Experiment set13S41 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Mannose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS06170 -7.0 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS12490 -6.6 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS15885 -6.2 -9.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS09675 -6.0 -4.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS07190 -5.9 -8.1 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS14795 -5.8 -8.0 prephenate dehydratase compare
HMPREF1058_RS11730 -5.8 -2.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS08645 -5.8 -14.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS12780 -5.6 -13.1 M20 family metallo-hydrolase compare
HMPREF1058_RS16815 -5.6 -15.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS15880 -5.5 -11.8 histidinol-phosphate transaminase compare
HMPREF1058_RS07175 -5.4 -12.0 anthranilate synthase component I family protein compare
HMPREF1058_RS12105 -5.3 -6.2 shikimate kinase compare
HMPREF1058_RS14565 -5.3 -15.6 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08830 -5.3 -8.6 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS08640 -5.2 -2.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS17940 -5.2 -6.2 alpha-amylase compare
HMPREF1058_RS06175 -5.2 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS14725 -5.2 -12.4 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14550 -5.2 -16.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS08650 -5.2 -12.8 glutamate 5-kinase compare
HMPREF1058_RS14730 -5.1 -8.6 threonine synthase compare
HMPREF1058_RS14720 -5.1 -17.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08850 -5.1 -9.7 N-acetyltransferase compare
HMPREF1058_RS07200 -5.1 -9.7 tryptophan synthase subunit alpha compare
HMPREF1058_RS08845 -5.1 -11.7 argininosuccinate synthase compare
HMPREF1058_RS14610 -5.0 -19.3 adenylosuccinate synthase compare
HMPREF1058_RS07170 -5.0 -12.9 tryptophan synthase subunit beta compare
HMPREF1058_RS09585 -5.0 -18.9 argininosuccinate lyase compare
HMPREF1058_RS16820 -4.9 -13.2 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS07185 -4.9 -10.6 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS10995 -4.9 -11.0 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS03000 -4.9 -12.8 IMP dehydrogenase compare
HMPREF1058_RS14790 -4.9 -13.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS13795 -4.9 -13.4 DUF4954 family protein compare
HMPREF1058_RS17035 -4.9 -10.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS15870 -4.9 -11.1 ATP phosphoribosyltransferase compare
HMPREF1058_RS08840 -4.8 -12.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS10820 -4.8 -14.5 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS12115 -4.8 -11.8 acetylglutamate kinase compare
HMPREF1058_RS15075 -4.8 -12.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS07955 -4.8 -18.0 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS10080 -4.8 -19.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS10075 -4.8 -10.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14770 -4.7 -9.9 prephenate dehydrogenase compare
HMPREF1058_RS17935 -4.7 -9.1 glycosyltransferase compare
HMPREF1058_RS08025 -4.7 -10.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14785 -4.7 -9.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14545 -4.6 -12.0 2-isopropylmalate synthase compare
HMPREF1058_RS11270 -4.6 -13.9 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS05145 -4.6 -8.2 ATP-binding protein compare
HMPREF1058_RS00590 -4.5 -4.4 hypothetical protein compare
HMPREF1058_RS16760 -4.5 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS16835 -4.5 -11.3 ketol-acid reductoisomerase compare
HMPREF1058_RS14560 -4.5 -12.5 2-isopropylmalate synthase compare
HMPREF1058_RS11040 -4.5 -7.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS17885 -4.5 -19.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS16825 -4.4 -12.8 acetolactate synthase small subunit compare
HMPREF1058_RS08835 -4.3 -7.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS17040 -4.3 -5.1 NTP transferase domain-containing protein compare
HMPREF1058_RS07195 -4.3 -3.6 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15875 -4.3 -10.0 histidinol dehydrogenase compare
HMPREF1058_RS02170 -4.3 -7.7 hypothetical protein compare
HMPREF1058_RS06180 -4.2 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS04065 -4.2 -2.0 VWA domain-containing protein compare
HMPREF1058_RS04045 -4.1 -4.0 tetratricopeptide repeat protein compare
HMPREF1058_RS06195 -4.1 -12.9 diaminopimelate decarboxylase compare
HMPREF1058_RS17965 -4.1 -1.7 DUF452 family protein compare
HMPREF1058_RS00700 -4.1 -10.7 DUF4831 family protein compare
HMPREF1058_RS02220 -4.1 -3.9 branched-chain amino acid aminotransferase compare
HMPREF1058_RS08855 -4.0 -9.9 arginine repressor compare
HMPREF1058_RS07040 -4.0 -15.8 tetratricopeptide repeat protein compare
HMPREF1058_RS13655 -3.9 -15.3 cardiolipin synthase compare
HMPREF1058_RS03910 -3.9 -9.1 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS04300 -3.9 -6.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS17775 -3.9 -6.1 hypothetical protein compare
HMPREF1058_RS13970 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS11625 -3.8 -14.2 S41 family peptidase compare
HMPREF1058_RS03800 -3.8 -10.3 serine hydroxymethyltransferase compare
HMPREF1058_RS13635 -3.8 -4.5 gliding motility lipoprotein GldH compare
HMPREF1058_RS17985 -3.8 -12.2 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS05780 -3.8 -12.9 PD40 domain-containing protein compare
HMPREF1058_RS02115 -3.7 -10.7 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS15565 -3.7 -18.2 hypothetical protein compare
HMPREF1058_RS05140 -3.6 -3.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS04295 -3.6 -5.9 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS15520 -3.5 -5.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS03970 -3.5 -3.4 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS00565 -3.4 -8.3 hemolysin III family protein compare
HMPREF1058_RS10840 -3.4 -3.1 hypothetical protein compare
HMPREF1058_RS01745 -3.4 -6.1 PorT family protein compare
HMPREF1058_RS08325 -3.4 -6.2 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS14555 -3.4 -2.5 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS02800 -3.3 -7.9 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS15665 -3.3 -8.2 MFS transporter compare
HMPREF1058_RS04080 -3.3 -3.2 AAA family ATPase compare
HMPREF1058_RS17130 -3.3 -2.2 tetratricopeptide repeat protein compare
HMPREF1058_RS17050 -3.2 -8.0 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS17045 -3.2 -4.4 hypothetical protein compare
HMPREF1058_RS11205 -3.2 -1.8 radical SAM protein compare
HMPREF1058_RS14490 -3.2 -13.6 S9 family peptidase compare
HMPREF1058_RS16730 -3.2 -4.3 chorismate synthase compare
HMPREF1058_RS15395 -3.2 -3.5 dihydroorotase compare
HMPREF1058_RS17155 -3.1 -3.0 dCMP deaminase family protein compare
HMPREF1058_RS06335 -3.0 -10.9 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS00560 -3.0 -4.0 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS11375 -2.9 -1.7 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS08295 -2.9 -8.8 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS16750 -2.9 -3.2 shikimate dehydrogenase compare
HMPREF1058_RS16845 -2.9 -3.4 SurA N-terminal domain-containing protein compare
HMPREF1058_RS16755 -2.9 -3.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS06165 -2.8 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS01640 -2.8 -15.8 BamA/TamA family outer membrane protein compare
HMPREF1058_RS07180 -2.8 -5.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS17150 -2.8 -15.0 S41 family peptidase compare
HMPREF1058_RS00540 -2.8 -7.3 M23 family metallopeptidase compare
HMPREF1058_RS01995 -2.8 -4.5 hypothetical protein compare
HMPREF1058_RS06190 -2.7 -4.5 aspartate kinase compare
HMPREF1058_RS06560 -2.7 -6.2 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS16855 -2.7 -1.1 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS04070 -2.7 -2.6 hypothetical protein compare
HMPREF1058_RS04050 -2.6 -3.1 protein BatD compare
HMPREF1058_RS16625 -2.6 -9.4 hypothetical protein compare
HMPREF1058_RS09685 -2.6 -11.7 tetratricopeptide repeat protein compare
HMPREF1058_RS04075 -2.6 -2.5 DUF58 domain-containing protein compare
HMPREF1058_RS11490 -2.5 -5.0 redox-regulated ATPase YchF compare
HMPREF1058_RS15375 -2.5 -1.6 DUF4369 domain-containing protein compare
HMPREF1058_RS17060 -2.5 -7.5 HAD family hydrolase compare
HMPREF1058_RS06320 -2.5 -7.0 electron transport complex subunit RsxA compare
HMPREF1058_RS10955 -2.5 -7.2 phosphatase PAP2 family protein compare
HMPREF1058_RS17075 -2.4 -9.0 inositol-3-phosphate synthase compare
HMPREF1058_RS10720 -2.4 -7.4 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS03075 -2.4 -3.7 DNA helicase RecQ compare
HMPREF1058_RS04365 -2.4 -13.5 translocation/assembly module TamB compare
HMPREF1058_RS09485 -2.4 -12.2 PDZ domain-containing protein compare
HMPREF1058_RS08535 -2.4 -2.6 elongation factor P compare
HMPREF1058_RS03510 -2.3 -7.0 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS12575 -2.3 -11.2 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS08275 -2.3 -10.6 DoxX family protein compare
HMPREF1058_RS01655 -2.3 -9.6 DUF4296 domain-containing protein compare
HMPREF1058_RS02110 -2.3 -10.0 NADP-dependent malic enzyme compare
HMPREF1058_RS07205 -2.3 -5.8 type I asparaginase compare
HMPREF1058_RS15570 -2.3 -14.8 hypothetical protein compare
HMPREF1058_RS14215 -2.3 -3.3 (d)CMP kinase compare
HMPREF1058_RS06325 -2.2 -3.9 electron transport complex subunit E compare
HMPREF1058_RS03085 -2.2 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS12460 -2.2 -8.7 tetratricopeptide repeat protein compare
HMPREF1058_RS02080 -2.2 -11.0 TolC family protein compare
HMPREF1058_RS05035 -2.2 -12.1 C69 family dipeptidase compare
HMPREF1058_RS02075 -2.2 -8.2 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS00435 -2.1 -8.1 zeta toxin family protein compare
HMPREF1058_RS06345 -2.1 -4.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS17975 -2.1 -7.8 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS13730 -2.1 -3.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS16240 -2.1 -4.0 o-succinylbenzoate synthase compare
HMPREF1058_RS06160 -2.1 -7.7 formyltetrahydrofolate deformylase compare
HMPREF1058_RS02990 -2.1 -5.5 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS17960 -2.1 -7.4 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS15230 -2.0 -4.6 DUF4348 domain-containing protein compare
HMPREF1058_RS05800 -2.0 -4.3 DUF4858 domain-containing protein compare
HMPREF1058_RS09690 -2.0 -10.7 DUF4369 domain-containing protein compare
HMPREF1058_RS03545 -2.0 -4.1 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS17945 -2.0 -6.9 hypothetical protein compare
HMPREF1058_RS09610 -2.0 -7.1 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS17190 -2.0 -5.1 hypothetical protein compare
HMPREF1058_RS04035 -2.0 -2.3 hypothetical protein compare
HMPREF1058_RS06330 -2.0 -4.3 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS00595 -2.0 -3.8 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS06310 -1.9 -5.6 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS00650 -1.9 -8.7 DUF3256 family protein compare
HMPREF1058_RS16620 -1.9 -8.4 GGGtGRT protein compare
HMPREF1058_RS14005 -1.9 -1.3 3-dehydroquinate synthase compare
HMPREF1058_RS02755 -1.9 -2.2 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14590 -1.9 -1.8 AraC family transcriptional regulator compare
HMPREF1058_RS14075 -1.9 -3.8 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS18400 -1.8 -3.6 RidA family protein compare
HMPREF1058_RS10270 -1.8 -1.7 hypothetical protein compare
HMPREF1058_RS16690 -1.8 -6.0 NTP transferase domain-containing protein compare
HMPREF1058_RS02070 -1.8 -11.5 efflux RND transporter permease subunit compare
HMPREF1058_RS10255 -1.8 -2.5 hypothetical protein compare
HMPREF1058_RS07285 -1.8 -9.3 ROK family transcriptional regulator compare
HMPREF1058_RS17955 -1.8 -6.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS02135 -1.8 -10.7 phosphoenolpyruvate synthase compare
HMPREF1058_RS14920 -1.8 -8.0 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS06340 -1.8 -4.3 electron transport complex subunit RsxC compare
HMPREF1058_RS02065 -1.8 -1.6 hypothetical protein compare
HMPREF1058_RS15855 -1.8 -6.2 uridine kinase compare
HMPREF1058_RS12675 -1.8 -4.2 DUF488 family protein compare
HMPREF1058_RS02750 -1.8 -1.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06350 -1.7 -3.7 SoxR reducing system RseC family protein compare
HMPREF1058_RS15710 -1.7 -6.5 cytidine deaminase compare
HMPREF1058_RS00525 -1.7 -4.1 DUF4290 domain-containing protein compare
HMPREF1058_RS10965 -1.7 -7.5 cation transporter compare
HMPREF1058_RS12345 -1.7 -9.5 4-alpha-glucanotransferase compare
HMPREF1058_RS00515 -1.7 -4.3 YicC family protein compare
HMPREF1058_RS07230 -1.7 -3.3 single-stranded DNA-binding protein compare
HMPREF1058_RS01925 -1.7 -1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS08060 -1.7 -3.9 hypothetical protein compare
HMPREF1058_RS09240 -1.7 -4.7 type I methionyl aminopeptidase compare
HMPREF1058_RS17205 -1.7 -2.4 DUF4199 domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Mannose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Mannose across organisms