Experiment set13S37 for Phocaeicola vulgatus CL09T03C04

Compare to:

GAM 1x carbon source complex media

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09545 -5.2 -20.0 magnesium transporter CorA family protein conserved
HMPREF1058_RS17940 -4.4 -8.4 alpha-amylase compare
HMPREF1058_RS03910 -3.9 -9.1 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS17935 -3.7 -12.2 glycosyltransferase compare
HMPREF1058_RS18695 -3.6 -3.5 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS07655 -2.8 -3.3 hypothetical protein compare
HMPREF1058_RS00595 -2.7 -4.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14465 -2.7 -4.0 enoyl-ACP reductase compare
HMPREF1058_RS05140 -2.4 -5.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS17130 -2.3 -2.7 tetratricopeptide repeat protein compare
HMPREF1058_RS11375 -2.2 -2.0 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS03085 -2.2 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS02755 -2.1 -2.0 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS17930 -2.1 -9.7 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS10840 -2.0 -2.5 hypothetical protein compare
HMPREF1058_RS04025 -1.9 -7.3 hypothetical protein compare
HMPREF1058_RS02750 -1.9 -1.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS13635 -1.8 -4.3 gliding motility lipoprotein GldH compare
HMPREF1058_RS04050 -1.8 -4.4 protein BatD compare
HMPREF1058_RS18895 -1.8 -2.5 hypothetical protein compare
HMPREF1058_RS04070 -1.8 -4.3 hypothetical protein compare
HMPREF1058_RS14035 -1.8 -2.6 hypothetical protein compare
HMPREF1058_RS11270 -1.7 -7.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS01210 -1.7 -8.8 endopeptidase La compare
HMPREF1058_RS16500 -1.6 -4.1 OadG family protein compare
HMPREF1058_RS16505 -1.5 -5.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS15665 -1.5 -5.4 MFS transporter compare
HMPREF1058_RS13970 -1.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS15375 -1.5 -1.7 DUF4369 domain-containing protein compare
HMPREF1058_RS12345 -1.5 -9.2 4-alpha-glucanotransferase compare
HMPREF1058_RS14225 -1.5 -6.7 polyprenyl synthetase family protein compare
HMPREF1058_RS01800 -1.5 -3.3 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS16495 -1.5 -2.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS10955 -1.4 -5.7 phosphatase PAP2 family protein compare
HMPREF1058_RS11890 -1.4 -3.7 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS09680 -1.4 -2.9 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS05615 -1.4 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01265 -1.4 -2.8 FHA domain-containing protein compare
HMPREF1058_RS11220 -1.3 -1.3 RNA methyltransferase compare
HMPREF1058_RS0119755 -1.3 -2.9 hypothetical protein compare
HMPREF1058_RS03755 -1.3 -7.2 DUF3078 domain-containing protein compare
HMPREF1058_RS02975 -1.3 -3.3 hypothetical protein compare
HMPREF1058_RS10160 -1.3 -2.4 hypothetical protein compare
HMPREF1058_RS04080 -1.3 -3.1 AAA family ATPase compare
HMPREF1058_RS04150 -1.3 -4.2 proline/glycine betaine ABC transporter permease compare
HMPREF1058_RS02485 -1.3 -3.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS04375 -1.3 -5.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS04370 -1.2 -4.0 agmatine deiminase family protein compare
HMPREF1058_RS03110 -1.2 -6.4 ABC transporter ATP-binding protein compare
HMPREF1058_RS18560 -1.2 -3.0 recombination protein RecR compare
HMPREF1058_RS11205 -1.2 -1.1 radical SAM protein compare
HMPREF1058_RS10720 -1.2 -4.5 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS05360 -1.1 -2.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS17155 -1.1 -2.8 dCMP deaminase family protein compare
HMPREF1058_RS04145 -1.1 -3.9 glycine betaine ABC transporter substrate-binding protein compare
HMPREF1058_RS04075 -1.1 -1.8 DUF58 domain-containing protein compare
HMPREF1058_RS06335 -1.1 -4.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS11745 -1.1 -4.2 WbqC family protein compare
HMPREF1058_RS14220 -1.1 -3.0 energy transducer TonB compare
HMPREF1058_RS04300 -1.1 -3.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS18570 -1.1 -3.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS14130 -1.0 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS14505 -1.0 -3.0 mechanosensitive ion channel compare
HMPREF1058_RS06340 -1.0 -3.5 electron transport complex subunit RsxC compare
HMPREF1058_RS06320 -1.0 -3.7 electron transport complex subunit RsxA compare
HMPREF1058_RS01720 -1.0 -4.2 lysine exporter LysO family protein compare
HMPREF1058_RS00560 -1.0 -2.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS09490 -1.0 -5.5 adenosine kinase compare
HMPREF1058_RS18525 -1.0 -1.6 hypothetical protein compare
HMPREF1058_RS02495 -1.0 -3.8 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS12070 -1.0 -2.8 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS11310 -1.0 -2.6 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS14195 -1.0 -3.2 DUF1573 domain-containing protein compare
HMPREF1058_RS02480 -0.9 -2.7 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS01725 -0.9 -3.9 peptide MFS transporter compare
HMPREF1058_RS11730 -0.9 -1.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS02155 -0.9 -4.9 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS15975 -0.9 -4.2 saccharopine dehydrogenase family protein compare
HMPREF1058_RS03105 -0.9 -2.2 ABC transporter permease compare
HMPREF1058_RS06035 -0.9 -2.9 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS00440 -0.9 -2.0 hypothetical protein compare
HMPREF1058_RS01560 -0.9 -3.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS02405 -0.9 -6.6 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS11930 -0.9 -2.0 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS17205 -0.9 -1.7 DUF4199 domain-containing protein compare
HMPREF1058_RS05105 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS02410 -0.9 -6.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS13280 -0.9 -3.1 ATP-binding protein compare
HMPREF1058_RS09970 -0.9 -0.9 hypothetical protein compare
HMPREF1058_RS05920 -0.8 -1.2 hypothetical protein compare
HMPREF1058_RS16845 -0.8 -3.0 SurA N-terminal domain-containing protein compare
HMPREF1058_RS21440 -0.8 -2.7 hypothetical protein compare
HMPREF1058_RS18635 -0.8 -1.4 PepSY-like domain-containing protein compare
HMPREF1058_RS10985 -0.8 -5.0 RNA methyltransferase compare
HMPREF1058_RS18205 -0.8 -2.7 ferrous iron transport protein B compare
HMPREF1058_RS11040 -0.8 -2.9 polysaccharide deacetylase family protein compare
HMPREF1058_RS17035 -0.8 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS18685 -0.8 -3.8 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS09700 -0.8 -2.0 methionine--tRNA ligase compare
HMPREF1058_RS11380 -0.8 -2.5 DUF4271 domain-containing protein compare
HMPREF1058_RS07670 -0.8 -1.7 HAMP domain-containing histidine kinase compare
HMPREF1058_RS09610 -0.8 -3.3 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS13735 -0.8 -1.9 hypothetical protein compare
HMPREF1058_RS01715 -0.8 -3.2 LysO family transporter compare
HMPREF1058_RS06325 -0.7 -1.7 electron transport complex subunit E compare
HMPREF1058_RS0119485 -0.7 -1.8 DUF1573 domain-containing protein compare
HMPREF1058_RS05300 -0.7 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06225 -0.7 -1.7 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS20745 -0.7 -1.5 hypothetical protein compare
HMPREF1058_RS10860 -0.7 -5.6 glycosyltransferase family 8 protein compare
HMPREF1058_RS17440 -0.7 -3.0 DUF3868 domain-containing protein compare
HMPREF1058_RS07575 -0.7 -2.7 MCE family protein compare
HMPREF1058_RS04745 -0.7 -2.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15735 -0.7 -2.0 hypothetical protein compare
HMPREF1058_RS17875 -0.7 -2.2 DUF1573 domain-containing protein compare
HMPREF1058_RS03530 -0.7 -0.9 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS03170 -0.7 -2.8 hypothetical protein compare
HMPREF1058_RS16240 -0.7 -1.7 o-succinylbenzoate synthase compare
HMPREF1058_RS06350 -0.7 -2.3 SoxR reducing system RseC family protein compare
HMPREF1058_RS04805 -0.7 -3.0 hypothetical protein compare
HMPREF1058_RS11815 -0.7 -3.7 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS12505 -0.7 -2.8 RNA polymerase factor sigma-54 compare
HMPREF1058_RS07695 -0.7 -3.1 DUF4827 domain-containing protein compare
HMPREF1058_RS03190 -0.7 -1.9 V-type ATP synthase subunit D compare
HMPREF1058_RS00710 -0.7 -3.0 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS05070 -0.7 -2.0 hypothetical protein compare
HMPREF1058_RS21730 -0.7 -2.4 hypothetical protein compare
HMPREF1058_RS18565 -0.7 -1.2 hypothetical protein compare
HMPREF1058_RS11535 -0.7 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS00525 -0.7 -1.9 DUF4290 domain-containing protein compare
HMPREF1058_RS06470 -0.7 -2.4 hypothetical protein compare
HMPREF1058_RS14005 -0.7 -1.4 3-dehydroquinate synthase compare
HMPREF1058_RS07625 -0.7 -1.5 hypothetical protein compare
HMPREF1058_RS01615 -0.6 -0.8 tRNA-Lys compare
HMPREF1058_RS18155 -0.6 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS12885 -0.6 -2.4 purine-nucleoside phosphorylase compare
HMPREF1058_RS18690 -0.6 -4.1 F0F1 ATP synthase subunit alpha compare
HMPREF1058_RS14200 -0.6 -3.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS10650 -0.6 -2.9 hypothetical protein compare
HMPREF1058_RS16510 -0.6 -1.9 methylmalonyl-CoA epimerase compare
HMPREF1058_RS08770 -0.6 -2.6 cupin domain-containing protein compare
HMPREF1058_RS03585 -0.6 -2.1 hypothetical protein compare
HMPREF1058_RS06640 -0.6 -3.1 chain-length determining protein compare
HMPREF1058_RS21355 -0.6 -1.2 mobilization protein compare
HMPREF1058_RS10330 -0.6 -1.7 hypothetical protein compare
HMPREF1058_RS06585 -0.6 -2.0 PstS family phosphate ABC transporter substrate-binding protein compare
HMPREF1058_RS01995 -0.6 -1.2 hypothetical protein compare
HMPREF1058_RS04155 -0.6 -1.8 glycine betaine/L-proline ABC transporter ATP-binding protein compare
HMPREF1058_RS11275 -0.6 -2.6 hypothetical protein compare
HMPREF1058_RS00565 -0.6 -2.9 hemolysin III family protein compare
HMPREF1058_RS04045 -0.6 -2.2 tetratricopeptide repeat protein compare
HMPREF1058_RS10920 -0.6 -1.2 viroplasmin family protein compare
HMPREF1058_RS14555 -0.6 -1.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS01275 -0.6 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS04065 -0.6 -0.9 VWA domain-containing protein compare
HMPREF1058_RS03180 -0.6 -3.4 V-type ATP synthase subunit A compare
HMPREF1058_RS10875 -0.6 -4.0 glycosyltransferase compare
HMPREF1058_RS10440 -0.6 -2.2 hypothetical protein compare
HMPREF1058_RS10345 -0.6 -2.3 hypothetical protein compare
HMPREF1058_RS18700 -0.6 -2.0 class I SAM-dependent methyltransferase compare
HMPREF1058_RS18265 -0.6 -1.6 aspartate 1-decarboxylase compare
HMPREF1058_RS10270 -0.6 -1.2 hypothetical protein compare
HMPREF1058_RS13665 -0.6 -2.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04270 -0.6 -1.0 ferredoxin compare
HMPREF1058_RS14700 -0.6 -2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04290 -0.6 -2.4 DUF1015 domain-containing protein compare
HMPREF1058_RS17755 -0.5 -1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS09890 -0.5 -0.6 DUF3876 domain-containing protein compare
HMPREF1058_RS00435 -0.5 -2.1 zeta toxin family protein compare
HMPREF1058_RS07465 -0.5 -1.6 S26 family signal peptidase compare
HMPREF1058_RS03090 -0.5 -2.9 trigger factor compare
HMPREF1058_RS21010 -0.5 -1.7 MGMT family protein compare
HMPREF1058_RS02970 -0.5 -1.6 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS05145 -0.5 -2.9 ATP-binding protein compare
HMPREF1058_RS07635 -0.5 -1.0 50S ribosomal protein L9 compare
HMPREF1058_RS11475 -0.5 -2.4 chloramphenicol acetyltransferase compare
HMPREF1058_RS10885 -0.5 -3.3 glycosyltransferase compare
HMPREF1058_RS02150 -0.5 -3.5 DUF3440 domain-containing protein compare
HMPREF1058_RS05620 -0.5 -1.4 HipA N-terminal domain-containing protein compare
HMPREF1058_RS05790 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS10890 -0.5 -3.6 glycosyltransferase family 2 protein compare
HMPREF1058_RS14120 -0.5 -3.4 DUF349 domain-containing protein compare
HMPREF1058_RS10255 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS12680 -0.5 -1.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS13910 -0.5 -1.4 nucleoside deaminase compare
HMPREF1058_RS10970 -0.5 -3.1 ribonuclease R compare
HMPREF1058_RS04910 -0.5 -1.9 hypothetical protein compare
HMPREF1058_RS06080 -0.5 -2.6 glutamine synthetase III compare
HMPREF1058_RS14600 -0.5 -1.6 DNA alkylation repair protein compare
HMPREF1058_RS01065 -0.5 -1.3 hypothetical protein compare
HMPREF1058_RS06900 -0.5 -1.1 P-II family nitrogen regulator compare
HMPREF1058_RS08295 -0.5 -2.8 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS15540 -0.5 -1.3 YccF domain-containing protein compare
HMPREF1058_RS04305 -0.5 -1.7 DEAD/DEAH box helicase compare
HMPREF1058_RS17000 -0.5 -1.6 DUF4251 domain-containing protein compare
HMPREF1058_RS06645 -0.5 -3.7 SLBB domain-containing protein compare
HMPREF1058_RS17390 -0.5 -1.5 HU family DNA-binding protein compare
HMPREF1058_RS15900 -0.5 -2.3 NADH peroxidase compare
HMPREF1058_RS13230 -0.5 -2.5 hypothetical protein compare
HMPREF1058_RS03305 -0.5 -3.0 UvrD-helicase domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source complex media GAM in Phocaeicola vulgatus CL09T03C04

For carbon source complex media GAM across organisms