Experiment set13IT094 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.7 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17690 -7.5 -8.9 imidazole glycerol phosphate synthase compare
BPHYT_RS17675 -7.4 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33835 -7.3 -7.1 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17670 -7.3 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17400 -6.7 -8.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS17395 -6.7 -2.1 anthranilate synthase subunit II compare
BPHYT_RS09500 -6.6 -6.1 glucose-6-phosphate isomerase compare
BPHYT_RS06545 -6.0 -9.2 acetolactate synthase compare
BPHYT_RS17685 -5.9 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15920 -5.8 -11.9 argininosuccinate synthase compare
BPHYT_RS08955 -5.8 -5.7 homoserine dehydrogenase compare
BPHYT_RS33880 -5.8 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33875 -5.6 -8.3 tryptophan synthase subunit alpha compare
BPHYT_RS15915 -5.5 -8.4 ornithine carbamoyltransferase compare
BPHYT_RS04965 -5.4 -9.7 ATP-binding protein compare
BPHYT_RS33900 -5.3 -11.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS14915 -5.3 -6.0 phosphoserine aminotransferase compare
BPHYT_RS16245 -5.2 -3.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17890 -5.2 -2.8 shikimate kinase compare
BPHYT_RS33915 -5.1 -8.9 isopropylmalate isomerase compare
BPHYT_RS03150 -5.0 -12.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06555 -5.0 -8.1 ketol-acid reductoisomerase compare
BPHYT_RS17405 -5.0 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS17855 -4.9 -15.3 glutamate synthase compare
BPHYT_RS04955 -4.9 -2.2 methionyl-tRNA synthetase compare
BPHYT_RS15570 -4.9 -10.4 NAD-dependent dehydratase compare
BPHYT_RS18320 -4.8 -5.7 orotate phosphoribosyltransferase compare
BPHYT_RS33865 -4.8 -7.8 tryptophan synthase alpha chain compare
BPHYT_RS02590 -4.7 -8.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15640 -4.7 -15.0 L-aspartate oxidase compare
BPHYT_RS04725 -4.5 -8.1 sulfite reductase compare
BPHYT_RS13705 -4.5 -4.4 chorismate synthase compare
BPHYT_RS12985 -4.5 -2.8 amino acid acetyltransferase compare
BPHYT_RS17390 -4.4 -9.8 anthranilate synthase subunit I compare
BPHYT_RS14910 -4.4 -9.0 chorismate mutase compare
BPHYT_RS21625 -4.3 -1.3 LysR family transcriptional regulator compare
BPHYT_RS33645 -4.3 -6.3 homoserine kinase compare
BPHYT_RS09515 -4.3 -3.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16835 -4.3 -5.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04740 -4.2 -6.0 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14895 -4.2 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS01625 -4.2 -2.9 chemotaxis protein CheY compare
BPHYT_RS17715 -4.1 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15645 -4.1 -6.7 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS01595 -4.1 -8.3 homoserine O-acetyltransferase compare
BPHYT_RS17700 -4.0 -4.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17920 -4.0 -1.8 protein CyaY compare
BPHYT_RS12530 -4.0 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16270 -3.9 -3.0 phosphoglycerate kinase compare
BPHYT_RS11635 -3.9 -1.2 RNA polymerase subunit sigma-24 compare
BPHYT_RS33840 -3.9 -5.9 amidophosphoribosyltransferase compare
BPHYT_RS06900 -3.8 -3.7 aspartate aminotransferase compare
BPHYT_RS04720 -3.8 -4.8 transcriptional regulator compare
BPHYT_RS08850 -3.8 -2.4 transcriptional regulator compare
BPHYT_RS13220 -3.8 -4.9 phosphomethylpyrimidine synthase compare
BPHYT_RS14190 -3.7 -5.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12840 -3.7 -3.6 pyruvate dehydrogenase compare
BPHYT_RS15650 -3.7 -9.5 quinolinate synthetase compare
BPHYT_RS26685 -3.7 -1.6 precorrin-8X methylmutase compare
BPHYT_RS12845 -3.7 -12.8 ATPase compare
BPHYT_RS06610 -3.7 -1.6 triosephosphate isomerase compare
BPHYT_RS02865 -3.6 -4.4 hypothetical protein compare
BPHYT_RS03535 -3.5 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS06405 -3.5 -4.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS29920 -3.3 -1.5 hypothetical protein compare
BPHYT_RS08960 -3.3 -1.7 threonine synthase compare
BPHYT_RS03640 -3.3 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17885 -3.3 -5.9 3-dehydroquinate synthase compare
BPHYT_RS14845 -3.3 -2.2 cysteine synthase compare
BPHYT_RS15710 -3.2 -1.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16735 -3.1 -4.6 phosphogluconate dehydratase compare
BPHYT_RS06045 -3.1 -6.5 transaldolase compare
BPHYT_RS16840 -3.1 -3.0 transketolase compare
BPHYT_RS03725 -3.1 -1.6 serine hydroxymethyltransferase compare
BPHYT_RS12465 -3.0 -2.5 inositol monophosphatase compare
BPHYT_RS16905 -2.9 -4.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS10100 -2.9 -3.6 dihydroxy-acid dehydratase compare
BPHYT_RS04745 -2.9 -5.1 sulfate adenylyltransferase compare
BPHYT_RS16250 -2.9 -1.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS15670 -2.8 -11.4 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS19680 -2.7 -11.5 glutamate--cysteine ligase compare
BPHYT_RS32260 -2.7 -0.9 hypothetical protein compare
BPHYT_RS02905 -2.7 -15.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS03645 -2.7 -1.8 tRNA dimethylallyltransferase compare
BPHYT_RS04730 -2.6 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS02765 -2.5 -2.2 cytochrome BD oxidase subunit I compare
BPHYT_RS23230 -2.5 -1.5 histidine kinase compare
BPHYT_RS09315 -2.5 -1.1 chemotaxis protein CheY compare
BPHYT_RS04820 -2.5 -5.7 LysR family transcriptional regulator compare
BPHYT_RS16255 -2.5 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS02795 -2.5 -5.1 glycosyl transferase compare
BPHYT_RS17380 -2.4 -5.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS16340 -2.4 -5.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS09160 -2.4 -6.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS01505 -2.4 -2.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS05010 -2.4 -3.6 RpiR family transcriptional regulator compare
BPHYT_RS25500 -2.4 -1.4 hypothetical protein compare
BPHYT_RS06350 -2.3 -2.2 chemotaxis protein CheY compare
BPHYT_RS12615 -2.3 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS03625 -2.2 -7.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS33920 -2.2 -5.7 type II citrate synthase compare
BPHYT_RS17095 -2.2 -2.1 proline--tRNA ligase compare
BPHYT_RS14945 -2.1 -3.3 phosphoglycolate phosphatase compare
BPHYT_RS17035 -2.1 -2.6 sugar kinase compare
BPHYT_RS18655 -2.1 -5.1 3-oxoacyl-ACP synthase compare
BPHYT_RS10470 -2.1 -2.1 hypothetical protein compare
BPHYT_RS05020 -2.0 -5.7 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS02610 -2.0 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17100 -2.0 -5.0 RNA pyrophosphohydrolase compare
BPHYT_RS13605 -2.0 -0.9 tRNA-Pro compare
BPHYT_RS30750 -2.0 -1.9 GntR family transcriptional regulator compare
BPHYT_RS14400 -1.9 -3.4 anti-sigma factor compare
BPHYT_RS04750 -1.9 -2.5 uroporphyrin-III C-methyltransferase compare
BPHYT_RS14865 -1.9 -1.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06175 -1.9 -5.9 LPS biosynthesis compare
BPHYT_RS33030 -1.9 -1.0 hypothetical protein compare
BPHYT_RS25270 -1.9 -2.5 multidrug MFS transporter compare
BPHYT_RS28255 -1.8 -1.1 hypothetical protein compare
BPHYT_RS14855 -1.8 -2.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS26695 -1.8 -3.1 cobalamin biosynthesis protein CbiG compare
BPHYT_RS06345 -1.8 -4.7 sensor histidine kinase compare
BPHYT_RS01485 -1.8 -0.9 histidine kinase compare
BPHYT_RS34815 -1.7 -2.1 ABC transporter compare
BPHYT_RS02435 -1.7 -1.3 hypothetical protein compare
BPHYT_RS08995 -1.7 -1.3 hypothetical protein compare
BPHYT_RS13645 -1.7 -9.8 threonine--tRNA ligase compare
BPHYT_RS23910 -1.7 -2.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS35215 -1.7 -0.9 dehydrogenase compare
BPHYT_RS08335 -1.7 -1.2 hypothetical protein compare
BPHYT_RS16975 -1.7 -3.9 shikimate 5-dehydrogenase compare
BPHYT_RS05960 -1.7 -3.3 endoribonuclease L-PSP compare
BPHYT_RS20665 -1.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06530 -1.6 -1.1 membrane protein compare
BPHYT_RS03570 -1.6 -3.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS20630 -1.6 -1.7 patatin compare
BPHYT_RS10475 -1.6 -1.6 mammalian cell entry protein compare
BPHYT_RS34805 -1.6 -5.0 ABC transporter compare
BPHYT_RS06075 -1.6 -4.6 hypothetical protein compare
BPHYT_RS26185 -1.6 -1.1 thioesterase compare
BPHYT_RS26040 -1.6 -1.5 cysteine hydrolase compare
BPHYT_RS25070 -1.6 -1.3 choline ABC transporter permease compare
BPHYT_RS34410 -1.6 -1.4 hypothetical protein compare
BPHYT_RS05040 -1.6 -3.5 sugar ABC transporter ATPase compare
BPHYT_RS14550 -1.6 -0.8 tRNA-Asn compare
BPHYT_RS10540 -1.6 -1.5 secretion protein compare
BPHYT_RS31060 -1.6 -1.1 capsular polysaccharide biosynthesis protein compare
BPHYT_RS06550 -1.6 -2.2 acetolactate synthase compare
BPHYT_RS23475 -1.6 -1.3 luciferase compare
BPHYT_RS16345 -1.6 -2.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS36220 -1.5 -0.9 hypothetical protein compare
BPHYT_RS15415 -1.5 -6.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18340 -1.5 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12150 -1.5 -7.4 PII uridylyl-transferase compare
BPHYT_RS11285 -1.5 -2.8 LacI family transcription regulator compare
BPHYT_RS01620 -1.5 -5.3 sensor histidine kinase compare
BPHYT_RS23570 -1.5 -3.7 chemotaxis protein CheY compare
BPHYT_RS05035 -1.5 -3.5 sugar ABC transporter permease compare
BPHYT_RS04890 -1.5 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS06375 -1.5 -3.3 ribonuclease compare
BPHYT_RS01590 -1.5 -6.3 methionine biosynthesis protein MetW compare
BPHYT_RS26680 -1.5 -2.1 oxidoreductase compare
BPHYT_RS06685 -1.4 -0.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS21685 -1.4 -2.4 cobalamin biosynthesis protein CobS compare
BPHYT_RS21215 -1.4 -3.2 Crp/Fnr family transcriptional regulator compare
BPHYT_RS04895 -1.4 -3.4 adenosylcobinamide kinase compare
BPHYT_RS02560 -1.4 -4.9 glutathione synthetase compare
BPHYT_RS34810 -1.4 -2.7 RND transporter compare
BPHYT_RS09145 -1.4 -7.6 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS26670 -1.4 -2.1 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS18760 -1.4 -2.5 flagellar biosynthesis protein FliT compare
BPHYT_RS25095 -1.4 -1.5 AraC family transcriptional regulator compare
BPHYT_RS13835 -1.4 -1.1 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS12290 -1.4 -2.0 universal stress protein UspA compare
BPHYT_RS24095 -1.4 -2.5 membrane protein compare
BPHYT_RS02540 -1.4 -1.4 hypothetical protein compare
BPHYT_RS32155 -1.4 -3.2 type IV secretion system protein VirB11 compare
BPHYT_RS29520 -1.3 -0.8 hypothetical protein compare
BPHYT_RS15620 -1.3 -2.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS32145 -1.3 -4.0 type IV secretory pathway protein VirD4 compare
BPHYT_RS31635 -1.3 -1.8 choline dehydrogenase compare
BPHYT_RS03215 -1.3 -1.8 TetR family transcriptional regulator compare
BPHYT_RS30055 -1.3 -1.6 hypothetical protein compare
BPHYT_RS00295 -1.3 -2.1 hypothetical protein compare
BPHYT_RS33580 -1.3 -3.0 geranyltranstransferase compare
BPHYT_RS30860 -1.3 -1.3 sugar ABC transporter permease compare
BPHYT_RS03110 -1.3 -1.8 MarR family transcriptional regulator compare
BPHYT_RS12935 -1.3 -4.5 chemotaxis protein CheY compare
BPHYT_RS09480 -1.3 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS23090 -1.3 -1.3 histidine kinase compare
BPHYT_RS19545 -1.3 -3.6 nuclear protein SET compare
BPHYT_RS17490 -1.3 -1.5 haloacid dehalogenase compare
BPHYT_RS15015 -1.3 -1.2 ArsR family transcriptional regulator compare
BPHYT_RS30995 -1.3 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS05155 -1.2 -4.1 acetyltransferase GCN5 compare
BPHYT_RS14485 -1.2 -2.6 ribonuclease E compare
BPHYT_RS05905 -1.2 -0.9 hypothetical protein compare
BPHYT_RS11205 -1.2 -6.6 LacI family transcription regulator compare
BPHYT_RS07570 -1.2 -0.7 hypothetical protein compare
BPHYT_RS18705 -1.2 -1.2 5,10-methylenetetrahydrofolate reductase compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms