein compare
HMPREF1058_RS00590 -0.8 -2.5 hypothetical protein compare
HMPREF1058_RS10145 -0.8 -2.7 hypothetical protein compare
HMPREF1058_RS0120000 -0.8 -2.7 hypothetical protein compare
HMPREF1058_RS09180 -0.8 -2.6 hypothetical protein compare
HMPREF1058_RS0119320 -0.8 -1.2 hypothetical protein compare
HMPREF1058_RS00600 -0.8 -3.8 diaminopimelate dehydrogenase compare
HMPREF1058_RS0119250 -0.8 -1.5 hypothetical protein compare
HMPREF1058_RS10255 -0.8 -1.3 hypothetical protein compare
HMPREF1058_RS20790 -0.8 -1.3 hypothetical protein compare
HMPREF1058_RS11915 -0.8 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08315 -0.8 -3.7 biopolymer transporter ExbD compare
HMPREF1058_RS17760 -0.8 -1.7 YkgB family protein compare
HMPREF1058_RS06350 -0.8 -2.3 SoxR reducing system RseC family protein compare
HMPREF1058_RS17880 -0.8 -1.5 diacylglycerol kinase family protein compare
HMPREF1058_RS11940 -0.7 -1.8 DUF3836 domain-containing protein compare
HMPREF1058_RS11565 -0.7 -4.3 murein L,D-transpeptidase catalytic domain family protein compare
HMPREF1058_RS01975 -0.7 -2.0 hypothetical protein compare
HMPREF1058_RS06310 -0.7 -3.2 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS10290 -0.7 -2.1 hypothetical protein compare
HMPREF1058_RS06365 -0.7 -2.0 MFS transporter compare
HMPREF1058_RS00140 -0.7 -3.3 L-rhamnose mutarotase compare
HMPREF1058_RS04800 -0.7 -2.6 ankyrin repeat domain-containing protein compare
HMPREF1058_RS21550 -0.7 -1.5 hypothetical protein compare
HMPREF1058_RS10270 -0.7 -1.1 hypothetical protein compare
HMPREF1058_RS00700 -0.7 -3.6 DUF4831 family protein compare
HMPREF1058_RS06410 -0.7 -1.5 elongation factor 4 compare
HMPREF1058_RS18685 -0.7 -2.8 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS13510 -0.7 -5.3 AAA family ATPase compare
HMPREF1058_RS17765 -0.7 -2.4 Do family serine endopeptidase compare
HMPREF1058_RS08970 -0.7 -3.2 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS04740 -0.7 -2.3 DUF5606 domain-containing protein compare
HMPREF1058_RS03545 -0.7 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS06165 -0.7 -1.9 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS01540 -0.7 -3.6 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS06345 -0.7 -3.1 Fe-S cluster domain-containing protein compare
HMPREF1058_RS03475 -0.6 -2.1 radical SAM protein compare
HMPREF1058_RS06560 -0.6 -2.9 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS05730 -0.6 -2.2 AAA family ATPase compare
HMPREF1058_RS13000 -0.6 -3.4 hypothetical protein compare
HMPREF1058_RS06895 -0.6 -3.2 ammonium transporter compare
HMPREF1058_RS21525 -0.6 -1.8 hypothetical protein compare
HMPREF1058_RS06025 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS05795 -0.6 -1.7 DMT family protein compare
HMPREF1058_RS04550 -0.6 -1.0 hypothetical protein compare
HMPREF1058_RS16400 -0.6 -3.0 DUF4738 domain-containing protein compare
HMPREF1058_RS04765 -0.6 -2.4 hypothetical protein compare
HMPREF1058_RS04075 -0.6 -1.1 DUF58 domain-containing protein compare
HMPREF1058_RS14920 -0.6 -3.6 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS08310 -0.6 -2.9 TonB family protein compare
HMPREF1058_RS06380 -0.6 -2.2 copper homeostasis protein CutC compare
HMPREF1058_RS0119685 -0.6 -0.8 DUF4133 domain-containing protein compare
HMPREF1058_RS20690 -0.6 -2.3 AAA family ATPase compare
HMPREF1058_RS05005 -0.6 -1.4 hypothetical protein compare
HMPREF1058_RS18660 -0.6 -0.8 hypothetical protein compare
HMPREF1058_RS01265 -0.6 -1.3 FHA domain-containing protein compare
HMPREF1058_RS11275 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source D-Glucosamine Hydrochloride across organisms