Experiment set13S35 for Phocaeicola vulgatus CL09T03C04

Compare to:

LB 1x carbon source complex media

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS16500 -4.7 -5.6 OadG family protein compare
HMPREF1058_RS07655 -4.1 -2.9 hypothetical protein compare
HMPREF1058_RS04080 -3.6 -3.5 AAA family ATPase compare
HMPREF1058_RS11205 -3.2 -2.2 radical SAM protein compare
HMPREF1058_RS03980 -3.2 -2.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS03085 -3.2 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS16495 -3.1 -3.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS04065 -3.1 -2.6 VWA domain-containing protein compare
HMPREF1058_RS06320 -2.8 -7.0 electron transport complex subunit RsxA compare
HMPREF1058_RS11890 -2.7 -5.5 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS16505 -2.7 -8.9 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS04075 -2.5 -2.4 DUF58 domain-containing protein compare
HMPREF1058_RS05140 -2.5 -5.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS06335 -2.4 -9.8 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS12505 -2.3 -6.0 RNA polymerase factor sigma-54 compare
HMPREF1058_RS02755 -2.2 -1.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS06345 -2.2 -5.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS14035 -2.2 -3.0 hypothetical protein compare
HMPREF1058_RS06340 -2.1 -5.6 electron transport complex subunit RsxC compare
HMPREF1058_RS10920 -2.1 -3.8 viroplasmin family protein compare
HMPREF1058_RS04070 -2.0 -3.3 hypothetical protein compare
HMPREF1058_RS17205 -2.0 -2.2 DUF4199 domain-containing protein compare
HMPREF1058_RS10840 -2.0 -2.0 hypothetical protein compare
HMPREF1058_RS13970 -2.0 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14505 -1.9 -4.5 mechanosensitive ion channel compare
HMPREF1058_RS10720 -1.9 -6.2 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS02750 -1.9 -1.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS02220 -1.8 -5.2 branched-chain amino acid aminotransferase compare
HMPREF1058_RS06310 -1.8 -6.5 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS01800 -1.7 -4.0 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS09680 -1.7 -3.9 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS04045 -1.7 -4.7 tetratricopeptide repeat protein compare
HMPREF1058_RS13635 -1.7 -4.3 gliding motility lipoprotein GldH compare
HMPREF1058_RS03450 -1.7 -2.7 hypothetical protein compare
HMPREF1058_RS16730 -1.6 -4.0 chorismate synthase compare
HMPREF1058_RS06560 -1.6 -6.2 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS21475 -1.6 -1.3 smalltalk protein compare
HMPREF1058_RS13735 -1.5 -3.4 hypothetical protein compare
HMPREF1058_RS17385 -1.5 -2.1 DUF4248 domain-containing protein compare
HMPREF1058_RS12455 -1.5 -2.3 dUTP diphosphatase compare
HMPREF1058_RS0119260 -1.5 -1.4 hypothetical protein compare
HMPREF1058_RS04050 -1.5 -4.0 protein BatD compare
HMPREF1058_RS12775 -1.4 -4.4 hypothetical protein compare
HMPREF1058_RS17815 -1.4 -5.1 MFS transporter compare
HMPREF1058_RS02975 -1.4 -2.6 hypothetical protein compare
HMPREF1058_RS16845 -1.4 -4.4 SurA N-terminal domain-containing protein compare
HMPREF1058_RS03075 -1.4 -3.8 DNA helicase RecQ compare
HMPREF1058_RS01725 -1.4 -4.8 peptide MFS transporter compare
HMPREF1058_RS06350 -1.4 -3.8 SoxR reducing system RseC family protein compare
HMPREF1058_RS02065 -1.4 -1.2 hypothetical protein compare
HMPREF1058_RS15435 -1.4 -6.8 hypothetical protein compare
HMPREF1058_RS20295 -1.3 -1.2 hypothetical protein compare
HMPREF1058_RS06325 -1.3 -3.8 electron transport complex subunit E compare
HMPREF1058_RS14225 -1.3 -5.6 polyprenyl synthetase family protein compare
HMPREF1058_RS07735 -1.3 -2.2 chloride channel protein compare
HMPREF1058_RS14590 -1.3 -1.9 AraC family transcriptional regulator compare
HMPREF1058_RS18050 -1.3 -2.5 DUF4492 domain-containing protein compare
HMPREF1058_RS04270 -1.3 -1.8 ferredoxin compare
HMPREF1058_RS11040 -1.3 -4.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS16510 -1.3 -2.3 methylmalonyl-CoA epimerase compare
HMPREF1058_RS05360 -1.3 -1.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05520 -1.3 -0.8 DUF4357 domain-containing protein compare
HMPREF1058_RS04295 -1.3 -4.5 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06330 -1.2 -3.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS09445 -1.2 -1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS11215 -1.2 -2.3 DUF4294 domain-containing protein compare
HMPREF1058_RS03080 -1.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
HMPREF1058_RS17435 -1.2 -2.3 DUF3575 domain-containing protein compare
HMPREF1058_RS02410 -1.2 -8.7 methylmalonyl-CoA mutase compare
HMPREF1058_RS17940 -1.2 -5.0 alpha-amylase compare
HMPREF1058_RS14215 -1.2 -3.4 (d)CMP kinase compare
HMPREF1058_RS11380 -1.1 -4.9 DUF4271 domain-containing protein compare
HMPREF1058_RS17055 -1.1 -3.6 flippase-like domain-containing protein compare
HMPREF1058_RS02170 -1.1 -5.5 hypothetical protein compare
HMPREF1058_RS01745 -1.1 -4.0 PorT family protein compare
HMPREF1058_RS11930 -1.1 -2.0 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS07040 -1.1 -6.1 tetratricopeptide repeat protein compare
HMPREF1058_RS09750 -1.1 -4.2 glycosyltransferase compare
HMPREF1058_RS02485 -1.1 -4.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS08295 -1.1 -5.3 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS14160 -1.1 -1.9 hypothetical protein compare
HMPREF1058_RS04150 -1.1 -4.5 proline/glycine betaine ABC transporter permease compare
HMPREF1058_RS21635 -1.1 -1.8 transcriptional regulator compare
HMPREF1058_RS08535 -1.1 -1.5 elongation factor P compare
HMPREF1058_RS03535 -1.1 -0.7 UvrD-helicase domain-containing protein compare
HMPREF1058_RS02495 -1.1 -4.5 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS11220 -1.1 -1.2 RNA methyltransferase compare
HMPREF1058_RS18565 -1.1 -1.7 hypothetical protein compare
HMPREF1058_RS10335 -1.0 -2.9 hypothetical protein compare
HMPREF1058_RS00595 -1.0 -2.6 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS01620 -1.0 -1.0 tRNA-Lys compare
HMPREF1058_RS04305 -1.0 -2.7 DEAD/DEAH box helicase compare
HMPREF1058_RS11490 -1.0 -3.0 redox-regulated ATPase YchF compare
HMPREF1058_RS15550 -1.0 -1.6 thioredoxin family protein compare
HMPREF1058_RS17155 -1.0 -2.5 dCMP deaminase family protein compare
HMPREF1058_RS17935 -1.0 -5.6 glycosyltransferase compare
HMPREF1058_RS11815 -1.0 -5.1 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS04300 -1.0 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS02405 -1.0 -6.6 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS01475 -1.0 -2.1 hypothetical protein compare
HMPREF1058_RS07390 -1.0 -6.2 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS01540 -1.0 -5.4 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS18895 -1.0 -1.3 hypothetical protein compare
HMPREF1058_RS11730 -0.9 -1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS05145 -0.9 -5.0 ATP-binding protein compare
HMPREF1058_RS00590 -0.9 -3.0 hypothetical protein compare
HMPREF1058_RS12525 -0.9 -2.1 Na/Pi cotransporter family protein compare
HMPREF1058_RS18535 -0.9 -1.6 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS06190 -0.9 -3.7 aspartate kinase compare
HMPREF1058_RS21480 -0.9 -1.9 hypothetical protein compare
HMPREF1058_RS04790 -0.9 -3.1 DUF1266 domain-containing protein compare
HMPREF1058_RS01920 -0.9 -2.3 hypothetical protein compare
HMPREF1058_RS16440 -0.9 -3.1 endonuclease MutS2 compare
HMPREF1058_RS16690 -0.9 -3.1 NTP transferase domain-containing protein compare
HMPREF1058_RS11310 -0.9 -2.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS02140 -0.9 -5.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS02800 -0.9 -3.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16755 -0.9 -1.8 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS19195 -0.9 -2.3 hypothetical protein compare
HMPREF1058_RS18005 -0.9 -4.8 anaerobic C4-dicarboxylate transporter compare
HMPREF1058_RS18870 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS10955 -0.9 -3.5 phosphatase PAP2 family protein compare
HMPREF1058_RS12885 -0.9 -3.3 purine-nucleoside phosphorylase compare
HMPREF1058_RS17080 -0.9 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS09180 -0.9 -3.7 hypothetical protein compare
HMPREF1058_RS10835 -0.9 -3.0 UDP-galactopyranose mutase compare
HMPREF1058_RS15520 -0.9 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS04145 -0.8 -3.8 glycine betaine ABC transporter substrate-binding protein compare
HMPREF1058_RS12035 -0.8 -2.9 phosphate butyryltransferase compare
HMPREF1058_RS01765 -0.8 -4.3 excinuclease ABC subunit UvrB compare
HMPREF1058_RS14835 -0.8 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS14585 -0.8 -4.8 DNA helicase RecQ compare
HMPREF1058_RS11920 -0.8 -4.1 DUF2975 domain-containing protein compare
HMPREF1058_RS07290 -0.8 -3.3 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS18160 -0.8 -2.0 hypothetical protein compare
HMPREF1058_RS17130 -0.8 -1.4 tetratricopeptide repeat protein compare
HMPREF1058_RS07420 -0.8 -5.5 exo-alpha-sialidase compare
HMPREF1058_RS03540 -0.8 -2.5 sensor histidine kinase compare
HMPREF1058_RS15430 -0.8 -5.5 aspartate-alanine antiporter compare
HMPREF1058_RS01270 -0.8 -3.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS03050 -0.8 -1.0 hypothetical protein compare
HMPREF1058_RS15575 -0.8 -3.8 DUF4421 domain-containing protein compare
HMPREF1058_RS04745 -0.8 -1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS06540 -0.8 -1.8 hypothetical protein compare
HMPREF1058_RS07245 -0.8 -2.8 Rne/Rng family ribonuclease compare
HMPREF1058_RS18660 -0.7 -0.9 hypothetical protein compare
HMPREF1058_RS12490 -0.7 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS11925 -0.7 -1.4 DUF2975 domain-containing protein compare
HMPREF1058_RS14140 -0.7 -4.4 aminoacyl-histidine dipeptidase compare
HMPREF1058_RS02155 -0.7 -3.4 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS13280 -0.7 -2.8 ATP-binding protein compare
HMPREF1058_RS07695 -0.7 -2.9 DUF4827 domain-containing protein compare
HMPREF1058_RS17395 -0.7 -1.8 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS17040 -0.7 -2.2 NTP transferase domain-containing protein compare
HMPREF1058_RS01275 -0.7 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS09785 -0.7 -1.8 DUF3945 domain-containing protein compare
HMPREF1058_RS00700 -0.7 -4.6 DUF4831 family protein compare
HMPREF1058_RS14305 -0.7 -1.3 DNA topoisomerase 3 compare
HMPREF1058_RS07575 -0.7 -2.2 MCE family protein compare
HMPREF1058_RS15265 -0.7 -1.9 queuosine precursor transporter compare
HMPREF1058_RS19015 -0.7 -1.9 hypothetical protein compare
HMPREF1058_RS17175 -0.7 -1.6 MarC family protein compare
HMPREF1058_RS17765 -0.7 -2.8 Do family serine endopeptidase compare
HMPREF1058_RS01865 -0.7 -1.5 hypothetical protein compare
HMPREF1058_RS04160 -0.7 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS02970 -0.7 -2.3 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS11500 -0.7 -3.6 DNA polymerase I compare
HMPREF1058_RS14200 -0.7 -4.4 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS12070 -0.7 -1.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS09960 -0.7 -2.3 hypothetical protein compare
HMPREF1058_RS09685 -0.7 -4.0 tetratricopeptide repeat protein compare
HMPREF1058_RS04290 -0.7 -2.3 DUF1015 domain-containing protein compare
HMPREF1058_RS06565 -0.6 -2.6 phosphate signaling complex protein PhoU compare
HMPREF1058_RS18505 -0.6 -0.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS12675 -0.6 -2.1 DUF488 family protein compare
HMPREF1058_RS12995 -0.6 -1.3 hypothetical protein compare
HMPREF1058_RS08000 -0.6 -1.5 hypothetical protein compare
HMPREF1058_RS16995 -0.6 -2.8 DUF4136 domain-containing protein compare
HMPREF1058_RS05620 -0.6 -1.3 HipA N-terminal domain-containing protein compare
HMPREF1058_RS01405 -0.6 -2.7 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS17390 -0.6 -1.3 HU family DNA-binding protein compare
HMPREF1058_RS06945 -0.6 -0.8 tRNA-Thr compare
HMPREF1058_RS05940 -0.6 -2.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS00515 -0.6 -3.1 YicC family protein compare
HMPREF1058_RS10275 -0.6 -3.8 RNA-splicing ligase RtcB compare
HMPREF1058_RS01395 -0.6 -3.0 cobyric acid synthase compare
HMPREF1058_RS01575 -0.6 -2.6 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS00565 -0.6 -3.7 hemolysin III family protein compare
HMPREF1058_RS15440 -0.6 -3.6 tetratricopeptide repeat protein compare
HMPREF1058_RS01560 -0.6 -1.6 ABC transporter ATP-binding protein compare
HMPREF1058_RS17060 -0.6 -2.7 HAD family hydrolase compare
HMPREF1058_RS08520 -0.6 -2.4 DUF59 domain-containing protein compare
HMPREF1058_RS21700 -0.6 -1.6 hypothetical protein compare
HMPREF1058_RS21305 -0.6 -1.5 hypothetical protein compare
HMPREF1058_RS04155 -0.6 -2.0 glycine betaine/L-proline ABC transporter ATP-binding protein compare
HMPREF1058_RS06380 -0.6 -2.3 copper homeostasis protein CutC compare
HMPREF1058_RS14845 -0.6 -4.1 aminopeptidase P family protein compare
HMPREF1058_RS05780 -0.6 -3.3 PD40 domain-containing protein compare
HMPREF1058_RS10850 -0.6 -3.7 glycosyltransferase family 2 protein compare
HMPREF1058_RS16250 -0.6 -3.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source complex media experiments

For carbon source complex media LB across organisms