Experiment set13IT095 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS11745 +2.4 2.7 (2Fe-2S)-binding protein compare
BPHYT_RS02755 +2.0 2.1 cyd operon protein YbgT compare
BPHYT_RS29500 +1.9 2.1 hypothetical protein compare
BPHYT_RS08235 +1.9 1.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS03470 +1.8 7.9 LysR family transcriptional regulator compare
BPHYT_RS35750 +1.7 1.1 hypothetical protein compare
BPHYT_RS29855 +1.7 1.4 protein-tyrosine-phosphatase compare
BPHYT_RS27890 +1.7 1.4 hypothetical protein compare
BPHYT_RS09565 +1.7 2.6 acetyl-CoA acetyltransferase compare
BPHYT_RS06975 +1.6 1.6 glutamate racemase compare
BPHYT_RS11235 +1.6 1.5 hypothetical protein compare
BPHYT_RS26525 +1.6 1.9 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS30775 +1.5 2.7 gluconate 2-dehydrogenase compare
BPHYT_RS08415 +1.5 2.7 hypothetical protein compare
BPHYT_RS28620 +1.5 2.5 enoyl-CoA hydratase compare
BPHYT_RS07835 +1.5 3.0 muconolactone delta-isomerase compare
BPHYT_RS25780 +1.5 1.3 DeoR faimly transcriptional regulator compare
BPHYT_RS07255 +1.5 3.1 4-oxalocrotonate decarboxylase compare
BPHYT_RS06710 +1.5 1.9 hypothetical protein compare
BPHYT_RS02765 +1.5 2.3 cytochrome BD oxidase subunit I compare
BPHYT_RS02760 +1.5 2.9 cytochrome BD oxidase subunit II compare
BPHYT_RS16990 +1.5 3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS32930 +1.4 2.0 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS20905 +1.4 2.2 hypothetical protein compare
BPHYT_RS25335 +1.4 1.4 hypothetical protein compare
BPHYT_RS02595 +1.4 1.3 sulfurtransferase compare
BPHYT_RS03945 +1.4 2.5 hypothetical protein compare
BPHYT_RS22525 +1.4 3.7 dioxygenase compare
BPHYT_RS25980 +1.4 1.5 urea carboxylase compare
BPHYT_RS08405 +1.4 1.7 hypothetical protein compare
BPHYT_RS34655 +1.4 1.2 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS22640 +1.3 2.9 hydroxyproline-2-epimerase compare
BPHYT_RS17240 +1.3 1.2 cell division protein FtsW compare
BPHYT_RS27305 +1.3 1.7 hypothetical protein compare
BPHYT_RS08595 +1.3 1.5 multidrug transporter compare
BPHYT_RS02885 +1.3 5.3 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS03900 +1.3 1.2 phospholipid-binding protein compare
BPHYT_RS19565 +1.3 6.3 gamma-glutamyl:cysteine ligase compare
BPHYT_RS25135 +1.3 2.3 hypothetical protein compare
BPHYT_RS00540 +1.3 2.4 hypothetical protein compare
BPHYT_RS33370 +1.2 1.8 LysR family transcriptional regulator compare
BPHYT_RS02010 +1.2 1.6 copper homeostasis protein CutC compare
BPHYT_RS11890 +1.2 3.2 hypothetical protein compare
BPHYT_RS04115 +1.2 2.0 glycosyhydrolase compare
BPHYT_RS33050 +1.2 2.7 LuxR family transcriptional regulator compare
BPHYT_RS11915 +1.2 1.5 hypothetical protein compare
BPHYT_RS25450 +1.2 1.5 membrane protein compare
BPHYT_RS19925 +1.2 2.3 peptidase C39 compare
BPHYT_RS11945 +1.2 3.4 multidrug transporter compare
BPHYT_RS06915 +1.2 2.5 hypothetical protein compare
BPHYT_RS27570 +1.2 1.4 universal stress protein UspA compare
BPHYT_RS22860 +1.2 1.0 chemotaxis protein CheY compare
BPHYT_RS20180 +1.2 2.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS07145 +1.2 1.5 DNA-binding protein compare
BPHYT_RS23350 +1.2 2.2 NAD-dependent epimerase/dehydratase compare
BPHYT_RS33070 +1.2 1.7 haloacid dehalogenase compare
BPHYT_RS35185 +1.2 2.1 DOPA 4,5-dioxygenase compare
BPHYT_RS09910 +1.1 2.3 tyramine oxidase compare
BPHYT_RS26740 +1.1 1.9 hypothetical protein compare
BPHYT_RS28285 +1.1 1.8 MFS transporter compare
BPHYT_RS20155 +1.1 1.2 hypothetical protein compare
BPHYT_RS10725 +1.1 2.4 polyketide cyclase compare
BPHYT_RS00055 +1.1 2.7 hypothetical protein compare
BPHYT_RS25515 +1.1 2.3 glutathione S-transferase compare
BPHYT_RS21505 +1.1 1.7 amidohydrolase compare
BPHYT_RS17590 +1.1 3.0 hypothetical protein compare
BPHYT_RS30990 +1.1 1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS22300 +1.1 0.8 hypothetical protein compare
BPHYT_RS08825 +1.1 1.4 tartronate semialdehyde reductase compare
BPHYT_RS13040 +1.1 1.2 hypothetical protein compare
BPHYT_RS22500 +1.1 3.0 transcriptional regulator compare
BPHYT_RS10985 +1.1 3.1 MFS transporter compare
BPHYT_RS05425 +1.1 4.6 oxidoreductase compare
BPHYT_RS24140 +1.1 2.8 2,5-dioxovalerate dehydrogenase compare
BPHYT_RS05735 +1.1 3.9 virulence protein E compare
BPHYT_RS30610 +1.1 1.9 major facilitator transporter compare
BPHYT_RS11930 +1.0 1.9 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS20220 +1.0 1.4 antibiotic synthesis protein MbtH compare
BPHYT_RS07690 +1.0 1.5 AraC family transcriptional regulator compare
BPHYT_RS14880 +1.0 1.7 integration host factor subunit beta compare
BPHYT_RS26570 +1.0 0.8 5'-nucleotidase compare
BPHYT_RS25140 +1.0 2.9 hypothetical protein compare
BPHYT_RS28370 +1.0 1.3 peroxidase compare
BPHYT_RS19570 +1.0 6.0 sodium/hydrogen exchanger compare
BPHYT_RS29710 +1.0 1.7 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS05330 +1.0 1.4 phosphohydrolase compare
BPHYT_RS03375 +1.0 1.4 NAD(P) transhydrogenase compare
BPHYT_RS26645 +1.0 3.3 ABC transporter substrate-binding protein compare
BPHYT_RS19905 +1.0 1.6 membrane protein compare
BPHYT_RS19920 +1.0 1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17905 +1.0 1.1 fimbrial assembly family protein compare
BPHYT_RS13160 +1.0 1.1 membrane protein compare
BPHYT_RS11750 +1.0 1.8 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS00705 +1.0 2.0 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS24045 +1.0 2.1 amino acid ABC transporter compare
BPHYT_RS33690 +1.0 0.9 molybdate ABC transporter permease compare
BPHYT_RS23875 +1.0 1.0 sugar ABC transporter ATP-binding protein compare
BPHYT_RS21870 +1.0 1.3 hypothetical protein compare
BPHYT_RS25845 +1.0 1.1 RND transporter MFP subunit compare
BPHYT_RS23525 +1.0 1.2 hypothetical protein compare
BPHYT_RS25370 +1.0 1.8 acyl-CoA dehydrogenase compare
BPHYT_RS33355 +1.0 2.4 oxalyl-CoA decarboxylase compare
BPHYT_RS29870 +1.0 1.6 2-dehydropantoate 2-reductase compare
BPHYT_RS30040 +1.0 1.2 hypothetical protein compare
BPHYT_RS20120 +1.0 2.2 porin compare
BPHYT_RS02770 +1.0 2.0 membrane protein compare
BPHYT_RS32845 +1.0 2.7 ABC transporter substrate-binding protein compare
BPHYT_RS09885 +1.0 2.7 isomerase compare
BPHYT_RS05675 +1.0 4.3 hypothetical protein compare
BPHYT_RS26780 +1.0 2.2 chemotaxis protein CheR compare
BPHYT_RS16095 +1.0 2.3 ABC transporter for D-Sorbitol, ATPase component (from data) compare
BPHYT_RS04625 +1.0 1.1 urea ABC transporter ATP-binding protein compare
BPHYT_RS03090 +1.0 1.0 hypothetical protein compare
BPHYT_RS29150 +1.0 1.0 lysine transporter LysE compare
BPHYT_RS24500 +0.9 1.3 histidine kinase compare
BPHYT_RS21805 +0.9 1.6 transcriptional regulator compare
BPHYT_RS14585 +0.9 1.5 hypothetical protein compare
BPHYT_RS31525 +0.9 1.3 hypothetical protein compare
BPHYT_RS23920 +0.9 1.2 malonate decarboxylase subunit beta compare
BPHYT_RS28255 +0.9 1.1 hypothetical protein compare
BPHYT_RS22775 +0.9 2.6 sugar ABC transporter permease compare
BPHYT_RS13125 +0.9 1.7 ABC transporter ATP-binding protein compare
BPHYT_RS36470 +0.9 1.4 hypothetical protein compare
BPHYT_RS28270 +0.9 2.7 ABC transporter substrate-binding protein compare
BPHYT_RS00790 +0.9 1.3 conjugal transfer protein TraF compare
BPHYT_RS35645 +0.9 3.9 porin compare
BPHYT_RS22910 +0.9 0.9 hypothetical protein compare
BPHYT_RS20805 +0.9 2.8 LacI family transcriptional regulator compare
BPHYT_RS25955 +0.9 1.1 transcriptional regulator compare
BPHYT_RS05850 +0.9 1.9 hypothetical protein compare
BPHYT_RS02150 +0.9 2.6 biotin synthase compare
BPHYT_RS33060 +0.9 1.0 hypothetical protein compare
BPHYT_RS28690 +0.9 0.9 diguanylate phosphodiesterase compare
BPHYT_RS07170 +0.9 2.2 ABC transporter compare
BPHYT_RS30325 +0.9 3.1 4-oxalomesaconate hydratase compare
BPHYT_RS09365 +0.9 0.8 cytochrome C2 compare
BPHYT_RS31730 +0.9 1.8 aminotransferase class III compare
BPHYT_RS21765 +0.9 1.4 IclR family transcriptional regulator compare
BPHYT_RS14900 +0.9 1.8 prephenate dehydrogenase compare
BPHYT_RS23315 +0.9 1.4 hypothetical protein compare
BPHYT_RS05705 +0.9 0.7 hypothetical protein compare
BPHYT_RS25830 +0.9 1.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS11125 +0.9 1.0 alkylhydroperoxidase compare
BPHYT_RS05175 +0.9 0.8 hypothetical protein compare
BPHYT_RS02600 +0.9 1.5 glutaredoxin compare
BPHYT_RS18590 +0.9 0.6 hypothetical protein compare
BPHYT_RS33515 +0.9 4.9 porin compare
BPHYT_RS31050 +0.9 0.8 epimerase compare
BPHYT_RS16755 +0.9 2.8 hypothetical protein compare
BPHYT_RS05880 +0.9 1.7 hypothetical protein compare
BPHYT_RS22205 +0.9 1.3 hypothetical protein compare
BPHYT_RS35305 +0.9 2.5 low molecular weight phosphotyrosine protein phosphatase compare
BPHYT_RS05725 +0.9 1.4 hypothetical protein compare
BPHYT_RS23385 +0.9 1.2 group 1 glycosyl transferase compare
BPHYT_RS25815 +0.9 1.4 deoxyribose-phosphate aldolase compare
BPHYT_RS08600 +0.9 1.3 hypothetical protein compare
BPHYT_RS11995 +0.9 1.5 flagellar hook protein FlgE compare
BPHYT_RS23345 +0.9 3.7 nucleotide sugar dehydrogenase compare
BPHYT_RS07320 +0.9 1.1 dihydrodipicolinate synthetase compare
BPHYT_RS33385 +0.9 1.4 major facilitator superfamily protein compare
BPHYT_RS31700 +0.9 2.4 porin compare
BPHYT_RS28595 +0.9 0.9 glyoxalase compare
BPHYT_RS13345 +0.9 1.7 crotonase compare
BPHYT_RS05455 +0.9 0.9 AraC family transcriptional regulator compare
BPHYT_RS30100 +0.8 0.9 copper oxidase compare
BPHYT_RS33175 +0.8 1.2 hypothetical protein compare
BPHYT_RS23500 +0.8 1.4 hypothetical protein compare
BPHYT_RS25275 +0.8 1.8 MarR family transcriptional regulator compare
BPHYT_RS01955 +0.8 1.8 hypothetical protein compare
BPHYT_RS26465 +0.8 0.9 metallophosphoesterase compare
BPHYT_RS02105 +0.8 1.9 multidrug DMT transporter permease compare
BPHYT_RS20070 +0.8 1.5 hypothetical protein compare
BPHYT_RS36130 +0.8 1.0 hypothetical protein compare
BPHYT_RS30135 +0.8 3.0 SAM-dependent methyltransferase compare
BPHYT_RS27655 +0.8 1.2 potassium transporter compare
BPHYT_RS08170 +0.8 1.3 pilus assembly protein CpaB compare
BPHYT_RS12215 +0.8 2.7 glutathione peroxidase compare
BPHYT_RS10590 +0.8 1.7 hypothetical protein compare
BPHYT_RS33825 +0.8 1.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS24580 +0.8 1.0 hypothetical protein compare
BPHYT_RS02245 +0.8 2.1 MerR family transcriptional regulator compare
BPHYT_RS20830 +0.8 2.7 electron transfer flavoprotein subunit beta compare
BPHYT_RS32365 +0.8 1.6 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS06775 +0.8 2.1 nucleotide-binding protein compare
BPHYT_RS36090 +0.8 1.0 hypothetical protein compare
BPHYT_RS20680 +0.8 1.7 LacI family transcriptional regulator compare
BPHYT_RS25110 +0.8 1.4 sarcosine oxidase subunit delta compare
BPHYT_RS01585 +0.8 3.2 major facilitator superfamily protein compare
BPHYT_RS30815 +0.8 1.8 2-methylcitrate dehydratase compare
BPHYT_RS11000 +0.8 2.1 glutathione S-transferase compare
BPHYT_RS25270 +0.8 1.7 multidrug MFS transporter compare
BPHYT_RS21905 +0.8 0.7 IclR family transcriptional regulator compare
BPHYT_RS06470 +0.8 0.6 membrane protein compare
BPHYT_RS16070 +0.8 1.5 AraC family transcriptional regulator compare
BPHYT_RS34975 +0.8 1.5 L-aspartate dehydrogenase compare
BPHYT_RS01985 +0.8 1.3 hypothetical protein compare
BPHYT_RS35120 +0.8 1.1 hypothetical protein compare
BPHYT_RS08360 +0.8 1.2 LysR family transcriptional regulator compare
BPHYT_RS11820 +0.8 1.8 amidohydrolase compare
BPHYT_RS13310 +0.8 1.0 dihydropyrimidine dehydrogenase subunit B compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms