Experiment set13S15 for Phocaeicola vulgatus CL09T03C04

Compare to:

Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08640 -4.7 -2.6 acetylornithine carbamoyltransferase compare
HMPREF1058_RS08830 -4.4 -9.9 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS07655 -3.9 -1.7 hypothetical protein compare
HMPREF1058_RS09675 -3.8 -6.0 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS04575 -3.8 -2.3 hypothetical protein compare
HMPREF1058_RS02975 -3.6 -3.2 hypothetical protein compare
HMPREF1058_RS15870 -3.5 -9.2 ATP phosphoribosyltransferase compare
HMPREF1058_RS01585 -3.4 -5.7 tagaturonate reductase compare
HMPREF1058_RS14785 -3.4 -7.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS18870 -3.4 -1.8 hypothetical protein compare
HMPREF1058_RS14730 -3.3 -7.8 threonine synthase compare
HMPREF1058_RS15885 -3.3 -7.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS16755 -3.2 -2.8 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS07170 -3.2 -7.7 tryptophan synthase subunit beta compare
HMPREF1058_RS15880 -3.2 -10.9 histidinol-phosphate transaminase compare
HMPREF1058_RS07185 -3.2 -8.7 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS01690 -3.2 -4.8 sugar kinase compare
HMPREF1058_RS14725 -3.1 -10.5 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14555 -3.1 -2.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS08650 -3.1 -10.6 glutamate 5-kinase compare
HMPREF1058_RS08850 -3.0 -8.1 N-acetyltransferase compare
HMPREF1058_RS01590 -3.0 -9.5 glucuronate isomerase compare
HMPREF1058_RS12070 -3.0 -2.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS03000 -3.0 -8.0 IMP dehydrogenase compare
HMPREF1058_RS07180 -3.0 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS14720 -3.0 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS01665 -3.0 -2.6 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS05780 -2.9 -6.6 PD40 domain-containing protein compare
HMPREF1058_RS08535 -2.9 -2.8 elongation factor P compare
HMPREF1058_RS08645 -2.9 -10.7 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08840 -2.9 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS03800 -2.9 -8.3 serine hydroxymethyltransferase compare
HMPREF1058_RS07175 -2.8 -9.6 anthranilate synthase component I family protein compare
HMPREF1058_RS09585 -2.8 -15.4 argininosuccinate lyase compare
HMPREF1058_RS06195 -2.8 -8.6 diaminopimelate decarboxylase compare
HMPREF1058_RS14770 -2.8 -6.2 prephenate dehydrogenase compare
HMPREF1058_RS07200 -2.8 -6.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS08855 -2.7 -8.0 arginine repressor compare
HMPREF1058_RS07190 -2.7 -6.3 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15075 -2.7 -8.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS17080 -2.7 -2.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14565 -2.7 -10.2 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12780 -2.7 -8.8 M20 family metallo-hydrolase compare
HMPREF1058_RS01685 -2.6 -2.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS08845 -2.6 -7.4 argininosuccinate synthase compare
HMPREF1058_RS14545 -2.6 -7.6 2-isopropylmalate synthase compare
HMPREF1058_RS15875 -2.6 -7.5 histidinol dehydrogenase compare
HMPREF1058_RS14610 -2.6 -13.2 adenylosuccinate synthase compare
HMPREF1058_RS04295 -2.6 -2.5 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS08875 -2.6 -8.2 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS06180 -2.6 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS10995 -2.6 -8.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS00565 -2.6 -8.1 hemolysin III family protein compare
HMPREF1058_RS15435 -2.6 -7.3 hypothetical protein compare
HMPREF1058_RS12115 -2.5 -8.0 acetylglutamate kinase compare
HMPREF1058_RS06170 -2.5 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS16835 -2.5 -7.7 ketol-acid reductoisomerase compare
HMPREF1058_RS14790 -2.5 -9.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16815 -2.5 -10.4 dihydroxy-acid dehydratase compare
HMPREF1058_RS14550 -2.5 -9.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS11040 -2.4 -5.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS11490 -2.4 -4.1 redox-regulated ATPase YchF compare
HMPREF1058_RS16730 -2.4 -1.6 chorismate synthase compare
HMPREF1058_RS14035 -2.4 -1.6 hypothetical protein compare
HMPREF1058_RS01700 -2.4 -3.3 altronate dehydratase compare
HMPREF1058_RS06320 -2.3 -6.6 electron transport complex subunit RsxA compare
HMPREF1058_RS12105 -2.3 -4.2 shikimate kinase compare
HMPREF1058_RS16495 -2.3 -1.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS06175 -2.3 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS06325 -2.3 -3.1 electron transport complex subunit E compare
HMPREF1058_RS02220 -2.3 -2.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS16510 -2.3 -2.7 methylmalonyl-CoA epimerase compare
HMPREF1058_RS08025 -2.3 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS12490 -2.2 -3.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS17815 -2.2 -4.5 MFS transporter compare
HMPREF1058_RS04065 -2.2 -1.2 VWA domain-containing protein compare
HMPREF1058_RS13515 -2.2 -12.6 MFS transporter compare
HMPREF1058_RS12575 -2.2 -13.2 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS14560 -2.2 -7.8 2-isopropylmalate synthase compare
HMPREF1058_RS01540 -2.2 -6.2 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS03970 -2.2 -1.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS07955 -2.1 -12.0 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS01800 -2.1 -3.5 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS16820 -2.1 -7.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS01545 -2.1 -3.4 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS14795 -2.1 -5.1 prephenate dehydratase compare
HMPREF1058_RS15645 -2.1 -4.0 NUDIX hydrolase compare
HMPREF1058_RS07195 -2.0 -2.6 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS11270 -2.0 -9.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS01570 -2.0 -5.6 ABC transporter substrate-binding protein compare
HMPREF1058_RS17965 -1.9 -1.0 DUF452 family protein compare
HMPREF1058_RS05300 -1.9 -1.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16825 -1.9 -5.6 acetolactate synthase small subunit compare
HMPREF1058_RS14200 -1.9 -8.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS16750 -1.8 -1.3 shikimate dehydrogenase compare
HMPREF1058_RS01390 -1.8 -4.1 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS06335 -1.8 -6.3 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS16500 -1.8 -4.0 OadG family protein compare
HMPREF1058_RS01550 -1.8 -5.9 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS02065 -1.8 -1.3 hypothetical protein compare
HMPREF1058_RS10720 -1.8 -5.3 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS16690 -1.8 -4.8 NTP transferase domain-containing protein compare
HMPREF1058_RS11730 -1.8 -1.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS02800 -1.8 -6.2 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS17205 -1.8 -1.2 DUF4199 domain-containing protein compare
HMPREF1058_RS00700 -1.8 -6.6 DUF4831 family protein compare
HMPREF1058_RS10840 -1.7 -2.0 hypothetical protein compare
HMPREF1058_RS02170 -1.7 -5.0 hypothetical protein compare
HMPREF1058_RS07840 -1.7 -2.1 hypothetical protein compare
HMPREF1058_RS10080 -1.7 -9.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS00560 -1.7 -2.2 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS16760 -1.7 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS17155 -1.7 -1.2 dCMP deaminase family protein compare
HMPREF1058_RS01655 -1.7 -6.1 DUF4296 domain-containing protein compare
HMPREF1058_RS04300 -1.6 -3.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS14490 -1.6 -7.5 S9 family peptidase compare
HMPREF1058_RS02405 -1.6 -9.0 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS04045 -1.6 -2.4 tetratricopeptide repeat protein compare
HMPREF1058_RS10850 -1.6 -8.8 glycosyltransferase family 2 protein compare
HMPREF1058_RS04375 -1.6 -5.0 carbon-nitrogen hydrolase compare
HMPREF1058_RS04025 -1.6 -5.1 hypothetical protein compare
HMPREF1058_RS18695 -1.6 -1.5 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS00205 -1.6 -7.4 cation:proton antiporter compare
HMPREF1058_RS18525 -1.6 -1.3 hypothetical protein compare
HMPREF1058_RS16065 -1.5 -4.6 DUF1016 family protein compare
HMPREF1058_RS13795 -1.5 -7.3 DUF4954 family protein compare
HMPREF1058_RS15395 -1.5 -1.8 dihydroorotase compare
HMPREF1058_RS05145 -1.5 -4.5 ATP-binding protein compare
HMPREF1058_RS01405 -1.5 -4.8 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS08295 -1.5 -5.5 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS00590 -1.5 -2.8 hypothetical protein compare
HMPREF1058_RS06345 -1.5 -4.7 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06310 -1.5 -4.0 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS10075 -1.5 -6.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS01270 -1.5 -4.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS10910 -1.5 -10.2 glycosyltransferase family 39 protein compare
HMPREF1058_RS01565 -1.4 -5.3 iron ABC transporter permease compare
HMPREF1058_RS11625 -1.4 -9.4 S41 family peptidase compare
HMPREF1058_RS21475 -1.4 -0.9 smalltalk protein compare
HMPREF1058_RS04270 -1.4 -1.2 ferredoxin compare
HMPREF1058_RS07545 -1.4 -1.6 hypothetical protein compare
HMPREF1058_RS11380 -1.4 -4.7 DUF4271 domain-containing protein compare
HMPREF1058_RS09685 -1.4 -7.7 tetratricopeptide repeat protein compare
HMPREF1058_RS10835 -1.4 -4.1 UDP-galactopyranose mutase compare
HMPREF1058_RS09000 -1.4 -5.6 FecR domain-containing protein compare
HMPREF1058_RS07440 -1.4 -3.9 aspartate--ammonia ligase compare
HMPREF1058_RS01395 -1.4 -4.5 cobyric acid synthase compare
HMPREF1058_RS10900 -1.4 -4.6 glycosyltransferase compare
HMPREF1058_RS14125 -1.4 -8.8 magnesium transporter compare
HMPREF1058_RS01925 -1.4 -2.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS14285 -1.4 -1.6 DUF5056 domain-containing protein compare
HMPREF1058_RS01575 -1.3 -4.8 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS01620 -1.3 -1.0 tRNA-Lys compare
HMPREF1058_RS08835 -1.3 -4.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS01385 -1.3 -4.4 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS21615 -1.3 -2.5 hypothetical protein compare
HMPREF1058_RS12505 -1.3 -3.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS16060 -1.3 -1.7 5S ribosomal RNA compare
HMPREF1058_RS12110 -1.3 -5.4 biosynthetic arginine decarboxylase compare
HMPREF1058_RS09750 -1.3 -3.7 glycosyltransferase compare
HMPREF1058_RS21480 -1.3 -1.0 hypothetical protein compare
HMPREF1058_RS16260 -1.3 -3.3 hotdog fold thioesterase compare
HMPREF1058_RS13635 -1.3 -2.1 gliding motility lipoprotein GldH compare
HMPREF1058_RS01555 -1.3 -3.0 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS01275 -1.3 -4.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS16440 -1.3 -1.9 endonuclease MutS2 compare
HMPREF1058_RS05070 -1.3 -2.4 hypothetical protein compare
HMPREF1058_RS16505 -1.3 -4.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16070 -1.3 -3.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10255 -1.3 -2.1 hypothetical protein compare
HMPREF1058_RS01745 -1.3 -2.8 PorT family protein compare
HMPREF1058_RS15640 -1.3 -4.5 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS18335 -1.3 -2.9 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS02340 -1.3 -7.0 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS02110 -1.2 -7.0 NADP-dependent malic enzyme compare
HMPREF1058_RS06350 -1.2 -3.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS17875 -1.2 -1.8 DUF1573 domain-containing protein compare
HMPREF1058_RS15635 -1.2 -8.0 L-arabinose isomerase compare
HMPREF1058_RS06085 -1.2 -7.5 hypothetical protein compare
HMPREF1058_RS11000 -1.2 -4.8 hypothetical protein compare
HMPREF1058_RS17730 -1.2 -6.5 hypothetical protein compare
HMPREF1058_RS18295 -1.2 -7.5 response regulator compare
HMPREF1058_RS02410 -1.2 -7.5 methylmalonyl-CoA mutase compare
HMPREF1058_RS00515 -1.2 -5.0 YicC family protein compare
HMPREF1058_RS14920 -1.2 -6.5 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS14110 -1.2 -1.9 ribosome silencing factor compare
HMPREF1058_RS05360 -1.2 -1.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03545 -1.2 -2.6 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS03915 -1.2 -5.2 hypothetical protein compare
HMPREF1058_RS18205 -1.2 -2.0 ferrous iron transport protein B compare
HMPREF1058_RS03510 -1.2 -3.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS10270 -1.2 -2.2 hypothetical protein compare
HMPREF1058_RS04015 -1.2 -5.1 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS13970 -1.2 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS00310 -1.2 -6.6 zinc-binding alcohol dehydrogenase family protein conserved
HMPREF1058_RS01465 -1.2 -4.9 putative transporter compare
HMPREF1058_RS06340 -1.2 -2.8 electron transport complex subunit RsxC compare
HMPREF1058_RS18505 -1.2 -0.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS10710 -1.2 -6.1 DUF3108 domain-containing protein compare
HMPREF1058_RS13730 -1.2 -2.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Rhamnogalacturonan from soy bean pectic fibre in Phocaeicola vulgatus CL09T03C04

For carbon source Rhamnogalacturonan from soy bean pectic fibre across organisms