Experiment set13IT094 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SMc00329 -5.8 -2.4 iron response regulator protein compare
SMc00859 -5.5 -1.9 hypothetical protein compare
SMc00691 -5.4 -2.7 site-specific tyrosine recombinase XerD compare
SMa5018 -5.2 -1.5 hypothetical protein compare
SM_b20563 -5.1 -2.0 hypothetical protein compare
SMc04404 -4.8 -1.0 amino acid efflux transmembrane protein compare
SMc00013 -4.5 -1.6 cytochrome C oxidase subunit III transmembrane protein compare
SMc02850 -4.5 -2.4 DNA polymerase I compare
SMa1894 -4.5 -2.0 methionine sulfoxide reductase B compare
SMc01208 -4.4 -2.2 peptidyl-prolyl cis-trans isomerase B protein compare
SMc02485 -4.4 -1.5 signal peptide protein compare
SMc04391 -4.4 -1.5 3-ketoacyl-ACP reductase compare
SMc02753 -4.3 -0.9 PTS system transporter subunit IIA compare
SM_b20323 -4.3 -0.9 transcriptional regulator compare
SMc01206 -4.3 -1.2 queuine tRNA-ribosyltransferase compare
SMc03100 -4.3 -1.5 hypothetical protein compare
SMc00569 -4.2 -1.7 hypothetical protein compare
SMc01119 -4.2 -1.2 hypothetical protein compare
SMc02544 -4.2 -0.8 hypothetical protein compare
SMc04242 -4.2 -1.4 zinc uptake regulation protein compare
SMa1095 -4.1 -0.8 hypothetical protein compare
SMc00012 -4.0 -1.4 cytochrome C oxidase assembly protein compare
SMc02338 -4.0 -1.6 periplasmic binding ABC transporter protein compare
SMc00189 -3.9 -4.0 cytochrome C1 protein compare
SMc02232 -3.8 -1.7 hypothetical protein compare
SMc00876 -3.8 -6.1 ATP-binding MRP protein compare
SM_b21480 -3.8 -1.1 hypothetical protein compare
SMc01220 -3.8 -4.1 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00067 -3.7 -6.2 outer-membranne lipoprotein compare
SMc02631 -3.7 -1.1 hypothetical protein compare
SMc02739 -3.7 -3.3 glycine betaine transport ATP-binding ABC transporter protein compare
SMc02149 -3.6 -1.0 hypothetical protein compare
SMc04024 -3.6 -3.8 membrane-bound lytic murein transglycosylase compare
SMc02641 -3.6 -3.2 UDP-glucose 6-dehydrogenase compare
SMc00451 -3.6 -7.0 processing protease compare
SMc00760 -3.5 -3.9 recombinase A compare
SMc04003 -3.5 -1.0 50S ribosomal protein L36 compare
SMc02510 -3.5 -0.7 ferric uptake regulation protein compare
SMc00806 -3.5 -2.1 hypothetical protein compare
SMc03127 -3.5 -1.4 ABC transporter permease compare
SMc00334 -3.4 -1.2 cytidylate kinase compare
SMc03184 -3.4 -1.0 PH adaptation potassium efflux system G transmembrane protein compare
SMc00963 -3.4 -1.5 hypothetical protein compare
SMc00928 -3.3 -1.0 signal peptide protein compare
SMc00815 -3.3 -1.2 inosine 5'-monophosphate dehydrogenase compare
SMc00800 -3.3 -1.0 hypothetical protein compare
SMc02435 -3.3 -1.5 methyltransferase compare
SMc01974 -3.3 -2.8 transcriptional regulator compare
SM_b20026 -3.3 -1.3 hypothetical protein compare
SMc02144 -3.2 -1.7 phosphate ABC transporter permease compare
SMc00073 -3.2 -1.5 hypothetical protein compare
SMc02833 -3.2 -1.3 penicillin-insensitive murein endopeptidase compare
SMc01472 -3.2 -0.9 50S ribosomal protein L11 methyltransferase compare
SMc01361 -3.1 -1.9 dihydroorotase compare
SM_b20413 -3.1 -0.9 hypothetical protein compare
SMc03229 -3.1 -1.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03159 -3.1 -1.5 ABC transporter ATP-binding protein compare
SMa1765 -3.1 -0.9 hypothetical protein compare
SMc02640 -3.0 -4.1 UDP-glucuronic acid epimerase compare
SMc02266 -3.0 -1.2 hypothetical protein compare
SMc03978 -3.0 -2.1 transketolase compare
SMc01419 -3.0 -1.1 RNA polymerase sigma factor protein compare
SMa1073 -3.0 -1.2 TRm23b IS ATP-binding protein compare
SMc02683 -3.0 -1.5 hypothetical protein compare
SMc02234 -3.0 -1.3 hypothetical protein compare
SMc02250 -3.0 -3.9 large-conductance mechanosensitive channel compare
SMc01505 -3.0 -0.8 hypothetical protein compare
SMc03279 -2.9 -1.4 transposase number 2 for insertion sequence ISRM28 compare
SM_b22005 -2.9 -1.2 hypothetical protein compare
SMc00010 -2.9 -1.3 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02362 -2.9 -1.3 cytochrome c-type biogenesis protein CcmE compare
SMc01258 -2.8 -4.8 hypothetical protein compare
SMc04327 -2.8 -0.8 hypothetical protein compare
SMc00085 -2.8 -3.7 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02858 -2.8 -0.6 chaperone protein DnaJ compare
SMc01800 -2.8 -0.8 cytochrome C oxidase assembly transmembrane protein compare
SMc00450 -2.8 -1.1 protoheme IX farnesyltransferase compare
SMc01183 -2.7 -0.8 LexA repressor compare
SMc01519 -2.7 -2.2 hypothetical protein compare
SMc04296 -2.7 -0.7 cell division protein FtsZ compare
SMc00712 -2.7 -1.2 hypothetical protein compare
SMc03763 -2.7 -1.6 cytosine-specific methyltransferase compare
SMc04085 -2.7 -3.7 hypothetical protein compare
SMc02697 -2.6 -1.1 hypothetical protein compare
SMc02867 -2.6 -1.8 multidrug-efflux system transmembrane protein compare
SMc01850 -2.6 -2.1 hypothetical protein compare
SMc02102 -2.6 -1.7 hypothetical protein compare
SMc03836 -2.6 -0.7 acyl-CoA thioesterase i protein compare
SMc01342 -2.5 -3.7 hypothetical protein compare
SMc00169 -2.5 -9.6 malic enzyme compare
SM_b20728 -2.5 -1.6 hypothetical protein compare
SMc01242 -2.5 -1.2 signal peptide protein compare
SM_b20260 -2.4 -2.0 hypothetical protein compare
SMc00580 -2.4 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01235 -2.4 -8.6 excinuclease ABC subunit A compare
SMc00823 -2.4 -1.4 hypothetical protein compare
SMc00302 -2.4 -1.3 hypothetical protein compare
SMc03124 -2.4 -3.0 periplasmic binding ABC transporter protein compare
SMc03996 -2.4 -3.7 thiamine-phosphate pyrophosphorylase compare
SMc00987 -2.4 -1.9 hypothetical protein compare
SMa0789 -2.4 -2.4 GntR family transcriptional regulator compare
SMc02866 -2.4 -1.3 transcriptional regulator compare
SMc01845 -2.4 -1.3 transglycosylase transmembrane protein compare
SMc02856 -2.3 -6.3 penicillin-binding protein compare
SMc00914 -2.3 -2.9 oxidoreductase compare
SMc01969 -2.3 -4.2 hypothetical protein compare
SMc02904 -2.3 -1.6 hypothetical protein compare
SMc01471 -2.2 -2.0 cytochrome C oxidase assembly factor transmembrane protein compare
SMc00352 -2.2 -1.2 acetyltransferase compare
SMa0846 -2.2 -0.9 transposase, fragment compare
SMa0753 -2.2 -0.4 hypothetical protein compare
SMc00006 -2.2 -1.4 hypothetical protein compare
SM_b21096 -2.2 -0.9 amino acid transporter ABC transporter ATP-binding protein compare
SMa1757 -2.2 -3.0 Short chain compare
SM_b20953 -2.2 -0.9 hypothetical protein compare
SMc02114 -2.2 -2.6 hypothetical protein compare
SMc02280 -2.2 -1.4 hypothetical protein compare
SMc02639 -2.1 -1.0 transcriptional regulator compare
SMc03069 -2.1 -1.3 6-phosphogluconolactonase compare
SMc00427 -2.1 -0.9 peptide chain release factor RF-3 protein compare
SMc02719 -2.1 -0.4 transposase compare
SMc02897 -2.0 -1.3 cytochrome C transmembrane protein compare
SMc02894 -2.0 -1.9 hypothetical protein compare
SMa1243 -2.0 -2.2 Azu1 pseudoazurin compare
SM_b20089 -1.9 -1.5 hypothetical protein compare
SMa1297 -1.9 -2.3 hypothetical protein compare
SMc01660 -1.9 -1.7 hypothetical protein compare
SMc01147 -1.9 -1.2 coproporphyrinogen III oxidase compare
SM_b20811 -1.9 -1.9 hypothetical protein compare
SM_b20397 -1.9 -2.3 oxidoreductase compare
SMc03924 -1.9 -5.6 glycogen synthase compare
SMc02484 -1.9 -3.5 amino acid efflux transmembrane protein compare
SMa1700 -1.9 -1.3 hypothetical protein compare
SMc02309 -1.9 -2.4 arsenate reductase compare
SMa1838 -1.9 -1.9 dehydrogenase compare
SMc01502 -1.9 -2.1 hydrolase phosphatase compare
SMc04432 -1.9 -1.9 hypothetical protein compare
SMc01573 -1.8 -1.2 hypothetical protein compare
SMc01207 -1.8 -1.7 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04169 -1.8 -5.4 transcriptional regulator compare
SMc02077 -1.8 -1.2 exodeoxyribonuclease III protein compare
SMc03850 -1.8 -0.5 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02868 -1.8 -3.0 multidrug efflux system protein compare
SMc00412 -1.8 -2.6 orotidine 5'-phosphate decarboxylase compare
SMc02737 -1.8 -3.4 glycine betaine-binding ABC transporter protein compare
SMc04385 -1.7 -2.8 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b20880 -1.7 -3.5 ATP-dependent RNA helicase compare
SMc03186 -1.7 -1.7 transcriptional regulator compare
SMc01427 -1.7 -1.0 hypothetical protein compare
SM_b20725 -1.7 -1.4 hypothetical protein compare
SMa1092 -1.7 -1.2 hypothetical protein compare
SM_b21511 -1.7 -1.0 plasmid stability protein compare
SMc01653 -1.7 -2.2 ABC transporter ATP-binding protein compare
SMc02165 -1.7 -4.4 orotate phosphoribosyltransferase compare
SMc03839 -1.7 -1.0 hypothetical protein compare
SM_b20750 -1.6 -0.9 dehydrogenase compare
SMc00295 -1.6 -0.4 hypothetical protein compare
SMc01877 -1.6 -3.0 DNA repair protein compare
SMc04231 -1.6 -4.9 excinuclease ABC subunit B compare
SMc03070 -1.6 -3.2 glucose-6-phosphate 1-dehydrogenase compare
SMc00461 -1.6 -0.9 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc02145 -1.6 -0.4 signal peptide protein compare
SMc01461 -1.6 -3.1 DNA helicase II protein compare
SMc01204 -1.6 -4.0 transmembrane oxidoreductase compare
SMa0882 -1.6 -0.9 hypothetical protein compare
SMc03979 -1.6 -1.3 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b21213 -1.6 -2.2 serinethreonine protein phosphatase compare
SMa1935 -1.6 -1.7 TrpR binding protein WrbA compare
SM_b21569 -1.6 -1.0 transcriptional regulator compare
SMa0514 -1.6 -1.8 gluconate kinase compare
SMc02361 -1.5 -2.0 cytochrome C-type biogenesis transmembrane protein compare
SMc02886 -1.5 -1.3 signal peptide protein compare
SMc01241 -1.5 -1.3 hypothetical protein compare
SMa0312 -1.5 -1.5 hypothetical protein compare
SM_b20055 -1.5 -1.0 transcriptional regulator compare
SMc04224 -1.5 -0.9 hypothetical protein compare
SM_b21174 -1.5 -1.8 phosphate uptake ABC transporter permease compare
SMc02164 -1.5 -1.3 fructokinase compare
SM_b20275 -1.5 -2.5 hypothetical protein compare
SMc02908 -1.5 -2.2 recombination protein RecR compare
SMc03941 -1.5 -1.5 hypothetical protein compare
SMa0838 -1.4 -0.9 SyrA protein involved in EPS production compare
SMa0121 -1.4 -1.2 hypothetical protein compare
SMc04052 -1.4 -0.7 transcriptional regulator compare
SMc00827 -1.4 -3.8 transport transmembrane protein compare
SMc03795 -1.4 -0.7 isopropylmalate isomerase small subunit compare
SMc01644 -1.4 -2.5 ABC transporter permease compare
SMc00689 -1.4 -2.5 lipoprotein compare
SMc02543 -1.4 -1.6 hypothetical protein compare
SMc02155 -1.4 -5.2 hypothetical protein compare
SMc01360 -1.4 -1.1 aspartate carbamoyltransferase catalytic subunit compare
SMa5011 -1.4 -1.5 oxidoreductase compare
SMc00099 -1.4 -1.5 alkylphosphonate uptake protein compare
SMc03774 -1.4 -1.5 hypothetical protein compare
SM_b21175 -1.4 -1.7 phosphate uptake ABC transporter permease compare
SMc00233 -1.4 -2.7 hypothetical protein compare
SMa1046 -1.4 -2.9 adenylate cyclase compare
SM_b20721 -1.4 -1.7 two-component sensor histidine kinase compare
SM_b21100 -1.4 -1.4 polysaccharide deacetylase compare
SMc02812 -1.4 -1.6 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment