Experiment set13S13 for Phocaeicola vulgatus CL09T03C04

Compare to:

Glycogen from bovine liver 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS03135 +1.8 2.9 5S ribosomal RNA compare
HMPREF1058_RS05520 +1.4 1.8 DUF4357 domain-containing protein compare
HMPREF1058_RS18570 +1.4 5.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS03970 +1.4 2.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS0119615 +1.4 1.5 hypothetical protein compare
HMPREF1058_RS15395 +1.1 2.3 dihydroorotase compare
HMPREF1058_RS18560 +1.1 3.7 recombination protein RecR compare
HMPREF1058_RS21570 +1.1 1.4 hypothetical protein compare
HMPREF1058_RS10255 +1.0 2.1 hypothetical protein compare
HMPREF1058_RS02490 +1.0 4.5 four helix bundle protein compare
HMPREF1058_RS01615 +1.0 1.4 tRNA-Lys compare
HMPREF1058_RS03130 +0.9 2.6 DUF177 domain-containing protein compare
HMPREF1058_RS09865 +0.9 1.8 DUF3408 domain-containing protein compare
HMPREF1058_RS03430 +0.9 1.5 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS21720 +0.8 2.8 ribonucleoside-triphosphate reductase compare
HMPREF1058_RS18235 +0.8 3.3 3'-5' exonuclease compare
HMPREF1058_RS14130 +0.8 4.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS08025 +0.8 4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS03950 +0.8 3.0 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS05695 +0.8 3.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS13090 +0.8 2.6 UpxY family transcription antiterminator compare
HMPREF1058_RS06260 +0.8 4.4 DUF3943 domain-containing protein compare
HMPREF1058_RS10205 +0.8 2.3 hypothetical protein compare
HMPREF1058_RS07615 +0.8 3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1058_RS15910 +0.8 3.8 thioredoxin compare
HMPREF1058_RS18835 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS0119800 +0.8 2.1 toprim domain-containing protein compare
HMPREF1058_RS21050 +0.8 1.3 transposase compare
HMPREF1058_RS01065 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS10200 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS18050 +0.7 1.1 DUF4492 domain-containing protein compare
HMPREF1058_RS21620 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS09440 +0.7 1.9 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS06950 +0.7 1.2 hypothetical protein compare
HMPREF1058_RS03585 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS05005 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS06925 +0.7 2.2 glutamate synthase subunit beta compare
HMPREF1058_RS10955 +0.7 3.6 phosphatase PAP2 family protein compare
HMPREF1058_RS17535 +0.6 1.1 IS21-like element helper ATPase IstB compare
HMPREF1058_RS12980 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS18265 +0.6 1.6 aspartate 1-decarboxylase compare
HMPREF1058_RS05015 +0.6 1.7 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS08520 +0.6 2.2 DUF59 domain-containing protein compare
HMPREF1058_RS08000 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS06255 +0.6 3.2 hypothetical protein compare
HMPREF1058_RS18635 +0.6 1.3 PepSY-like domain-containing protein compare
HMPREF1058_RS16280 +0.6 1.9 MarR family transcriptional regulator compare
HMPREF1058_RS20485 +0.6 0.8 mobilization protein compare
HMPREF1058_RS02145 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS06210 +0.6 1.9 antibiotic biosynthesis monooxygenase compare
HMPREF1058_RS01645 +0.6 3.8 RNA methyltransferase compare
HMPREF1058_RS10010 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS07840 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS04090 +0.6 2.1 HU family DNA-binding protein compare
HMPREF1058_RS06080 +0.6 3.4 glutamine synthetase III compare
HMPREF1058_RS01855 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS16245 +0.6 2.8 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS15060 +0.6 3.2 outer membrane beta-barrel protein compare
HMPREF1058_RS21140 +0.6 1.7 ISAs1 family transposase compare
HMPREF1058_RS20985 +0.6 1.4 tyrosine-type recombinase/integrase compare
HMPREF1058_RS00465 +0.6 2.5 translation initiation factor compare
HMPREF1058_RS10765 +0.6 4.3 ribonuclease III compare
HMPREF1058_RS04230 +0.6 2.3 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1058_RS11485 +0.6 3.1 ketopantoate reductase family protein compare
HMPREF1058_RS01930 +0.6 2.0 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS05725 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS18890 +0.6 1.5 DUF3127 domain-containing protein compare
HMPREF1058_RS07945 +0.6 2.5 DUF4924 family protein compare
HMPREF1058_RS01620 +0.6 0.5 tRNA-Lys compare
HMPREF1058_RS15690 +0.6 3.5 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS16855 +0.6 0.6 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS21340 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS17965 +0.5 0.9 DUF452 family protein compare
HMPREF1058_RS21490 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS09715 +0.5 3.0 hypothetical protein compare
HMPREF1058_RS14985 +0.5 3.0 DUF2149 domain-containing protein compare
HMPREF1058_RS16830 +0.5 2.4 acyl-ACP thioesterase compare
HMPREF1058_RS00735 +0.5 2.8 M23 family metallopeptidase compare
HMPREF1058_RS03300 +0.5 3.1 superoxide dismutase compare
HMPREF1058_RS07620 +0.5 3.9 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS06265 +0.5 2.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS04605 +0.5 0.8 HNH endonuclease compare
HMPREF1058_RS06805 +0.5 2.5 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS16530 +0.5 2.1 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1058_RS21645 +0.5 2.1 hypothetical protein compare
HMPREF1058_RS00640 +0.5 1.3 amino acid-binding protein compare
HMPREF1058_RS07130 +0.5 2.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01235 +0.5 2.9 phosphoserine phosphatase SerB compare
HMPREF1058_RS17665 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS04585 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS13895 +0.5 1.8 MmcQ/YjbR family DNA-binding protein compare
HMPREF1058_RS20355 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS18750 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS09860 +0.5 1.2 DUF3408 domain-containing protein compare
HMPREF1058_RS09665 +0.5 2.5 class I SAM-dependent methyltransferase compare
HMPREF1058_RS06240 +0.5 2.8 YggS family pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16675 +0.5 2.8 DUF1282 family protein compare
HMPREF1058_RS05925 +0.5 0.7 DUF5024 domain-containing protein compare
HMPREF1058_RS07245 +0.5 2.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS09775 +0.5 0.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03940 +0.5 2.2 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS10455 +0.5 3.6 glycine C-acetyltransferase compare
HMPREF1058_RS10190 +0.5 1.9 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS11825 +0.5 1.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08635 +0.5 1.5 rhodanese-like domain-containing protein compare
HMPREF1058_RS16405 +0.5 2.2 PepSY-like domain-containing protein compare
HMPREF1058_RS17920 +0.5 1.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
HMPREF1058_RS03930 +0.5 2.1 ABC transporter permease compare
HMPREF1058_RS21455 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS10175 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS03000 +0.5 2.5 IMP dehydrogenase compare
HMPREF1058_RS14020 +0.5 3.3 cardiolipin synthase compare
HMPREF1058_RS16515 +0.5 1.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS05650 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS05075 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS16520 +0.4 1.2 nitroreductase family protein compare
HMPREF1058_RS07310 +0.4 2.9 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS17655 +0.4 2.1 AbgT family transporter compare
HMPREF1058_RS14065 +0.4 2.9 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS01125 +0.4 1.6 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS09175 +0.4 1.9 RNA polymerase sigma factor compare
HMPREF1058_RS01845 +0.4 1.0 site-specific integrase compare
HMPREF1058_RS12895 +0.4 2.6 signal peptide peptidase SppA compare
HMPREF1058_RS20500 +0.4 1.2 YbaN family protein compare
HMPREF1058_RS12590 +0.4 2.4 transposase compare
HMPREF1058_RS16810 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS04525 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS17435 +0.4 0.9 DUF3575 domain-containing protein compare
HMPREF1058_RS08175 +0.4 1.7 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS14500 +0.4 3.0 FprA family A-type flavoprotein compare
HMPREF1058_RS10185 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS04215 +0.4 0.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS17840 +0.4 2.1 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS04450 +0.4 2.3 OmpA family protein compare
HMPREF1058_RS21380 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS09035 +0.4 1.3 ATP-dependent Clp protease adaptor ClpS compare
HMPREF1058_RS02685 +0.4 1.7 substrate-binding domain-containing protein compare
HMPREF1058_RS02875 +0.4 2.3 cysteine synthase A compare
HMPREF1058_RS16945 +0.4 2.2 RNA polymerase sigma factor compare
HMPREF1058_RS13605 +0.4 2.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1058_RS02575 +0.4 1.7 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS0119825 +0.4 2.7 DEAD/DEAH box helicase compare
HMPREF1058_RS14050 +0.4 2.4 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS16765 +0.4 2.4 PhoH family protein compare
HMPREF1058_RS01860 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS03715 +0.4 1.8 RluA family pseudouridine synthase compare
HMPREF1058_RS06550 +0.4 2.6 DUF86 domain-containing protein compare
HMPREF1058_RS09580 +0.4 2.5 aldo/keto reductase compare
HMPREF1058_RS12675 +0.4 1.6 DUF488 family protein compare
HMPREF1058_RS01250 +0.4 2.9 DUF4738 domain-containing protein compare
HMPREF1058_RS16755 +0.4 0.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS10875 +0.4 2.9 glycosyltransferase compare
HMPREF1058_RS16935 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS18415 +0.4 1.0 VOC family protein compare
HMPREF1058_RS10055 +0.4 3.2 translational GTPase TypA compare
HMPREF1058_RS17070 +0.4 2.6 ribokinase compare
HMPREF1058_RS19075 +0.4 1.9 DUF3560 domain-containing protein compare
HMPREF1058_RS15285 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS14880 +0.4 1.7 radical SAM protein compare
HMPREF1058_RS03290 +0.4 0.8 thiamine phosphate synthase compare
HMPREF1058_RS14075 +0.4 1.8 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS21070 +0.4 1.1 potassium-transporting ATPase subunit F compare
HMPREF1058_RS05755 +0.4 1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS06740 +0.4 2.3 glycosyltransferase compare
HMPREF1058_RS09240 +0.4 2.0 type I methionyl aminopeptidase compare
HMPREF1058_RS10815 +0.4 2.4 DUF4249 domain-containing protein compare
HMPREF1058_RS04995 +0.4 2.5 putative sulfate exporter family transporter compare
HMPREF1058_RS16630 +0.4 1.4 DMP19 family protein compare
HMPREF1058_RS18670 +0.4 2.6 F0F1 ATP synthase subunit A compare
HMPREF1058_RS14270 +0.4 2.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS12600 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS04130 +0.4 0.9 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS12730 +0.4 1.9 low molecular weight phosphotyrosine protein phosphatase compare
HMPREF1058_RS0119335 +0.4 0.6 site-specific integrase compare
HMPREF1058_RS18405 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS05430 +0.4 0.8 ferritin compare
HMPREF1058_RS07725 +0.4 1.7 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS10120 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS17725 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS04990 +0.4 1.7 LysR family transcriptional regulator compare
HMPREF1058_RS17015 +0.4 2.2 SpoIID/LytB domain-containing protein compare
HMPREF1058_RS16410 +0.4 2.1 L-serine ammonia-lyase compare
HMPREF1058_RS10100 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS17010 +0.4 2.2 MFS transporter compare
HMPREF1058_RS06710 +0.4 1.6 DUF4422 domain-containing protein compare
HMPREF1058_RS04395 +0.4 1.6 thioredoxin family protein compare
HMPREF1058_RS03215 +0.4 2.6 AhpC/TSA family protein compare
HMPREF1058_RS17065 +0.4 2.6 sugar MFS transporter compare
HMPREF1058_RS11880 +0.4 3.3 hypothetical protein compare
HMPREF1058_RS09550 +0.4 2.3 PepSY domain-containing protein compare
HMPREF1058_RS07370 +0.4 2.3 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS14645 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS16955 +0.4 2.3 cold shock domain-containing protein compare
HMPREF1058_RS12315 +0.4 2.7 glycoside hydrolase family 97 protein compare
HMPREF1058_RS06880 +0.4 2.7 amidophosphoribosyltransferase compare
HMPREF1058_RS04275 +0.4 1.7 RNA-binding protein compare
HMPREF1058_RS03460 +0.4 1.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
HMPREF1058_RS09370 +0.4 1.4 DUF3467 domain-containing protein compare
HMPREF1058_RS02040 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS05490 +0.4 1.6 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Glycogen from bovine liver across organisms