Experiment set13S192 for Ralstonia solanacearum GMI1000

Compare to:

Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

200 most detrimental genes:

  gene name fitness t score description  
RS_RS01420 +6.7 26.0 sensor histidine kinase compare
RS_RS01435 +6.4 36.8 DNA-binding response regulator compare
RS_RS05450 +6.0 8.2 XRE family transcriptional regulator compare
RS_RS04315 +5.0 12.2 hypothetical protein compare
RS_RS12575 +5.0 38.3 type II toxin-antitoxin system HipA family toxin compare
RS_RS06045 +4.6 23.3 RNA polymerase sigma factor RpoS compare
RS_RS11950 +3.0 11.1 OmpA family lipoprotein compare
RS_RS11615 +2.9 1.3 hypothetical protein compare
RS_RS13280 +2.5 2.7 hypothetical protein compare
RS_RS22345 +2.5 0.5 type II secretion system F family protein compare
RS_RS07840 +2.3 1.8 DUF2069 domain-containing protein compare
RS_RS10480 +2.3 1.6 DUF924 domain-containing protein compare
RS_RS24705 +2.1 5.2 amino acid ABC transporter permease compare
RS_RS26515 +2.1 1.4 hypothetical protein compare
RS_RS01160 +2.0 5.9 hypothetical protein compare
RS_RS09920 +2.0 3.5 nodulation factor ABC transporter ATP-binding protein NodI compare
RS_RS15470 +1.9 3.0 hypothetical protein compare
RS_RS21960 +1.9 10.9 hypothetical protein compare
RS_RS08190 +1.9 0.9 DUF465 domain-containing protein compare
RS_RS01735 +1.8 0.5 S41 family peptidase compare
RS_RS00230 +1.8 0.6 RNA polymerase-binding protein DksA compare
RS_RS13750 +1.8 14.2 transcriptional regulator compare
RS_RS15495 +1.8 1.3 hypothetical protein compare
RS_RS18630 +1.8 7.3 PadR family transcriptional regulator compare
RS_RS19680 +1.7 5.5 two-component sensor histidine kinase compare
RS_RS09615 +1.7 2.2 transcriptional regulator compare
RS_RS21000 +1.7 2.1 DUF4154 domain-containing protein compare
RS_RS25110 +1.7 8.2 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS25565 +1.7 1.4 hypothetical protein compare
RS_RS15295 +1.7 1.6 DeoR/GlpR transcriptional regulator compare
RS_RS19675 +1.6 3.7 DNA-binding response regulator compare
RS_RS00755 +1.6 1.6 M48 family peptidase compare
RS_RS01515 +1.6 0.8 ferritin compare
RS_RS05240 +1.6 1.3 PDZ domain-containing protein compare
RS_RS25105 +1.6 8.4 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS24715 +1.6 3.1 helix-turn-helix transcriptional regulator compare
RS_RS06285 +1.5 0.6 sterol desaturase family protein compare
RS_RS25085 +1.5 2.9 hypothetical protein compare
RS_RS11325 +1.5 0.6 hypothetical protein compare
RS_RS11805 +1.5 1.9 NAD(P)-dependent oxidoreductase compare
RS_RS14730 +1.5 0.8 twin-arginine translocase subunit TatC compare
RS_RS04665 +1.5 7.4 cobalamin biosynthesis protein CobD compare
RS_RS01405 +1.5 1.0 SPOR domain-containing protein compare
RS_RS21310 +1.5 6.5 regulatory protein HrpB compare
RS_RS03440 +1.5 0.7 glucose-1-phosphate thymidylyltransferase compare
RS_RS13830 +1.4 2.7 DUF937 domain-containing protein compare
RS_RS10415 +1.4 1.6 acetolactate synthase small subunit compare
RS_RS15860 +1.4 2.1 cold-shock protein compare
RS_RS17330 +1.4 2.2 DNA-binding protein compare
RS_RS16025 +1.4 3.1 hypothetical protein compare
RS_RS01895 +1.4 1.6 maleylacetoacetate isomerase compare
RS_RS08185 +1.4 2.9 hypothetical protein compare
RS_RS05025 +1.4 2.3 ABC transporter permease compare
RS_RS24125 +1.4 2.0 HAMP domain-containing histidine kinase compare
RS_RS09495 +1.3 2.3 LysR family transcriptional regulator compare
RS_RS19690 +1.3 1.6 Rrf2 family transcriptional regulator compare
RS_RS22120 +1.3 1.1 DUF2282 domain-containing protein compare
RS_RS01680 +1.3 1.8 hypothetical protein compare
RS_RS25615 +1.3 2.3 hypothetical protein compare
RS_RS00325 +1.3 7.2 LysR family transcriptional regulator compare
RS_RS13455 +1.3 0.7 DNA starvation/stationary phase protection protein compare
RS_RS08165 +1.3 1.7 hypothetical protein compare
RS_RS05740 +1.3 1.3 LysR family transcriptional regulator compare
RS_RS12605 +1.3 3.0 hypothetical protein compare
RS_RS02350 +1.3 5.6 3-hydroxyacyl-CoA dehydrogenase compare
RS_RS13845 +1.2 1.4 NADP-dependent malic enzyme compare
RS_RS21385 +1.2 1.0 oxidoreductase compare
RS_RS13205 +1.2 3.8 molecular chaperone DnaK compare
RS_RS14805 +1.2 0.9 BolA family transcriptional regulator compare
RS_RS02050 +1.2 4.7 potassium transporter compare
RS_RS22995 +1.2 1.6 DUF2239 domain-containing protein compare
RS_RS25150 +1.2 4.0 hypothetical protein compare
RS_RS14280 +1.2 5.8 porin compare
RS_RS11905 +1.2 2.3 hypothetical protein compare
RS_RS25655 +1.2 1.0 hypothetical protein compare
RS_RS10685 +1.2 6.3 D-arabinitol 4-dehydrogenase compare
RS_RS14900 +1.2 2.2 type IV pilus biogenesis protein PilO compare
RS_RS10390 +1.2 0.3 membrane protein compare
RS_RS12855 +1.2 0.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
RS_RS04565 +1.2 1.7 lytic murein transglycosylase B compare
RS_RS03370 +1.2 2.1 chemotaxis protein CheW compare
RS_RS10890 +1.2 1.6 allophanate hydrolase compare
RS_RS03660 +1.2 2.2 type IV pilus modification protein PilV compare
RS_RS16910 +1.1 2.3 hypothetical protein compare
RS_RS16090 +1.1 1.1 hypothetical protein compare
RS_RS05980 +1.1 1.1 recombination protein RecR compare
RS_RS16830 +1.1 1.2 HU family DNA-binding protein compare
RS_RS26335 +1.1 2.9 hypothetical protein compare
RS_RS14135 +1.1 2.2 type II secretion system F family protein compare
RS_RS18160 +1.1 1.1 hypothetical protein compare
RS_RS25745 +1.1 1.1 HNH endonuclease compare
RS_RS14690 +1.1 0.5 PDZ domain-containing protein compare
RS_RS04470 +1.1 0.9 glycine zipper 2TM domain-containing protein compare
RS_RS08675 +1.1 0.7 peptidyl-prolyl cis-trans isomerase compare
RS_RS03305 +1.1 0.4 type 4 prepilin peptidase 1 compare
RS_RS05080 +1.1 1.7 Fe-S assembly protein IscX compare
RS_RS09980 +1.1 2.3 peptidoglycan-binding protein compare
RS_RS12330 +1.1 4.1 hybrid sensor histidine kinase/response regulator compare
RS_RS03470 +1.1 1.5 chain-length determining protein compare
RS_RS13595 +1.0 3.2 polyisoprenoid-binding protein compare
RS_RS01715 +1.0 5.3 phosphoenolpyruvate--protein phosphotransferase compare
RS_RS08385 +1.0 1.1 hypothetical protein compare
RS_RS18680 +1.0 0.5 heavy metal translocating P-type ATPase compare
RS_RS20195 +1.0 1.5 hypothetical protein compare
RS_RS03990 +1.0 0.6 tripartite tricarboxylate transporter TctB family protein compare
RS_RS09935 +1.0 1.4 colicin V biosynthesis protein compare
RS_RS06990 +1.0 4.5 succinyldiaminopimelate transaminase compare
RS_RS00520 +1.0 1.6 hypothetical protein compare
RS_RS01620 +1.0 1.4 ferredoxin compare
RS_RS16155 +1.0 0.2 type II toxin-antitoxin system ParD family antitoxin compare
RS_RS26480 +1.0 1.1 hypothetical protein compare
RS_RS25095 +1.0 1.3 membrane protein compare
RS_RS13225 +1.0 1.4 hypothetical protein compare
RS_RS25875 +1.0 0.8 hypothetical protein compare
RS_RS10865 +1.0 1.1 Pyrrolidone-carboxylate peptidase 1 compare
RS_RS13110 +1.0 1.1 hypothetical protein compare
RS_RS20400 +1.0 1.5 hypothetical protein compare
RS_RS22025 +1.0 4.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
RS_RS16115 +1.0 1.1 hypothetical protein compare
RS_RS14285 +1.0 3.4 MFS transporter compare
RS_RS04250 +1.0 1.7 hypothetical protein compare
RS_RS03700 +1.0 1.3 Tol-Pal system beta propeller repeat protein TolB compare
RS_RS05030 +1.0 2.3 sugar ABC transporter ATP-binding protein compare
RS_RS00260 +1.0 1.9 Tyrosine recombinase XerC 1 compare
RS_RS09685 +1.0 3.3 phage tail protein I compare
RS_RS16160 +1.0 1.1 hypothetical protein compare
RS_RS22145 +0.9 2.0 RND transporter compare
RS_RS08650 +0.9 0.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
RS_RS01485 +0.9 2.0 IclR family transcriptional regulator compare
RS_RS18235 +0.9 5.0 crotonase compare
RS_RS13370 +0.9 1.7 LrgB family protein compare
RS_RS07770 +0.9 1.8 glutamate-1-semialdehyde aminotransferase compare
RS_RS02515 +0.9 1.6 tRNA dihydrouridine synthase DusB compare
RS_RS05685 +0.9 1.2 site-2 protease family protein compare
RS_RS10060 +0.9 2.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
RS_RS18685 +0.9 0.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS06345 +0.9 2.6 sn-glycerol-3-phosphate ABC transporter permease UgpE compare
RS_RS06165 +0.9 0.8 NAD-dependent deacylase compare
RS_RS12080 +0.9 1.3 hypothetical protein compare
RS_RS15820 +0.9 3.4 XRE family transcriptional regulator compare
RS_RS16225 +0.9 0.6 helix-turn-helix domain-containing protein compare
RS_RS24160 +0.9 0.4 hypothetical protein compare
RS_RS09215 +0.9 1.7 acyl-CoA thioesterase compare
RS_RS14155 +0.9 0.8 DNA gyrase inhibitor YacG compare
RS_RS06280 +0.9 2.1 polysaccharide deacetylase family protein compare
RS_RS04175 +0.9 1.5 hypothetical protein compare
RS_RS21550 +0.9 1.8 membrane protein compare
RS_RS16930 +0.9 1.2 hypothetical protein compare
RS_RS25365 +0.9 1.1 DNA cytosine methyltransferase compare
RS_RS03125 +0.9 1.1 hypothetical protein compare
RS_RS02240 +0.9 1.4 membrane protein compare
RS_RS07930 +0.9 1.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RS_RS10500 +0.9 2.9 tungsten ABC transporter substrate-binding protein compare
RS_RS10855 +0.9 1.2 DUF2383 domain-containing protein compare
RS_RS17690 +0.9 4.0 carbonic anhydrase compare
RS_RS03940 +0.9 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
RS_RS17695 +0.9 3.2 SulP family inorganic anion transporter compare
RS_RS11670 +0.9 1.4 XRE family transcriptional regulator compare
RS_RS14585 +0.9 1.4 CDGSH iron-sulfur domain-containing protein compare
RS_RS25930 +0.9 0.4 hypothetical protein compare
RS_RS09390 +0.8 1.7 cytochrome o ubiquinol oxidase subunit III compare
RS_RS26015 +0.8 1.3 hypothetical protein compare
RS_RS24425 +0.8 1.6 RidA family protein compare
RS_RS09885 +0.8 1.7 hemin uptake protein HemP compare
RS_RS08530 +0.8 1.1 hypothetical protein compare
RS_RS12310 +0.8 0.9 phospholipase D family protein compare
RS_RS08255 +0.8 0.6 hypothetical protein compare
RS_RS18715 +0.8 1.4 organic hydroperoxide resistance protein compare
RS_RS13260 +0.8 1.5 histidine utilization repressor compare
RS_RS10145 +0.8 0.9 PaaI family thioesterase compare
RS_RS07690 +0.8 2.5 phosphate transport system regulatory protein PhoU compare
RS_RS21230 +0.8 1.2 hypothetical protein compare
RS_RS12895 +0.8 1.1 hypothetical protein compare
RS_RS14385 +0.8 1.6 enoyl-CoA hydratase compare
RS_RS13200 +0.8 1.0 molecular chaperone DnaJ compare
RS_RS13805 +0.8 0.9 2-dehydro-3-deoxygalactonokinase compare
RS_RS14130 +0.8 2.1 type IV-A pilus assembly ATPase PilB compare
RS_RS22050 +0.8 5.9 hypothetical protein compare
RS_RS05185 +0.8 2.0 metal-binding protein compare
RS_RS10495 +0.8 4.2 hypothetical protein compare
RS_RS11825 +0.8 3.8 heme biosynthesis protein HemY compare
RS_RS08895 +0.8 2.0 acetyl-CoA C-acyltransferase compare
RS_RS07640 +0.8 0.5 DUF4149 domain-containing protein compare
RS_RS07385 +0.8 1.7 xanthine dehydrogenase family protein subunit M compare
RS_RS10625 +0.8 2.5 purine permease compare
RS_RS03575 +0.8 2.5 pyridoxal phosphate-dependent aminotransferase compare
RS_RS04605 +0.8 2.9 D-amino acid dehydrogenase small subunit compare
RS_RS25990 +0.8 2.3 hypothetical protein compare
RS_RS19215 +0.8 2.9 membrane protein compare
RS_RS02205 +0.8 1.5 peptidase C39 compare
RS_RS22685 +0.8 2.0 molybdenum-dependent transcriptional regulator compare
RS_RS02170 +0.8 0.9 hypothetical protein compare
RS_RS21205 +0.8 3.5 DNA-binding response regulator compare
RS_RS06790 +0.8 0.7 ribonuclease E inhibitor RraA compare
RS_RS05930 +0.8 0.9 hypothetical protein compare
RS_RS04610 +0.8 3.8 AsnC family transcriptional regulator compare
RS_RS02020 +0.8 1.3 RNA polymerase sigma-54 factor compare
RS_RS21200 +0.8 3.2 LuxR family transcriptional regulator compare
RS_RS18665 +0.8 3.4 nitronate monooxygenase compare
RS_RS10565 +0.8 2.1 amino acid ABC transporter ATP-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct in Ralstonia solanacearum GMI1000

For in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct across organisms