Experiment set13S12 for Phocaeicola vulgatus CL09T03C04
Galactan from Potato 2.5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Galactan from Potato (2.5 mg/ml)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 6/18/25
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 7 genes in this experiment
For carbon source Galactan from Potato in Phocaeicola vulgatus CL09T03C04
For carbon source Galactan from Potato across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Galacturonate and D-Glucuronate Utilization | 1 |
| Iron acquisition in Vibrio | 1 |
| Ton and Tol transport systems | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 4 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 14 | 1 |