Experiment set13S10 for Phocaeicola vulgatus CL09T03C04

Compare to:

Xylan from corn core 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14270 +3.9 28.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS07675 +3.2 22.4 elongation factor G compare
HMPREF1058_RS12035 +3.1 16.2 phosphate butyryltransferase compare
HMPREF1058_RS09440 +2.8 10.7 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS02480 +2.6 11.4 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS15755 +2.6 16.9 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS02485 +2.5 12.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS16775 +2.5 11.6 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS02495 +2.5 14.0 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS14130 +2.2 8.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS06345 +2.0 4.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS10945 +1.9 14.3 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS04290 +1.7 9.5 DUF1015 domain-containing protein compare
HMPREF1058_RS09990 +1.6 9.5 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS19090 +1.5 1.4 tRNA-Phe compare
HMPREF1058_RS14020 +1.4 9.3 cardiolipin synthase compare
HMPREF1058_RS05790 +1.4 1.9 hypothetical protein compare
HMPREF1058_RS03175 +1.4 4.4 DUF2764 domain-containing protein compare
HMPREF1058_RS16770 +1.4 4.7 hypothetical protein compare
HMPREF1058_RS06260 +1.4 7.7 DUF3943 domain-containing protein compare
HMPREF1058_RS01725 +1.3 6.6 peptide MFS transporter compare
HMPREF1058_RS03200 +1.2 4.3 V-type ATP synthase subunit K compare
HMPREF1058_RS14835 +1.2 5.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS12495 +1.2 9.2 glycine cleavage system protein GcvH compare
HMPREF1058_RS15795 +1.2 7.5 TolC family protein compare
HMPREF1058_RS05300 +1.2 2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS13785 +1.2 9.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS10055 +1.2 9.6 translational GTPase TypA compare
HMPREF1058_RS06340 +1.2 3.4 electron transport complex subunit RsxC compare
HMPREF1058_RS19025 +1.2 1.6 hypothetical protein compare
HMPREF1058_RS14500 +1.1 8.2 FprA family A-type flavoprotein compare
HMPREF1058_RS15375 +1.1 1.7 DUF4369 domain-containing protein compare
HMPREF1058_RS05615 +1.1 1.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS13780 +1.1 9.7 TonB-dependent receptor compare
HMPREF1058_RS02975 +1.1 5.0 hypothetical protein compare
HMPREF1058_RS18235 +1.1 6.2 3'-5' exonuclease compare
HMPREF1058_RS0119830 +1.1 1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06255 +1.1 6.0 hypothetical protein compare
HMPREF1058_RS12705 +1.1 5.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1058_RS07245 +1.1 3.6 Rne/Rng family ribonuclease compare
HMPREF1058_RS12595 +1.1 1.6 hypothetical protein compare
HMPREF1058_RS04685 +1.1 6.1 glycine cleavage system aminomethyltransferase GcvT compare
HMPREF1058_RS03215 +1.1 7.1 AhpC/TSA family protein compare
HMPREF1058_RS14000 +1.1 7.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02140 +1.0 7.4 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS02540 +1.0 3.3 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS07620 +1.0 7.5 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS11215 +1.0 2.0 DUF4294 domain-containing protein compare
HMPREF1058_RS03180 +1.0 5.9 V-type ATP synthase subunit A compare
HMPREF1058_RS05520 +1.0 1.0 DUF4357 domain-containing protein compare
HMPREF1058_RS15915 +1.0 2.8 OmpH family outer membrane protein compare
HMPREF1058_RS11065 +1.0 6.1 dihydrolipoyl dehydrogenase compare
HMPREF1058_RS03770 +1.0 5.6 RNA polymerase sigma factor compare
HMPREF1058_RS20480 +1.0 4.1 site-specific integrase compare
HMPREF1058_RS17170 +1.0 6.0 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS09715 +1.0 5.8 hypothetical protein compare
HMPREF1058_RS14220 +1.0 2.7 energy transducer TonB compare
HMPREF1058_RS18775 +0.9 6.4 S9 family peptidase compare
HMPREF1058_RS04530 +0.9 1.0 hypothetical protein compare
HMPREF1058_RS15380 +0.9 6.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS04580 +0.9 1.7 hypothetical protein compare
HMPREF1058_RS05940 +0.9 3.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS10825 +0.9 4.9 glycosyltransferase family 9 protein compare
HMPREF1058_RS06720 +0.9 3.6 glycosyltransferase compare
HMPREF1058_RS03195 +0.9 5.2 V-type ATP synthase subunit I compare
HMPREF1058_RS12200 +0.9 3.9 CvpA family protein compare
HMPREF1058_RS06325 +0.9 3.1 electron transport complex subunit E compare
HMPREF1058_RS04130 +0.9 1.9 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS15055 +0.9 4.5 RNA polymerase sigma-70 factor compare
HMPREF1058_RS11005 +0.9 3.5 DedA family protein compare
HMPREF1058_RS06945 +0.9 1.5 tRNA-Thr compare
HMPREF1058_RS13745 +0.9 6.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS07670 +0.9 2.2 HAMP domain-containing histidine kinase compare
HMPREF1058_RS12885 +0.9 4.8 purine-nucleoside phosphorylase compare
HMPREF1058_RS14285 +0.9 3.2 DUF5056 domain-containing protein compare
HMPREF1058_RS19185 +0.8 2.3 hypothetical protein compare
HMPREF1058_RS17910 +0.8 3.0 PadR family transcriptional regulator compare
HMPREF1058_RS17655 +0.8 3.4 AbgT family transporter compare
HMPREF1058_RS18220 +0.8 3.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HMPREF1058_RS21525 +0.8 2.7 hypothetical protein compare
HMPREF1058_RS16245 +0.8 2.0 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS18795 +0.8 3.6 DUF3298 and DUF4163 domain-containing protein compare
HMPREF1058_RS11310 +0.8 3.2 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS07920 +0.8 3.5 DUF108 domain-containing protein compare
HMPREF1058_RS17930 +0.8 4.1 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS16515 +0.8 3.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS05955 +0.8 4.0 hypothetical protein compare
HMPREF1058_RS16715 +0.8 2.1 hypothetical protein compare
HMPREF1058_RS03190 +0.8 2.2 V-type ATP synthase subunit D compare
HMPREF1058_RS04025 +0.7 4.0 hypothetical protein compare
HMPREF1058_RS09740 +0.7 4.7 glycosyltransferase family 4 protein compare
HMPREF1058_RS05415 +0.7 1.9 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS02535 +0.7 4.5 imidazolonepropionase compare
HMPREF1058_RS14485 +0.7 4.1 lipoyl synthase compare
HMPREF1058_RS03185 +0.7 4.7 V-type ATP synthase subunit B compare
HMPREF1058_RS13305 +0.7 1.6 NADH-quinone oxidoreductase subunit NuoK compare
HMPREF1058_RS06710 +0.7 3.4 DUF4422 domain-containing protein compare
HMPREF1058_RS18790 +0.7 3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
HMPREF1058_RS10010 +0.7 1.2 hypothetical protein compare
HMPREF1058_RS20490 +0.7 2.9 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS01615 +0.7 0.9 tRNA-Lys compare
HMPREF1058_RS07010 +0.7 4.4 endolytic transglycosylase MltG compare
HMPREF1058_RS07130 +0.7 3.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS00430 +0.7 3.0 DUF4488 domain-containing protein compare
HMPREF1058_RS05950 +0.7 2.8 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS04825 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS04750 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS06740 +0.7 4.0 glycosyltransferase compare
HMPREF1058_RS00245 +0.7 3.0 DUF5110 domain-containing protein compare
HMPREF1058_RS13770 +0.7 5.5 TonB-dependent receptor compare
HMPREF1058_RS04430 +0.7 4.0 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS03170 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS08520 +0.7 2.2 DUF59 domain-containing protein compare
HMPREF1058_RS05765 +0.7 3.8 nucleoside phosphorylase compare
HMPREF1058_RS18780 +0.7 4.7 aminomethyl-transferring glycine dehydrogenase compare
HMPREF1058_RS19140 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS20370 +0.7 3.8 lipoyl(octanoyl) transferase LipB compare
HMPREF1058_RS20840 +0.7 3.5 NVEALA domain-containing protein compare
HMPREF1058_RS12785 +0.7 4.7 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS04160 +0.7 1.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS18560 +0.6 1.9 recombination protein RecR compare
HMPREF1058_RS10455 +0.6 4.1 glycine C-acetyltransferase compare
HMPREF1058_RS21405 +0.6 1.0 hypothetical protein compare
HMPREF1058_RS14940 +0.6 3.7 OmpA family protein compare
HMPREF1058_RS09980 +0.6 0.8 PcfK-like family protein compare
HMPREF1058_RS13750 +0.6 5.3 TonB-dependent receptor compare
HMPREF1058_RS05430 +0.6 1.7 ferritin compare
HMPREF1058_RS01860 +0.6 2.4 hypothetical protein compare
HMPREF1058_RS03430 +0.6 0.9 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS18410 +0.6 3.3 MBL fold metallo-hydrolase compare
HMPREF1058_RS15045 +0.6 5.0 family 20 glycosylhydrolase compare
HMPREF1058_RS14160 +0.6 1.4 hypothetical protein compare
HMPREF1058_RS10110 +0.6 1.9 hypothetical protein compare
HMPREF1058_RS12880 +0.6 3.5 thiamine-phosphate kinase compare
HMPREF1058_RS10500 +0.6 1.5 HU family DNA-binding protein compare
HMPREF1058_RS00695 +0.6 4.6 MFS transporter compare
HMPREF1058_RS10815 +0.6 3.8 DUF4249 domain-containing protein compare
HMPREF1058_RS17015 +0.6 2.4 SpoIID/LytB domain-containing protein compare
HMPREF1058_RS03455 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS18570 +0.6 1.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS02475 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS03870 +0.6 1.9 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS13640 +0.6 3.1 hypothetical protein compare
HMPREF1058_RS14845 +0.6 4.1 aminopeptidase P family protein compare
HMPREF1058_RS03050 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS17670 +0.6 2.3 hypothetical protein compare
HMPREF1058_RS21575 +0.6 0.8 mobilization protein compare
HMPREF1058_RS15910 +0.6 2.3 thioredoxin compare
HMPREF1058_RS00105 +0.6 2.7 rhamnogalacturonan acetylesterase compare
HMPREF1058_RS18090 +0.6 3.2 hemerythrin domain-containing protein compare
HMPREF1058_RS05925 +0.6 0.8 DUF5024 domain-containing protein compare
HMPREF1058_RS03130 +0.6 1.1 DUF177 domain-containing protein compare
HMPREF1058_RS17385 +0.6 1.2 DUF4248 domain-containing protein compare
HMPREF1058_RS17980 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS03655 +0.6 1.5 ABC transporter ATP-binding protein compare
HMPREF1058_RS18155 +0.6 1.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02525 +0.6 2.4 glutamate formimidoyltransferase compare
HMPREF1058_RS21720 +0.6 1.5 ribonucleoside-triphosphate reductase compare
HMPREF1058_RS06320 +0.6 2.2 electron transport complex subunit RsxA compare
HMPREF1058_RS16995 +0.5 2.5 DUF4136 domain-containing protein compare
HMPREF1058_RS20745 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS06950 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS03585 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS02785 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS04730 +0.5 2.0 YbbR-like domain-containing protein compare
HMPREF1058_RS15495 +0.5 4.1 sodium-translocating pyrophosphatase compare
HMPREF1058_RS09955 +0.5 0.8 hypothetical protein compare
HMPREF1058_RS07155 +0.5 2.4 DUF4891 domain-containing protein compare
HMPREF1058_RS12810 +0.5 3.5 VanZ family protein compare
HMPREF1058_RS07370 +0.5 3.4 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS19210 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS10290 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS06480 +0.5 2.0 putative toxin-antitoxin system toxin component, PIN family compare
HMPREF1058_RS14050 +0.5 3.0 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS01605 +0.5 2.7 MBL fold metallo-hydrolase compare
HMPREF1058_RS12800 +0.5 3.9 TonB-dependent receptor compare
HMPREF1058_RS02530 +0.5 1.8 GxxExxY protein compare
HMPREF1058_RS10875 +0.5 3.7 glycosyltransferase compare
HMPREF1058_RS12170 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS05200 +0.5 2.0 MaoC family dehydratase compare
HMPREF1058_RS17865 +0.5 2.5 hypothetical protein compare
HMPREF1058_RS14085 +0.5 2.7 5'/3'-nucleotidase SurE compare
HMPREF1058_RS07465 +0.5 1.0 S26 family signal peptidase compare
HMPREF1058_RS07535 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS16350 +0.5 2.0 transposase compare
HMPREF1058_RS00465 +0.5 1.9 translation initiation factor compare
HMPREF1058_RS12290 +0.5 2.6 DUF3109 family protein compare
HMPREF1058_RS06730 +0.5 2.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS02875 +0.5 2.7 cysteine synthase A compare
HMPREF1058_RS05635 +0.5 2.0 FecR domain-containing protein compare
HMPREF1058_RS19200 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS10175 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS21435 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS17860 +0.5 2.4 oligopeptide transporter, OPT family compare
HMPREF1058_RS06735 +0.5 1.8 ABC transporter permease compare
HMPREF1058_RS18785 +0.5 2.3 MBL fold metallo-hydrolase compare
HMPREF1058_RS16405 +0.5 1.9 PepSY-like domain-containing protein compare
HMPREF1058_RS15930 +0.5 2.1 endonuclease compare
HMPREF1058_RS17535 +0.5 0.8 IS21-like element helper ATPase IstB compare
HMPREF1058_RS01400 +0.5 1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Xylan from corn core across organisms