Experiment set13S12 for Phocaeicola vulgatus CL09T03C04

Compare to:

Galactan from Potato 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS02150 +2.9 18.1 DUF3440 domain-containing protein compare
HMPREF1058_RS02155 +2.8 12.4 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS03130 +2.5 5.1 DUF177 domain-containing protein compare
HMPREF1058_RS06255 +2.5 10.4 hypothetical protein compare
HMPREF1058_RS02145 +2.4 7.4 hypothetical protein compare
HMPREF1058_RS21520 +2.4 3.5 hypothetical protein compare
HMPREF1058_RS10765 +2.3 12.7 ribonuclease III compare
HMPREF1058_RS0119830 +2.1 2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06260 +2.1 8.7 DUF3943 domain-containing protein compare
HMPREF1058_RS07620 +2.1 14.7 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS11825 +2.1 7.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01210 +2.0 12.3 endopeptidase La compare
HMPREF1058_RS06035 +2.0 6.4 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS10160 +1.7 5.1 hypothetical protein compare
HMPREF1058_RS05300 +1.7 4.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16245 +1.7 5.6 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS14300 +1.7 8.3 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS15060 +1.7 9.3 outer membrane beta-barrel protein compare
HMPREF1058_RS19025 +1.7 1.9 hypothetical protein compare
HMPREF1058_RS07310 +1.6 8.5 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS03450 +1.6 3.7 hypothetical protein compare
HMPREF1058_RS03505 +1.6 4.7 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS03630 +1.5 4.3 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS15740 +1.5 3.7 hypothetical protein compare
HMPREF1058_RS06510 +1.5 5.9 ornithine cyclodeaminase compare
HMPREF1058_RS11880 +1.5 11.7 hypothetical protein compare
HMPREF1058_RS06945 +1.5 2.3 tRNA-Thr compare
HMPREF1058_RS04115 +1.5 2.2 CinA family protein compare
HMPREF1058_RS16630 +1.4 5.4 DMP19 family protein compare
HMPREF1058_RS03430 +1.4 1.2 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS21050 +1.4 2.1 transposase compare
HMPREF1058_RS06625 +1.3 4.1 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS14020 +1.3 7.5 cardiolipin synthase compare
HMPREF1058_RS05520 +1.3 1.0 DUF4357 domain-containing protein compare
HMPREF1058_RS03245 +1.3 2.5 thiamine phosphate synthase compare
HMPREF1058_RS07920 +1.3 5.8 DUF108 domain-containing protein compare
HMPREF1058_RS21575 +1.3 1.5 mobilization protein compare
HMPREF1058_RS03215 +1.2 6.6 AhpC/TSA family protein compare
HMPREF1058_RS00710 +1.2 5.4 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS16235 +1.2 6.1 AMP-binding protein compare
HMPREF1058_RS14130 +1.2 2.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS16210 +1.2 2.7 hypothetical protein compare
HMPREF1058_RS16830 +1.2 5.0 acyl-ACP thioesterase compare
HMPREF1058_RS15280 +1.2 1.2 tRNA-Ser compare
HMPREF1058_RS10500 +1.2 3.8 HU family DNA-binding protein compare
HMPREF1058_RS17805 +1.2 3.8 HAD family hydrolase compare
HMPREF1058_RS02490 +1.2 1.9 four helix bundle protein compare
HMPREF1058_RS10815 +1.2 5.3 DUF4249 domain-containing protein compare
HMPREF1058_RS10055 +1.1 8.3 translational GTPase TypA compare
HMPREF1058_RS00435 +1.1 5.0 zeta toxin family protein compare
HMPREF1058_RS15330 +1.1 2.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01930 +1.1 3.9 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS10875 +1.1 8.7 glycosyltransferase compare
HMPREF1058_RS06515 +1.1 7.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS01370 +1.1 4.2 hypothetical protein compare
HMPREF1058_RS04530 +1.1 1.0 hypothetical protein compare
HMPREF1058_RS21590 +1.1 1.8 hypothetical protein compare
HMPREF1058_RS03690 +1.1 3.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS20340 +1.1 2.2 DUF3873 family protein compare
HMPREF1058_RS06045 +1.1 5.6 large-conductance mechanosensitive channel protein MscL compare
HMPREF1058_RS09240 +1.1 5.6 type I methionyl aminopeptidase compare
HMPREF1058_RS18465 +1.1 4.3 glycosyltransferase family 4 protein compare
HMPREF1058_RS21715 +1.1 3.1 hypothetical protein compare
HMPREF1058_RS21660 +1.1 1.3 hypothetical protein compare
HMPREF1058_RS09665 +1.1 5.4 class I SAM-dependent methyltransferase compare
HMPREF1058_RS11830 +1.1 8.3 hypothetical protein compare
HMPREF1058_RS00200 +1.1 4.5 tRNA threonylcarbamoyladenosine dehydratase compare
HMPREF1058_RS02480 +1.1 2.5 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS17935 +1.0 5.3 glycosyltransferase compare
HMPREF1058_RS01240 +1.0 5.6 DEAD/DEAH box helicase compare
HMPREF1058_RS15835 +1.0 4.6 radical SAM protein compare
HMPREF1058_RS06520 +1.0 4.3 capsular polysaccharide synthesis protein compare
HMPREF1058_RS13200 +1.0 2.0 hypothetical protein compare
HMPREF1058_RS03615 +1.0 4.4 glycosyltransferase compare
HMPREF1058_RS14065 +1.0 5.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS12200 +1.0 5.0 CvpA family protein compare
HMPREF1058_RS06545 +1.0 5.1 transcriptional regulator compare
HMPREF1058_RS05250 +1.0 1.8 transposase compare
HMPREF1058_RS15310 +1.0 4.5 Mfa1 family fimbria major subunit compare
HMPREF1058_RS07945 +1.0 3.2 DUF4924 family protein compare
HMPREF1058_RS09440 +1.0 2.5 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS16675 +1.0 3.9 DUF1282 family protein compare
HMPREF1058_RS12810 +1.0 4.1 VanZ family protein compare
HMPREF1058_RS02785 +1.0 2.5 hypothetical protein compare
HMPREF1058_RS04160 +1.0 1.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS03625 +1.0 2.7 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS18570 +1.0 2.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS17940 +1.0 3.7 alpha-amylase compare
HMPREF1058_RS17880 +0.9 1.9 diacylglycerol kinase family protein compare
HMPREF1058_RS08615 +0.9 4.5 RluA family pseudouridine synthase compare
HMPREF1058_RS13065 +0.9 5.3 hypothetical protein compare
HMPREF1058_RS15320 +0.9 2.1 hypothetical protein compare
HMPREF1058_RS01075 +0.9 1.1 site-specific integrase compare
HMPREF1058_RS07960 +0.9 6.4 response regulator compare
HMPREF1058_RS00140 +0.9 4.2 L-rhamnose mutarotase compare
HMPREF1058_RS10805 +0.9 4.4 FecR family protein compare
HMPREF1058_RS10885 +0.9 5.9 glycosyltransferase compare
HMPREF1058_RS06535 +0.9 2.2 hypothetical protein compare
HMPREF1058_RS16240 +0.9 0.9 o-succinylbenzoate synthase compare
HMPREF1058_RS18425 +0.9 4.6 ABC-F family ATP-binding cassette domain-containing protein compare
HMPREF1058_RS09650 +0.9 3.4 pyridoxamine kinase compare
HMPREF1058_RS02510 +0.9 4.1 DUF2027 domain-containing protein compare
HMPREF1058_RS20985 +0.9 1.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS03540 +0.9 1.5 sensor histidine kinase compare
HMPREF1058_RS10455 +0.9 5.8 glycine C-acetyltransferase compare
HMPREF1058_RS06040 +0.9 3.1 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS15550 +0.9 1.3 thioredoxin family protein compare
HMPREF1058_RS15985 +0.9 3.9 META domain-containing protein compare
HMPREF1058_RS07090 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS16170 +0.8 3.8 glycosyltransferase compare
HMPREF1058_RS07650 +0.8 3.0 MarR family transcriptional regulator compare
HMPREF1058_RS17070 +0.8 4.9 ribokinase compare
HMPREF1058_RS05890 +0.8 4.7 class I SAM-dependent rRNA methyltransferase compare
HMPREF1058_RS04545 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS07370 +0.8 5.2 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS16955 +0.8 3.0 cold shock domain-containing protein compare
HMPREF1058_RS13060 +0.8 2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03500 +0.8 2.6 DEAD/DEAH box helicase compare
HMPREF1058_RS03300 +0.8 3.6 superoxide dismutase compare
HMPREF1058_RS05660 +0.8 1.2 hypothetical protein compare
HMPREF1058_RS01725 +0.8 3.0 peptide MFS transporter compare
HMPREF1058_RS01250 +0.8 3.7 DUF4738 domain-containing protein compare
HMPREF1058_RS04600 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS02930 +0.8 3.6 OmpA family protein compare
HMPREF1058_RS12035 +0.8 3.5 phosphate butyryltransferase compare
HMPREF1058_RS0119785 +0.8 4.3 hypothetical protein compare
HMPREF1058_RS07290 +0.8 2.9 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS09445 +0.8 0.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS18415 +0.8 2.0 VOC family protein compare
HMPREF1058_RS06430 +0.8 1.4 C-GCAxxG-C-C family protein compare
HMPREF1058_RS18810 +0.8 2.4 phosphohydrolase compare
HMPREF1058_RS07230 +0.8 2.5 single-stranded DNA-binding protein compare
HMPREF1058_RS03485 +0.8 1.8 RloB domain-containing protein compare
HMPREF1058_RS03715 +0.8 3.4 RluA family pseudouridine synthase compare
HMPREF1058_RS02855 +0.8 4.0 DEAD/DEAH box helicase compare
HMPREF1058_RS17100 +0.8 2.8 exodeoxyribonuclease III compare
HMPREF1058_RS04645 +0.8 4.4 type II pantothenate kinase compare
HMPREF1058_RS05745 +0.8 2.4 site-specific integrase compare
HMPREF1058_RS03555 +0.8 1.8 glutathione peroxidase compare
HMPREF1058_RS16515 +0.8 2.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS10200 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS13940 +0.8 3.5 hypothetical protein compare
HMPREF1058_RS0119510 +0.8 2.8 hypothetical protein compare
HMPREF1058_RS06765 +0.8 3.3 glycosyltransferase family 1 protein compare
HMPREF1058_RS11485 +0.8 3.2 ketopantoate reductase family protein compare
HMPREF1058_RS07300 +0.8 2.9 MFS transporter compare
HMPREF1058_RS15045 +0.8 5.4 family 20 glycosylhydrolase compare
HMPREF1058_RS09370 +0.8 3.2 DUF3467 domain-containing protein compare
HMPREF1058_RS12290 +0.8 3.5 DUF3109 family protein compare
HMPREF1058_RS13140 +0.8 2.9 sugar transferase compare
HMPREF1058_RS01230 +0.7 3.6 redoxin domain-containing protein compare
HMPREF1058_RS05255 +0.7 2.7 hypothetical protein compare
HMPREF1058_RS14050 +0.7 3.5 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS11840 +0.7 5.6 hypothetical protein compare
HMPREF1058_RS10100 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS02615 +0.7 2.0 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
HMPREF1058_RS10090 +0.7 6.3 phage integrase SAM-like domain-containing protein compare
HMPREF1058_RS09860 +0.7 1.3 DUF3408 domain-containing protein compare
HMPREF1058_RS05825 +0.7 3.2 thiamine diphosphokinase compare
HMPREF1058_RS02495 +0.7 3.1 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS04010 +0.7 4.2 molecular chaperone HtpG compare
HMPREF1058_RS07630 +0.7 3.3 hypothetical protein compare
HMPREF1058_RS07590 +0.7 4.9 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
HMPREF1058_RS04510 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS02970 +0.7 2.2 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS08500 +0.7 1.0 CidA/LrgA family protein compare
HMPREF1058_RS20480 +0.7 2.7 site-specific integrase compare
HMPREF1058_RS08940 +0.7 2.7 RNA polymerase sigma-70 factor compare
HMPREF1058_RS18560 +0.7 1.6 recombination protein RecR compare
HMPREF1058_RS09205 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS03770 +0.7 3.2 RNA polymerase sigma factor compare
HMPREF1058_RS05415 +0.7 1.6 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS19060 +0.7 2.7 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS07485 +0.7 1.4 PqqD family protein compare
HMPREF1058_RS12805 +0.7 2.2 RNA polymerase sigma factor compare
HMPREF1058_RS05695 +0.7 1.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS18675 +0.7 1.5 ATP synthase F0 subunit C compare
HMPREF1058_RS09715 +0.7 3.5 hypothetical protein compare
HMPREF1058_RS04380 +0.7 3.0 DUF4251 domain-containing protein compare
HMPREF1058_RS06420 +0.7 2.1 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS13735 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS18750 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS01605 +0.7 2.4 MBL fold metallo-hydrolase compare
HMPREF1058_RS01615 +0.7 0.6 tRNA-Lys compare
HMPREF1058_RS07080 +0.7 1.2 YtxH domain-containing protein compare
HMPREF1058_RS16350 +0.7 1.8 transposase compare
HMPREF1058_RS05350 +0.7 2.2 Fic family protein compare
HMPREF1058_RS06240 +0.7 2.8 YggS family pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS10785 +0.7 4.2 RNA polymerase sigma-70 factor compare
HMPREF1058_RS01875 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS02125 +0.7 2.7 PorT family protein compare
HMPREF1058_RS05965 +0.7 2.4 hypothetical protein compare
HMPREF1058_RS06925 +0.7 1.5 glutamate synthase subunit beta compare
HMPREF1058_RS10810 +0.7 3.1 TonB-dependent receptor compare
HMPREF1058_RS03390 +0.7 1.5 GNAT family N-acetyltransferase compare
HMPREF1058_RS09060 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS04730 +0.7 2.6 YbbR-like domain-containing protein compare
HMPREF1058_RS06700 +0.7 2.3 glycosyltransferase family 2 protein compare
HMPREF1058_RS06480 +0.7 2.5 putative toxin-antitoxin system toxin component, PIN family compare
HMPREF1058_RS07165 +0.7 2.1 YtxH domain-containing protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Galactan from Potato in Phocaeicola vulgatus CL09T03C04

For carbon source Galactan from Potato across organisms