Experiment set13IT095 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS28485 -5.4 -1.4 GntR family transcriptional regulator compare
BPHYT_RS17670 -5.1 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS07325 -4.5 -1.2 GntR family transcriptional regulator compare
BPHYT_RS12615 -4.5 -1.7 dihydrodipicolinate synthase compare
BPHYT_RS29620 -4.5 -1.2 hypothetical protein compare
BPHYT_RS28535 -4.4 -1.1 response regulator receiver compare
BPHYT_RS17700 -4.3 -6.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04335 -4.2 -1.8 membrane protein compare
BPHYT_RS02610 -4.1 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17690 -4.1 -9.0 imidazole glycerol phosphate synthase compare
BPHYT_RS17680 -4.0 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09860 -3.9 -1.0 pilus assembly protein PilP compare
BPHYT_RS04455 -3.9 -1.4 glycosyl transferase compare
BPHYT_RS17675 -3.7 -2.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS13605 -3.7 -1.0 tRNA-Pro compare
BPHYT_RS17685 -3.6 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06610 -3.6 -1.3 triosephosphate isomerase compare
BPHYT_RS03480 -3.5 -7.2 ferritin compare
BPHYT_RS03645 -3.4 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS01625 -3.3 -2.8 chemotaxis protein CheY compare
BPHYT_RS14060 -3.2 -1.7 peptidase M23 compare
BPHYT_RS14755 -3.1 -2.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS12845 -3.1 -11.9 ATPase compare
BPHYT_RS14845 -3.1 -1.8 cysteine synthase compare
BPHYT_RS30140 -3.1 -1.5 3-methylitaconate isomerase compare
BPHYT_RS12990 -2.9 -1.8 iron transporter compare
BPHYT_RS03725 -2.9 -1.3 serine hydroxymethyltransferase compare
BPHYT_RS08850 -2.9 -1.8 transcriptional regulator compare
BPHYT_RS02365 -2.9 -1.0 hypothetical protein compare
BPHYT_RS16245 -2.8 -4.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06985 -2.8 -4.5 fumarate hydratase compare
BPHYT_RS28830 -2.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS20095 -2.7 -0.7 transcriptional regulator compare
BPHYT_RS08280 -2.7 -2.9 acyl dehydratase compare
BPHYT_RS36220 -2.6 -1.0 hypothetical protein compare
BPHYT_RS16250 -2.6 -1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS12550 -2.6 -0.9 GTP-binding protein HflX compare
BPHYT_RS17445 -2.5 -3.1 GTP-binding protein YchF compare
BPHYT_RS29250 -2.5 -2.7 dihydrodipicolinate synthase compare
BPHYT_RS15415 -2.5 -8.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS10540 -2.4 -1.4 secretion protein compare
BPHYT_RS22145 -2.3 -1.7 phosphoesterase compare
BPHYT_RS33850 -2.3 -1.4 sporulation protein compare
BPHYT_RS06685 -2.3 -1.1 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17520 -2.3 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS15620 -2.2 -2.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS13645 -2.2 -9.6 threonine--tRNA ligase compare
BPHYT_RS16345 -2.2 -3.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS35275 -2.2 -1.2 acetyltransferase compare
BPHYT_RS31905 -2.2 -1.6 hypothetical protein compare
BPHYT_RS29920 -2.2 -1.1 hypothetical protein compare
BPHYT_RS36275 -2.1 -1.3 hypothetical protein compare
BPHYT_RS08135 -2.1 -1.1 hypothetical protein compare
BPHYT_RS12985 -2.1 -1.4 amino acid acetyltransferase compare
BPHYT_RS17530 -2.1 -2.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS07220 -2.1 -1.7 GCN5 family acetyltransferase compare
BPHYT_RS01620 -2.0 -7.2 sensor histidine kinase compare
BPHYT_RS17525 -2.0 -1.9 glutaredoxin compare
BPHYT_RS18320 -2.0 -3.2 orotate phosphoribosyltransferase compare
BPHYT_RS28040 -2.0 -2.5 acyl-CoA dehydrogenase compare
BPHYT_RS24315 -2.0 -1.2 phosphoribosyltransferase compare
BPHYT_RS06350 -2.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS17945 -2.0 -1.3 cytochrome C biogenesis protein compare
BPHYT_RS30490 -2.0 -0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS15305 -2.0 -7.5 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS12530 -2.0 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS32395 -2.0 -1.0 hypothetical protein compare
BPHYT_RS02975 -1.9 -2.4 membrane protein compare
BPHYT_RS16270 -1.9 -2.8 phosphoglycerate kinase compare
BPHYT_RS33135 -1.9 -1.5 LysR family transcriptional regulator compare
BPHYT_RS26080 -1.9 -1.2 ABC transporter ATPase compare
BPHYT_RS04255 -1.9 -1.9 diadenosine tetraphosphatase compare
BPHYT_RS36000 -1.9 -1.1 hypothetical protein compare
BPHYT_RS36435 -1.8 -1.6 hypothetical protein compare
BPHYT_RS34410 -1.8 -1.2 hypothetical protein compare
BPHYT_RS24665 -1.8 -1.9 ABC transporter permease compare
BPHYT_RS17715 -1.8 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33630 -1.8 -1.5 chromate transporter compare
BPHYT_RS12465 -1.8 -1.5 inositol monophosphatase compare
BPHYT_RS16905 -1.8 -2.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS25870 -1.8 -0.8 type III secretion system ATPase compare
BPHYT_RS06175 -1.8 -2.3 LPS biosynthesis compare
BPHYT_RS03755 -1.8 -1.7 pilus assembly protein PilE compare
BPHYT_RS11795 -1.8 -0.9 membrane protein compare
BPHYT_RS10740 -1.7 -1.0 LuxR family transcriptional regulator compare
BPHYT_RS06405 -1.7 -3.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS15890 -1.7 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS21850 -1.7 -3.1 pyrimidine reductase compare
BPHYT_RS12840 -1.7 -2.4 pyruvate dehydrogenase compare
BPHYT_RS17075 -1.7 -1.9 ABC transporter permease compare
BPHYT_RS32250 -1.7 -2.4 membrane protein compare
BPHYT_RS08385 -1.7 -1.0 secretion protein compare
BPHYT_RS03330 -1.7 -1.4 hypothetical protein compare
BPHYT_RS21810 -1.7 -3.1 histidine kinase compare
BPHYT_RS07165 -1.7 -1.1 peptide ABC transporter permease compare
BPHYT_RS16290 -1.7 -0.7 hypothetical protein compare
BPHYT_RS23910 -1.7 -2.1 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS14190 -1.6 -4.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS24585 -1.6 -1.4 NUDIX hydrolase compare
BPHYT_RS33610 -1.6 -1.0 DNA polymerase I compare
BPHYT_RS27720 -1.6 -1.1 hypothetical protein compare
BPHYT_RS03170 -1.6 -1.4 membrane protein compare
BPHYT_RS03400 -1.6 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS26490 -1.6 -0.8 hypothetical protein compare
BPHYT_RS10830 -1.6 -1.4 carbon monoxide dehydrogenase compare
BPHYT_RS13200 -1.6 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS15320 -1.6 -1.3 hypothetical protein compare
BPHYT_RS26675 -1.6 -1.3 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS26880 -1.6 -1.8 ketosteroid isomerase compare
BPHYT_RS00885 -1.6 -1.9 chemotaxis protein CheY compare
BPHYT_RS15015 -1.6 -1.0 ArsR family transcriptional regulator compare
BPHYT_RS14380 -1.5 -2.9 elongation factor 4 compare
BPHYT_RS08410 -1.5 -0.8 dehydrogenase compare
BPHYT_RS02865 -1.5 -1.8 hypothetical protein compare
BPHYT_RS04875 -1.5 -1.8 alpha-ribazole phosphatase compare
BPHYT_RS32260 -1.5 -1.1 hypothetical protein compare
BPHYT_RS28930 -1.5 -0.8 chromosome partitioning protein ParA compare
BPHYT_RS07935 -1.5 -1.4 Rrf2 family transcriptional regulator compare
BPHYT_RS20000 -1.5 -1.7 serine/threonine protein kinase compare
BPHYT_RS33920 -1.5 -3.1 type II citrate synthase compare
BPHYT_RS21595 -1.5 -1.7 TetR family transcriptional regulator compare
BPHYT_RS05155 -1.5 -3.2 acetyltransferase GCN5 compare
BPHYT_RS13660 -1.5 -2.8 aminoacrylate peracid reductase compare
BPHYT_RS30415 -1.5 -1.3 AraC family transcriptional regulator compare
BPHYT_RS17920 -1.5 -1.0 protein CyaY compare
BPHYT_RS02540 -1.5 -1.1 hypothetical protein compare
BPHYT_RS32055 -1.5 -1.4 hypothetical protein compare
BPHYT_RS33170 -1.5 -1.2 acetyltransferase compare
BPHYT_RS19260 -1.5 -0.7 hypothetical protein compare
BPHYT_RS19890 -1.5 -1.0 hypothetical protein compare
BPHYT_RS34775 -1.5 -2.1 diguanylate cyclase compare
BPHYT_RS00815 -1.5 -0.9 hypothetical protein compare
BPHYT_RS36385 -1.4 -0.5 TetR family transcriptional regulator compare
BPHYT_RS08125 -1.4 -5.3 ATPase compare
BPHYT_RS10570 -1.4 -1.3 LysR family transcriptional regulator compare
BPHYT_RS32860 -1.4 -0.8 hypothetical protein compare
BPHYT_RS03640 -1.4 -1.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03405 -1.4 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS01340 -1.4 -1.5 ChrB domain-containing protein compare
BPHYT_RS16710 -1.4 -0.7 LysR family transcriptional regulator compare
BPHYT_RS10645 -1.4 -0.8 cyanate hydratase compare
BPHYT_RS16835 -1.4 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS34805 -1.4 -4.3 ABC transporter compare
BPHYT_RS18835 -1.4 -1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS22190 -1.4 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS28030 -1.4 -1.2 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS08960 -1.4 -1.1 threonine synthase compare
BPHYT_RS13450 -1.4 -1.0 GntR family transcriptional regulator compare
BPHYT_RS12725 -1.4 -6.2 regulator compare
BPHYT_RS24095 -1.4 -1.5 membrane protein compare
BPHYT_RS11685 -1.3 -0.8 phasin family protein compare
BPHYT_RS11310 -1.3 -0.9 LysR family transcriptional regulator compare
BPHYT_RS29720 -1.3 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS00380 -1.3 -2.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS26440 -1.3 -3.3 NADH-flavin oxidoreductase / NADH oxidase compare
BPHYT_RS29745 -1.3 -2.5 phosphonopyruvate decarboxylase compare
BPHYT_RS23675 -1.3 -1.3 lysine transporter LysE compare
BPHYT_RS05515 -1.3 -1.7 hypothetical protein compare
BPHYT_RS23460 -1.3 -0.6 AraC family transcriptional regulator compare
BPHYT_RS26775 -1.3 -0.9 chemotaxis protein CheB compare
BPHYT_RS24335 -1.3 -3.3 toxin HipA compare
BPHYT_RS17095 -1.3 -1.4 proline--tRNA ligase compare
BPHYT_RS33885 -1.3 -5.5 tRNA pseudouridine synthase A compare
BPHYT_RS36460 -1.3 -1.3 hypothetical protein compare
BPHYT_RS30645 -1.3 -1.2 hypothetical protein compare
BPHYT_RS09755 -1.3 -1.0 glycosyl transferase family 1 compare
BPHYT_RS04595 -1.2 -1.2 cytoplasmic protein compare
BPHYT_RS33580 -1.2 -1.7 geranyltranstransferase compare
BPHYT_RS23395 -1.2 -0.7 glycosyl transferase compare
BPHYT_RS30825 -1.2 -1.3 extradiol dioxygenase compare
BPHYT_RS12280 -1.2 -0.8 RNA helicase compare
BPHYT_RS24755 -1.2 -2.3 catalase compare
BPHYT_RS17035 -1.2 -1.9 sugar kinase compare
BPHYT_RS03910 -1.2 -2.3 membrane protein compare
BPHYT_RS06105 -1.2 -1.1 hypothetical protein compare
BPHYT_RS04005 -1.2 -1.6 GDP-L-fucose synthase compare
BPHYT_RS23175 -1.2 -1.5 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS27370 -1.2 -1.3 CoA transferase compare
BPHYT_RS16255 -1.2 -2.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS02530 -1.2 -3.5 hypothetical protein compare
BPHYT_RS04720 -1.2 -3.4 transcriptional regulator compare
BPHYT_RS11050 -1.2 -1.0 molecular chaperone compare
BPHYT_RS03580 -1.2 -1.4 RNA-binding protein S4 compare
BPHYT_RS14210 -1.2 -1.6 hydroxyacylglutathione hydrolase compare
BPHYT_RS27175 -1.2 -0.5 DNA-binding protein compare
BPHYT_RS20840 -1.2 -0.6 beta-lactamase compare
BPHYT_RS00980 -1.2 -0.7 GCN5 family acetyltransferase compare
BPHYT_RS06190 -1.2 -2.9 heptosyltransferase compare
BPHYT_RS26185 -1.2 -0.8 thioesterase compare
BPHYT_RS33950 -1.2 -5.2 GntR family transcriptional regulator compare
BPHYT_RS07675 -1.2 -1.5 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS27780 -1.2 -2.9 acetyl-CoA synthetase compare
BPHYT_RS05365 -1.2 -0.7 3-ketoacyl-ACP reductase compare
BPHYT_RS06600 -1.2 -1.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS22750 -1.2 -1.4 Flagellar brake protein YcgR 2 compare
BPHYT_RS22455 -1.2 -0.7 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS14485 -1.2 -1.8 ribonuclease E compare
BPHYT_RS03215 -1.2 -1.0 TetR family transcriptional regulator compare
BPHYT_RS08130 -1.1 -0.7 transposase compare
BPHYT_RS25070 -1.1 -0.9 choline ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms