Experiment set13S12 for Phocaeicola vulgatus CL09T03C04

Compare to:

Galactan from Potato 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS01700 -5.5 -5.4 altronate dehydratase compare
HMPREF1058_RS02975 -5.5 -2.0 hypothetical protein compare
HMPREF1058_RS06175 -5.3 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16690 -4.6 -4.5 NTP transferase domain-containing protein compare
HMPREF1058_RS12070 -4.6 -3.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS20485 -4.4 -2.2 mobilization protein compare
HMPREF1058_RS03000 -4.4 -11.3 IMP dehydrogenase compare
HMPREF1058_RS15435 -4.2 -8.0 hypothetical protein compare
HMPREF1058_RS11730 -4.2 -2.5 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS08535 -3.9 -3.5 elongation factor P compare
HMPREF1058_RS02065 -3.9 -1.5 hypothetical protein compare
HMPREF1058_RS12490 -3.8 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS08850 -3.8 -11.1 N-acetyltransferase compare
HMPREF1058_RS06195 -3.7 -9.7 diaminopimelate decarboxylase compare
HMPREF1058_RS11040 -3.7 -8.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS15870 -3.7 -8.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS11270 -3.7 -13.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS01585 -3.7 -6.1 tagaturonate reductase compare
HMPREF1058_RS06170 -3.7 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08650 -3.6 -9.1 glutamate 5-kinase compare
HMPREF1058_RS09745 -3.6 -10.5 glycosyltransferase compare
HMPREF1058_RS06325 -3.6 -2.5 electron transport complex subunit E compare
HMPREF1058_RS12105 -3.6 -8.2 shikimate kinase compare
HMPREF1058_RS14035 -3.5 -2.2 hypothetical protein compare
HMPREF1058_RS16755 -3.5 -3.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS00565 -3.5 -11.1 hemolysin III family protein compare
HMPREF1058_RS14215 -3.5 -4.1 (d)CMP kinase compare
HMPREF1058_RS08845 -3.5 -10.4 argininosuccinate synthase compare
HMPREF1058_RS01390 -3.5 -4.7 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS15875 -3.4 -9.7 histidinol dehydrogenase compare
HMPREF1058_RS11915 -3.4 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06350 -3.4 -6.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS12780 -3.3 -10.7 M20 family metallo-hydrolase compare
HMPREF1058_RS12115 -3.3 -11.2 acetylglutamate kinase compare
HMPREF1058_RS18160 -3.3 -2.6 hypothetical protein compare
HMPREF1058_RS06180 -3.3 -5.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS16440 -3.3 -2.3 endonuclease MutS2 compare
HMPREF1058_RS15885 -3.3 -7.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS15075 -3.3 -9.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS08830 -3.2 -6.9 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS15660 -3.2 -10.3 galactokinase compare
HMPREF1058_RS07195 -3.2 -3.2 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS08640 -3.2 -3.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS01570 -3.2 -5.7 ABC transporter substrate-binding protein compare
HMPREF1058_RS07170 -3.2 -8.4 tryptophan synthase subunit beta compare
HMPREF1058_RS01545 -3.2 -3.7 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS01275 -3.1 -6.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS02220 -3.1 -3.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS14565 -3.1 -11.9 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS01550 -3.1 -6.9 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS15915 -3.1 -3.9 OmpH family outer membrane protein compare
HMPREF1058_RS14610 -3.1 -14.0 adenylosuccinate synthase compare
HMPREF1058_RS00560 -3.1 -3.9 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS16820 -3.1 -11.0 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14720 -3.1 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS09585 -3.0 -15.9 argininosuccinate lyase compare
HMPREF1058_RS07190 -3.0 -7.2 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS00700 -3.0 -11.7 DUF4831 family protein compare
HMPREF1058_RS03980 -3.0 -1.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS14550 -3.0 -11.1 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07200 -3.0 -7.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS16510 -2.9 -3.3 methylmalonyl-CoA epimerase compare
HMPREF1058_RS15665 -2.9 -7.5 MFS transporter compare
HMPREF1058_RS06320 -2.9 -6.2 electron transport complex subunit RsxA compare
HMPREF1058_RS14200 -2.9 -14.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS14790 -2.9 -8.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08855 -2.9 -9.9 arginine repressor compare
HMPREF1058_RS12575 -2.9 -16.7 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS16260 -2.9 -6.3 hotdog fold thioesterase compare
HMPREF1058_RS08840 -2.9 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS01590 -2.9 -9.9 glucuronate isomerase compare
HMPREF1058_RS16750 -2.8 -2.0 shikimate dehydrogenase compare
HMPREF1058_RS14725 -2.8 -10.1 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS01690 -2.8 -6.8 sugar kinase compare
HMPREF1058_RS10910 -2.8 -14.6 glycosyltransferase family 39 protein compare
HMPREF1058_RS07185 -2.8 -7.2 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS16815 -2.8 -11.2 dihydroxy-acid dehydratase compare
HMPREF1058_RS14545 -2.8 -8.1 2-isopropylmalate synthase compare
HMPREF1058_RS08875 -2.8 -9.6 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS11380 -2.8 -6.5 DUF4271 domain-containing protein compare
HMPREF1058_RS01280 -2.8 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS10900 -2.7 -9.7 glycosyltransferase compare
HMPREF1058_RS13730 -2.7 -5.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS16505 -2.7 -6.6 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS11490 -2.7 -4.6 redox-regulated ATPase YchF compare
HMPREF1058_RS01395 -2.7 -5.2 cobyric acid synthase compare
HMPREF1058_RS14560 -2.7 -9.3 2-isopropylmalate synthase compare
HMPREF1058_RS09185 -2.7 -3.8 DUF4252 domain-containing protein compare
HMPREF1058_RS10835 -2.7 -6.9 UDP-galactopyranose mutase compare
HMPREF1058_RS03970 -2.7 -1.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS06335 -2.7 -7.3 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS16500 -2.7 -4.4 OadG family protein compare
HMPREF1058_RS01405 -2.7 -5.7 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS14730 -2.7 -8.4 threonine synthase compare
HMPREF1058_RS14785 -2.6 -7.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS07175 -2.6 -9.1 anthranilate synthase component I family protein compare
HMPREF1058_RS17205 -2.6 -1.8 DUF4199 domain-containing protein compare
HMPREF1058_RS14770 -2.6 -6.2 prephenate dehydrogenase compare
HMPREF1058_RS15880 -2.6 -9.0 histidinol-phosphate transaminase compare
HMPREF1058_RS01685 -2.6 -3.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS14490 -2.6 -11.5 S9 family peptidase compare
HMPREF1058_RS18050 -2.6 -2.1 DUF4492 domain-containing protein compare
HMPREF1058_RS14830 -2.6 -2.1 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS09750 -2.6 -5.3 glycosyltransferase compare
HMPREF1058_RS10995 -2.6 -10.0 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS03085 -2.6 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS10710 -2.6 -10.9 DUF3108 domain-containing protein compare
HMPREF1058_RS14795 -2.6 -4.9 prephenate dehydratase compare
HMPREF1058_RS11930 -2.5 -3.8 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS19090 -2.5 -0.7 tRNA-Phe compare
HMPREF1058_RS16760 -2.5 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS00590 -2.5 -3.7 hypothetical protein compare
HMPREF1058_RS19100 -2.5 -4.9 hypothetical protein compare
HMPREF1058_RS01475 -2.5 -2.1 hypothetical protein compare
HMPREF1058_RS04375 -2.5 -6.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS04300 -2.5 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS02170 -2.4 -7.8 hypothetical protein compare
HMPREF1058_RS09685 -2.4 -9.9 tetratricopeptide repeat protein compare
HMPREF1058_RS08645 -2.4 -9.8 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS18940 -2.4 -1.6 hypothetical protein compare
HMPREF1058_RS15395 -2.4 -2.7 dihydroorotase compare
HMPREF1058_RS14505 -2.4 -4.0 mechanosensitive ion channel compare
HMPREF1058_RS16835 -2.4 -8.3 ketol-acid reductoisomerase compare
HMPREF1058_RS04025 -2.4 -5.8 hypothetical protein compare
HMPREF1058_RS13515 -2.4 -13.4 MFS transporter compare
HMPREF1058_RS05145 -2.4 -6.1 ATP-binding protein compare
HMPREF1058_RS14555 -2.4 -2.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS01745 -2.4 -3.9 PorT family protein compare
HMPREF1058_RS10850 -2.3 -10.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS09675 -2.3 -4.0 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS17965 -2.3 -1.3 DUF452 family protein compare
HMPREF1058_RS00595 -2.3 -3.1 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS07955 -2.3 -12.4 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS18205 -2.3 -3.1 ferrous iron transport protein B compare
HMPREF1058_RS07040 -2.3 -10.7 tetratricopeptide repeat protein compare
HMPREF1058_RS16490 -2.3 -7.6 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS09180 -2.2 -5.1 hypothetical protein compare
HMPREF1058_RS14285 -2.2 -2.9 DUF5056 domain-containing protein compare
HMPREF1058_RS11625 -2.2 -12.7 S41 family peptidase compare
HMPREF1058_RS01540 -2.2 -5.9 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS01560 -2.2 -4.1 ABC transporter ATP-binding protein compare
HMPREF1058_RS17130 -2.2 -1.5 tetratricopeptide repeat protein compare
HMPREF1058_RS06085 -2.2 -10.5 hypothetical protein compare
HMPREF1058_RS08025 -2.2 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10080 -2.2 -13.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS10720 -2.2 -6.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS03800 -2.2 -6.1 serine hydroxymethyltransferase compare
HMPREF1058_RS07245 -2.2 -4.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS05780 -2.2 -7.8 PD40 domain-containing protein compare
HMPREF1058_RS14225 -2.2 -5.0 polyprenyl synthetase family protein compare
HMPREF1058_RS06330 -2.2 -4.2 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS18695 -2.1 -2.1 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS01270 -2.1 -4.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS04045 -2.1 -3.5 tetratricopeptide repeat protein compare
HMPREF1058_RS02410 -2.1 -12.4 methylmalonyl-CoA mutase compare
HMPREF1058_RS18510 -2.0 -1.9 DNA-binding protein compare
HMPREF1058_RS11205 -2.0 -1.5 radical SAM protein compare
HMPREF1058_RS07655 -2.0 -1.6 hypothetical protein compare
HMPREF1058_RS15645 -2.0 -4.2 NUDIX hydrolase compare
HMPREF1058_RS07180 -2.0 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS17815 -2.0 -3.8 MFS transporter compare
HMPREF1058_RS01565 -2.0 -5.4 iron ABC transporter permease compare
HMPREF1058_RS03510 -2.0 -4.4 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS00205 -2.0 -10.0 cation:proton antiporter compare
HMPREF1058_RS09700 -2.0 -3.3 methionine--tRNA ligase compare
HMPREF1058_RS21545 -2.0 -1.2 hypothetical protein compare
HMPREF1058_RS14125 -1.9 -11.4 magnesium transporter compare
HMPREF1058_RS16255 -1.9 -5.7 isochorismate synthase compare
HMPREF1058_RS13970 -1.9 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS16070 -1.9 -4.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04555 -1.9 -2.4 YqaJ viral recombinase family protein compare
HMPREF1058_RS17385 -1.9 -2.0 DUF4248 domain-containing protein compare
HMPREF1058_RS06555 -1.9 -2.0 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS02405 -1.9 -11.0 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS00515 -1.9 -6.4 YicC family protein compare
HMPREF1058_RS06345 -1.9 -4.0 Fe-S cluster domain-containing protein compare
HMPREF1058_RS09000 -1.9 -5.8 FecR domain-containing protein compare
HMPREF1058_RS01970 -1.9 -3.1 hypothetical protein compare
HMPREF1058_RS04035 -1.9 -2.2 hypothetical protein compare
HMPREF1058_RS06310 -1.9 -5.1 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS05140 -1.8 -2.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS01460 -1.8 -1.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS17155 -1.8 -2.2 dCMP deaminase family protein compare
HMPREF1058_RS18660 -1.8 -1.0 hypothetical protein compare
HMPREF1058_RS02800 -1.8 -5.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS02340 -1.8 -6.6 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS01555 -1.8 -3.4 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS17960 -1.8 -7.2 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS01575 -1.8 -5.8 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS10970 -1.8 -7.5 ribonuclease R compare
HMPREF1058_RS13795 -1.8 -7.9 DUF4954 family protein compare
HMPREF1058_RS01385 -1.8 -4.4 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS06460 -1.8 -2.7 hypothetical protein compare
HMPREF1058_RS08835 -1.8 -5.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS10275 -1.8 -7.7 RNA-splicing ligase RtcB compare
HMPREF1058_RS13635 -1.8 -3.4 gliding motility lipoprotein GldH compare
HMPREF1058_RS16495 -1.8 -2.0 biotin/lipoyl-binding protein compare
HMPREF1058_RS08295 -1.8 -5.2 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS01880 -1.7 -1.8 hypothetical protein compare
HMPREF1058_RS10840 -1.7 -1.7 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Galactan from Potato in Phocaeicola vulgatus CL09T03C04

For carbon source Galactan from Potato across organisms