Experiment set13S33 for Phocaeicola vulgatus CL09T03C04
Tara gum 2.5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Tara gum (2.5 mg/ml)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 6/18/25
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 2 genes in this experiment
For carbon source Tara gum in Phocaeicola vulgatus CL09T03C04
For carbon source Tara gum across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Lactose and Galactose Uptake and Utilization | 1 |
| Maltose and Maltodextrin Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| trehalose degradation VI (periplasmic) | 2 | 1 | 1 |
| D-galactose degradation I (Leloir pathway) | 5 | 4 | 1 |