Experiment set13S25 for Phocaeicola vulgatus CL09T03C04

Compare to:

Sodium pectate 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS07200 -4.7 -11.7 tryptophan synthase subunit alpha compare
HMPREF1058_RS07170 -4.1 -10.6 tryptophan synthase subunit beta compare
HMPREF1058_RS04065 -4.0 -2.6 VWA domain-containing protein compare
HMPREF1058_RS08830 -4.0 -11.5 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS13970 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS07185 -3.7 -10.7 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS15885 -3.6 -7.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS07190 -3.5 -6.2 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15395 -3.5 -3.3 dihydroorotase compare
HMPREF1058_RS09675 -3.4 -8.5 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS06175 -3.3 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS14725 -3.2 -11.0 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS10995 -3.1 -11.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS15875 -3.1 -11.5 histidinol dehydrogenase compare
HMPREF1058_RS14720 -3.0 -13.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS05140 -2.9 -4.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS17155 -2.9 -3.4 dCMP deaminase family protein compare
HMPREF1058_RS16750 -2.8 -3.2 shikimate dehydrogenase compare
HMPREF1058_RS04075 -2.7 -2.6 DUF58 domain-containing protein compare
HMPREF1058_RS03970 -2.7 -3.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS15880 -2.7 -11.7 histidinol-phosphate transaminase compare
HMPREF1058_RS07175 -2.7 -6.9 anthranilate synthase component I family protein compare
HMPREF1058_RS03800 -2.6 -8.9 serine hydroxymethyltransferase compare
HMPREF1058_RS13795 -2.6 -11.6 DUF4954 family protein compare
HMPREF1058_RS14730 -2.5 -8.7 threonine synthase compare
HMPREF1058_RS12490 -2.5 -4.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS06335 -2.5 -10.0 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS07195 -2.5 -3.6 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15075 -2.4 -10.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS14785 -2.4 -9.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08850 -2.4 -7.0 N-acetyltransferase compare
HMPREF1058_RS04300 -2.4 -6.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS14770 -2.3 -8.3 prephenate dehydrogenase compare
HMPREF1058_RS08855 -2.3 -8.1 arginine repressor compare
HMPREF1058_RS06195 -2.3 -10.4 diaminopimelate decarboxylase compare
HMPREF1058_RS15870 -2.3 -5.8 ATP phosphoribosyltransferase compare
HMPREF1058_RS16505 -2.3 -8.3 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16760 -2.2 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS03085 -2.2 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS02220 -2.2 -5.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS11730 -2.2 -2.2 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14550 -2.2 -10.2 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS01745 -2.2 -6.7 PorT family protein compare
HMPREF1058_RS08650 -2.2 -8.6 glutamate 5-kinase compare
HMPREF1058_RS12115 -2.2 -11.1 acetylglutamate kinase compare
HMPREF1058_RS06180 -2.1 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS10840 -2.1 -2.7 hypothetical protein compare
HMPREF1058_RS11890 -2.1 -5.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS14565 -2.1 -11.0 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14590 -2.1 -2.4 AraC family transcriptional regulator compare
HMPREF1058_RS03000 -2.1 -8.3 IMP dehydrogenase compare
HMPREF1058_RS13635 -2.1 -4.2 gliding motility lipoprotein GldH compare
HMPREF1058_RS06325 -2.1 -4.7 electron transport complex subunit E compare
HMPREF1058_RS14790 -2.0 -10.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08025 -2.0 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS06170 -2.0 -5.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS04375 -2.0 -7.1 carbon-nitrogen hydrolase compare
HMPREF1058_RS06320 -2.0 -7.5 electron transport complex subunit RsxA compare
HMPREF1058_RS08840 -2.0 -11.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS06190 -2.0 -5.2 aspartate kinase compare
HMPREF1058_RS14795 -2.0 -6.7 prephenate dehydratase compare
HMPREF1058_RS02755 -2.0 -2.3 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS16730 -2.0 -2.5 chorismate synthase compare
HMPREF1058_RS07955 -1.9 -12.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16820 -1.9 -8.5 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS11040 -1.9 -6.3 polysaccharide deacetylase family protein compare
HMPREF1058_RS14465 -1.9 -3.9 enoyl-ACP reductase compare
HMPREF1058_RS16835 -1.9 -7.3 ketol-acid reductoisomerase compare
HMPREF1058_RS10720 -1.8 -5.9 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS02750 -1.8 -1.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS14215 -1.8 -4.1 (d)CMP kinase compare
HMPREF1058_RS16500 -1.8 -5.0 OadG family protein compare
HMPREF1058_RS09585 -1.8 -12.9 argininosuccinate lyase compare
HMPREF1058_RS04070 -1.8 -3.4 hypothetical protein compare
HMPREF1058_RS03530 -1.8 -1.2 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS06340 -1.8 -4.7 electron transport complex subunit RsxC compare
HMPREF1058_RS00635 -1.7 -9.2 substrate-binding domain-containing protein compare
HMPREF1058_RS06310 -1.7 -5.9 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS08640 -1.7 -4.4 acetylornithine carbamoyltransferase compare
HMPREF1058_RS12780 -1.6 -6.4 M20 family metallo-hydrolase compare
HMPREF1058_RS04295 -1.6 -4.9 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS16815 -1.6 -7.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS14610 -1.6 -9.7 adenylosuccinate synthase compare
HMPREF1058_RS04050 -1.5 -3.9 protein BatD compare
HMPREF1058_RS08845 -1.5 -7.9 argininosuccinate synthase compare
HMPREF1058_RS04550 -1.5 -1.8 hypothetical protein compare
HMPREF1058_RS12105 -1.5 -1.7 shikimate kinase compare
HMPREF1058_RS14005 -1.5 -2.4 3-dehydroquinate synthase compare
HMPREF1058_RS10295 -1.5 -1.6 hypothetical protein compare
HMPREF1058_RS03980 -1.4 -1.5 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS19210 -1.4 -2.5 hypothetical protein compare
HMPREF1058_RS08645 -1.4 -6.7 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14605 -1.4 -4.0 transcriptional repressor compare
HMPREF1058_RS07655 -1.4 -2.6 hypothetical protein compare
HMPREF1058_RS05925 -1.4 -1.6 DUF5024 domain-containing protein compare
HMPREF1058_RS17815 -1.4 -4.8 MFS transporter compare
HMPREF1058_RS02170 -1.4 -5.8 hypothetical protein compare
HMPREF1058_RS07180 -1.4 -4.4 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS14560 -1.4 -7.3 2-isopropylmalate synthase compare
HMPREF1058_RS00590 -1.4 -2.6 hypothetical protein compare
HMPREF1058_RS06345 -1.4 -3.3 Fe-S cluster domain-containing protein compare
HMPREF1058_RS09685 -1.4 -6.9 tetratricopeptide repeat protein compare
HMPREF1058_RS18525 -1.3 -2.0 hypothetical protein compare
HMPREF1058_RS14490 -1.3 -7.9 S9 family peptidase compare
HMPREF1058_RS06350 -1.3 -4.8 SoxR reducing system RseC family protein compare
HMPREF1058_RS00700 -1.3 -6.1 DUF4831 family protein compare
HMPREF1058_RS05780 -1.3 -5.4 PD40 domain-containing protein compare
HMPREF1058_RS14035 -1.3 -1.8 hypothetical protein compare
HMPREF1058_RS15520 -1.3 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01800 -1.3 -2.8 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS09860 -1.3 -2.1 DUF3408 domain-containing protein compare
HMPREF1058_RS0119260 -1.3 -1.6 hypothetical protein compare
HMPREF1058_RS16845 -1.2 -3.6 SurA N-terminal domain-containing protein compare
HMPREF1058_RS15435 -1.2 -5.3 hypothetical protein compare
HMPREF1058_RS04045 -1.2 -3.9 tetratricopeptide repeat protein compare
HMPREF1058_RS14555 -1.2 -1.5 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06330 -1.2 -2.9 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS08295 -1.2 -4.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS14545 -1.1 -5.9 2-isopropylmalate synthase compare
HMPREF1058_RS11380 -1.1 -4.1 DUF4271 domain-containing protein compare
HMPREF1058_RS07060 -1.1 -4.0 DUF3869 domain-containing protein compare
HMPREF1058_RS13730 -1.1 -3.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS14505 -1.1 -3.2 mechanosensitive ion channel compare
HMPREF1058_RS18870 -1.0 -1.4 hypothetical protein compare
HMPREF1058_RS14830 -1.0 -2.2 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS06225 -1.0 -1.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS21520 -1.0 -1.1 hypothetical protein compare
HMPREF1058_RS17050 -1.0 -4.5 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS09180 -1.0 -3.7 hypothetical protein compare
HMPREF1058_RS09680 -1.0 -3.0 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS11270 -1.0 -5.2 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS10920 -1.0 -2.0 viroplasmin family protein compare
HMPREF1058_RS17395 -1.0 -2.3 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS11205 -0.9 -0.9 radical SAM protein compare
HMPREF1058_RS0119250 -0.9 -2.4 hypothetical protein compare
HMPREF1058_RS18065 -0.9 -2.2 ABC transporter ATP-binding protein compare
HMPREF1058_RS00595 -0.9 -2.0 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS04080 -0.9 -1.9 AAA family ATPase compare
HMPREF1058_RS02990 -0.9 -3.7 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS09925 -0.9 -2.4 conjugal transfer protein TraO compare
HMPREF1058_RS01405 -0.9 -3.2 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS0119830 -0.9 -0.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10495 -0.9 -1.4 rhomboid family intramembrane serine protease compare
HMPREF1058_RS12070 -0.9 -2.3 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS13965 -0.9 -1.3 hypothetical protein compare
HMPREF1058_RS11375 -0.9 -1.2 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS17195 -0.8 -3.2 hypothetical protein compare
HMPREF1058_RS18505 -0.8 -0.9 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS07535 -0.8 -1.1 hypothetical protein compare
HMPREF1058_RS00630 -0.8 -4.7 carbohydrate kinase compare
HMPREF1058_RS11625 -0.8 -6.0 S41 family peptidase compare
HMPREF1058_RS06560 -0.8 -3.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS01925 -0.8 -2.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05465 -0.8 -2.0 DNA-binding protein compare
HMPREF1058_RS01995 -0.8 -2.1 hypothetical protein compare
HMPREF1058_RS07040 -0.8 -5.2 tetratricopeptide repeat protein compare
HMPREF1058_RS16495 -0.8 -1.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS07735 -0.8 -1.8 chloride channel protein compare
HMPREF1058_RS03790 -0.8 -3.8 OmpA family protein compare
HMPREF1058_RS16825 -0.8 -4.1 acetolactate synthase small subunit compare
HMPREF1058_RS01290 -0.8 -2.4 DUF1622 domain-containing protein compare
HMPREF1058_RS11220 -0.8 -1.1 RNA methyltransferase compare
HMPREF1058_RS17130 -0.8 -1.2 tetratricopeptide repeat protein compare
HMPREF1058_RS06165 -0.8 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS20490 -0.8 -2.3 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS14580 -0.8 -4.2 tetratricopeptide repeat protein compare
HMPREF1058_RS10835 -0.8 -2.8 UDP-galactopyranose mutase compare
HMPREF1058_RS02975 -0.7 -2.0 hypothetical protein compare
HMPREF1058_RS05620 -0.7 -1.7 HipA N-terminal domain-containing protein compare
HMPREF1058_RS00615 -0.7 -5.3 TonB-dependent receptor compare
HMPREF1058_RS01540 -0.7 -3.3 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS17080 -0.7 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS00115 -0.7 -3.0 DUF4450 domain-containing protein compare
HMPREF1058_RS17785 -0.7 -3.8 hypothetical protein compare
HMPREF1058_RS01655 -0.7 -3.9 DUF4296 domain-containing protein compare
HMPREF1058_RS05615 -0.7 -0.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07670 -0.7 -1.2 HAMP domain-containing histidine kinase compare
HMPREF1058_RS17440 -0.7 -2.7 DUF3868 domain-containing protein compare
HMPREF1058_RS09590 -0.7 -2.9 hypothetical protein compare
HMPREF1058_RS21475 -0.7 -0.8 smalltalk protein compare
HMPREF1058_RS18660 -0.7 -0.7 hypothetical protein compare
HMPREF1058_RS01900 -0.7 -2.0 hypothetical protein compare
HMPREF1058_RS00620 -0.7 -3.9 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS12455 -0.7 -1.0 dUTP diphosphatase compare
HMPREF1058_RS02485 -0.7 -2.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS18535 -0.7 -1.2 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS02480 -0.7 -1.8 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS12110 -0.7 -2.9 biosynthetic arginine decarboxylase compare
HMPREF1058_RS12575 -0.6 -5.0 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS05570 -0.6 -1.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS19070 -0.6 -2.7 hypothetical protein compare
HMPREF1058_RS19015 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS07065 -0.6 -2.9 OmpA family protein compare
HMPREF1058_RS04805 -0.6 -2.5 hypothetical protein compare
HMPREF1058_RS09185 -0.6 -2.3 DUF4252 domain-containing protein compare
HMPREF1058_RS17805 -0.6 -2.7 HAD family hydrolase compare
HMPREF1058_RS00560 -0.6 -2.0 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS01395 -0.6 -3.4 cobyric acid synthase compare
HMPREF1058_RS18880 -0.6 -1.7 ATP-binding protein compare
HMPREF1058_RS08535 -0.6 -1.2 elongation factor P compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Polygalacturonic acid sodium salt across organisms