Experiment set13IT093 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SMc04024 -4.9 -5.9 membrane-bound lytic murein transglycosylase compare
SMc00013 -4.7 -2.0 cytochrome C oxidase subunit III transmembrane protein compare
SMc02850 -4.7 -3.0 DNA polymerase I compare
SMc00876 -4.4 -6.1 ATP-binding MRP protein compare
SMc01881 -4.4 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00067 -4.2 -13.0 outer-membranne lipoprotein compare
SMc00012 -4.2 -1.8 cytochrome C oxidase assembly protein compare
SMc02115 -4.1 -1.0 hypothetical protein compare
SMc01242 -4.0 -2.8 signal peptide protein compare
SMc02077 -4.0 -3.0 exodeoxyribonuclease III protein compare
SMc02055 -4.0 -1.9 phytoene synthase compare
SMc01220 -3.9 -5.3 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00329 -3.9 -2.8 iron response regulator protein compare
SMc00334 -3.7 -1.5 cytidylate kinase compare
SMc02640 -3.6 -5.0 UDP-glucuronic acid epimerase compare
SMc03746 -3.6 -2.6 hypothetical protein compare
SMc00492 -3.5 -0.9 hypothetical protein compare
SMc02144 -3.4 -2.2 phosphate ABC transporter permease compare
SMc02232 -3.4 -2.6 hypothetical protein compare
SMc00928 -3.4 -1.2 signal peptide protein compare
SMc00451 -3.4 -7.2 processing protease compare
SMc04246 -3.4 -2.0 transmembrane signal peptide protein compare
SMc00987 -3.3 -2.7 hypothetical protein compare
SMc00302 -3.3 -2.1 hypothetical protein compare
SMa0789 -3.2 -3.3 GntR family transcriptional regulator compare
SMc03978 -3.2 -2.2 transketolase compare
SMc02866 -3.2 -3.0 transcriptional regulator compare
SMc02234 -3.2 -1.7 hypothetical protein compare
SMc00404 -3.2 -1.1 hypothetical protein compare
SMc01258 -3.1 -6.1 hypothetical protein compare
SMa0955 -3.1 -1.9 GntR family transcriptional regulator compare
SMc00963 -3.1 -2.2 hypothetical protein compare
SM_b20086 -3.1 -2.2 hypothetical protein compare
SMc00010 -3.1 -1.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02753 -3.0 -1.0 PTS system transporter subunit IIA compare
SMc01119 -2.9 -1.7 hypothetical protein compare
SMc04242 -2.9 -1.7 zinc uptake regulation protein compare
SMc02858 -2.9 -0.7 chaperone protein DnaJ compare
SMc03763 -2.9 -2.0 cytosine-specific methyltransferase compare
SMc01183 -2.8 -1.0 LexA repressor compare
SMc04296 -2.8 -0.9 cell division protein FtsZ compare
SMc01361 -2.8 -3.3 dihydroorotase compare
SMc00189 -2.8 -5.8 cytochrome C1 protein compare
SMc02856 -2.7 -10.5 penicillin-binding protein compare
SMc02833 -2.7 -1.9 penicillin-insensitive murein endopeptidase compare
SMc00914 -2.7 -3.7 oxidoreductase compare
SMc00169 -2.7 -13.9 malic enzyme compare
SMa1924 -2.6 -0.9 hypothetical protein compare
SMc00088 -2.6 -1.2 hypothetical protein compare
SMc01360 -2.6 -2.0 aspartate carbamoyltransferase catalytic subunit compare
SMc03070 -2.5 -6.6 glucose-6-phosphate 1-dehydrogenase compare
SMc01472 -2.5 -1.2 50S ribosomal protein L11 methyltransferase compare
SMc02724 -2.5 -3.3 hypothetical protein compare
SMc00450 -2.5 -1.7 protoheme IX farnesyltransferase compare
SMc00602 -2.5 -5.3 excinuclease ABC subunit C compare
SMc03967 -2.5 -1.0 Holliday junction resolvase compare
SMc00085 -2.4 -5.4 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02641 -2.4 -2.7 UDP-glucose 6-dehydrogenase compare
SM_b21667 -2.3 -2.8 hypothetical protein compare
SMc02582 -2.3 -3.2 hypothetical protein compare
SMc00427 -2.3 -1.2 peptide chain release factor RF-3 protein compare
SMc02149 -2.3 -1.3 hypothetical protein compare
SM_b20323 -2.2 -0.9 transcriptional regulator compare
SMc01471 -2.2 -2.4 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02362 -2.2 -1.6 cytochrome c-type biogenesis protein CcmE compare
SMc02636 -2.2 -2.4 hypothetical protein compare
SMc02812 -2.2 -3.4 hypothetical protein compare
SMc02246 -2.1 -0.5 hypothetical protein compare
SMc01147 -2.1 -1.5 coproporphyrinogen III oxidase compare
SMa1323 -2.1 -2.6 Transcription regulator compare
SMa0349 -2.1 -2.3 hypothetical protein compare
SMc00378 -2.1 -2.7 exodeoxyribonuclease VII large subunit compare
SMc02165 -2.1 -4.9 orotate phosphoribosyltransferase compare
SM_b20021 -2.1 -0.7 transcriptional regulator compare
SMc03069 -2.1 -2.1 6-phosphogluconolactonase compare
SM_b20563 -2.0 -2.4 hypothetical protein compare
SMc01342 -2.0 -3.6 hypothetical protein compare
SMc02901 -2.0 -0.7 hypothetical protein compare
SMc00073 -2.0 -1.7 hypothetical protein compare
SMc01347 -2.0 -3.0 hypothetical protein compare
SMc04385 -1.9 -4.3 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00419 -1.9 -4.0 glutathione synthetase compare
SMc03924 -1.9 -7.6 glycogen synthase compare
SMc01969 -1.9 -4.5 hypothetical protein compare
SMc01578 -1.9 -6.6 aspartate aminotransferase compare
SMc03850 -1.9 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc01850 -1.9 -2.6 hypothetical protein compare
SMc01880 -1.9 -1.3 pantoate--beta-alanine ligase compare
SMc00689 -1.9 -3.5 lipoprotein compare
SMc01800 -1.9 -0.8 cytochrome C oxidase assembly transmembrane protein compare
SMc01644 -1.8 -2.9 ABC transporter permease compare
SMc00006 -1.8 -2.1 hypothetical protein compare
SMc00188 -1.8 -4.8 cytochrome B transmembrane protein compare
SMc00412 -1.8 -3.2 orotidine 5'-phosphate decarboxylase compare
SMc02867 -1.8 -2.7 multidrug-efflux system transmembrane protein compare
SMc02505 -1.8 -0.9 hypothetical protein compare
SMc01765 -1.8 -1.3 hypothetical protein compare
SM_b21096 -1.8 -1.0 amino acid transporter ABC transporter ATP-binding protein compare
SM_b20758 -1.7 -1.8 ArsR family transcriptional regulator compare
SMc00030 -1.7 -2.7 hypothetical protein compare
SMc04169 -1.7 -6.6 transcriptional regulator compare
SMc00760 -1.7 -3.6 recombinase A compare
SM_b20307 -1.7 -0.7 dihydroxyacetone kinase compare
SM_b20880 -1.7 -6.8 ATP-dependent RNA helicase compare
SMc03996 -1.7 -2.9 thiamine-phosphate pyrophosphorylase compare
SMc02425 -1.7 -2.1 transcriptional regulator compare
SMc02145 -1.7 -0.6 signal peptide protein compare
SMc02050 -1.6 -3.0 trigger factor compare
SMc00937 -1.6 -7.6 TRK system potassium uptake transmembrane protein compare
SMc02155 -1.6 -6.5 hypothetical protein compare
SMc01495 -1.6 -1.7 transcriptional regulator compare
SM_b21175 -1.6 -2.8 phosphate uptake ABC transporter permease compare
SMc04121 -1.6 -1.1 uracil phosphoribosyltransferase compare
SMc01206 -1.6 -1.2 queuine tRNA-ribosyltransferase compare
SMc00640 -1.6 -4.4 phosphoserine aminotransferase compare
SMc04384 -1.6 -4.5 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc00691 -1.6 -2.5 site-specific tyrosine recombinase XerD compare
SMc01568 -1.6 -0.5 hypothetical protein compare
SMc01235 -1.6 -8.1 excinuclease ABC subunit A compare
SM_b22001 -1.6 -1.3 hypothetical protein compare
SMc00556 -1.5 -3.4 DNA repair protein RadA compare
SMc00800 -1.5 -1.0 hypothetical protein compare
SMc01608 -1.5 -3.3 ABC transporter ATP-binding protein compare
SMc04085 -1.5 -2.4 hypothetical protein compare
SMc00579 -1.5 -4.7 dimethyladenosine transferase compare
SMc01974 -1.5 -2.2 transcriptional regulator compare
SMc00981 -1.5 -3.3 ferredoxin protein compare
SMc02543 -1.5 -2.4 hypothetical protein compare
SMc02102 -1.5 -2.0 hypothetical protein compare
SMa1639 -1.5 -1.3 hypothetical protein compare
SMc02166 -1.5 -5.3 dihydroorotase compare
SMa0112 -1.5 -2.4 hypothetical protein compare
SM_b20509 -1.5 -1.5 transcriptional regulator compare
SMc00009 -1.5 -4.3 cytochrome C oxidase subunit II protein compare
SMc01877 -1.5 -4.7 DNA repair protein compare
SMc03973 -1.4 -5.3 hypothetical protein compare
SMc03128 -1.4 -2.5 ABC transporter permease compare
SMc02140 -1.4 -0.8 phosphate regulon transcriptional regulatory protein compare
SMc01461 -1.4 -2.9 DNA helicase II protein compare
SMc02853 -1.4 -3.5 hypothetical protein compare
SM_b21551 -1.4 -0.7 hypothetical protein compare
SMc03053 -1.4 -0.9 flagellar biosynthesis protein FliQ compare
SMc04231 -1.4 -5.3 excinuclease ABC subunit B compare
SM_b21296 -1.4 -1.4 hypothetical protein compare
SMc03031 -1.4 -1.9 flagellar basal body P-ring biosynthesis protein FlgA compare
SM_b20540 -1.3 -0.8 hypothetical protein compare
SM_b21174 -1.3 -2.8 phosphate uptake ABC transporter permease compare
SMc00711 -1.3 -2.8 cyclohexadienyl dehydrogenase compare
SM_b21480 -1.3 -1.0 hypothetical protein compare
SMc03242 -1.3 -1.9 GTP-binding protein compare
SMc02941 -1.3 -3.2 hypothetical protein compare
SMc00815 -1.3 -0.8 inosine 5'-monophosphate dehydrogenase compare
SMc00456 -1.3 -4.1 hypothetical protein compare
SMc01607 -1.3 -3.8 permease compare
SMc01241 -1.3 -1.5 hypothetical protein compare
SMc02309 -1.3 -2.6 arsenate reductase compare
SMc01007 -1.3 -1.2 hypothetical protein compare
SMa1101 -1.3 -1.4 hypothetical protein compare
SMc00827 -1.3 -6.0 transport transmembrane protein compare
SMc02544 -1.3 -0.7 hypothetical protein compare
SM_b21479 -1.2 -1.2 hypothetical protein compare
SMc01569 -1.2 -0.4 carbamoyl phosphate synthase small subunit compare
SMc01641 -1.2 -2.4 carnitinyl-CoA dehydratase compare
SMa1630 -1.2 -1.1 hypothetical protein compare
SMc00580 -1.2 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01164 -1.2 -4.0 hypothetical protein compare
SMc01916 -1.2 -1.2 signal peptide protein compare
SMc00353 -1.2 -1.1 transmembrane protein compare
SMc00355 -1.2 -2.6 hypothetical protein compare
SMc02868 -1.2 -2.2 multidrug efflux system protein compare
SMc02738 -1.2 -4.8 glycine betaine transport system permease ABC transporter protein compare
SMa0450 -1.2 -0.9 hypothetical protein compare
SMc00712 -1.2 -1.0 hypothetical protein compare
SM_b20282 -1.2 -1.5 spermidine/putrescine ABC transporter permease compare
SMc00191 -1.2 -1.0 hypothetical protein compare
SM_b21454 -1.2 -1.2 hypothetical protein compare
SMa1757 -1.2 -2.4 Short chain compare
SMc00406 -1.2 -4.7 4Fe-4S ferredoxin compare
SMc02227 -1.2 -3.0 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc01581 -1.2 -2.1 hypothetical protein compare
SMc02897 -1.2 -1.7 cytochrome C transmembrane protein compare
SMc02114 -1.2 -1.8 hypothetical protein compare
SMc01770 -1.1 -1.2 serine hydroxymethyltransferase compare
SMa0211 -1.1 -0.7 hypothetical protein compare
SMc00982 -1.1 -3.0 dioxygenase compare
SM_b20083 -1.1 -1.5 hypothetical protein compare
SMa5032 -1.1 -2.4 hypothetical protein compare
SMc02558 -1.1 -2.8 hypothetical protein compare
SMc00641 -1.1 -4.1 D-3-phosphoglycerate dehydrogenase compare
SM_b21218 -1.1 -2.8 glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data) compare
SMa1223 -1.1 -2.2 hypothetical protein compare
SMc03839 -1.1 -1.2 hypothetical protein compare
SM_b21213 -1.1 -1.7 serinethreonine protein phosphatase compare
SMc01606 -1.1 -4.4 permease compare
SMc03051 -1.1 -1.4 flagellar biosynthesis repressor FlbT compare
SM_b20166 -1.1 -3.0 hypothetical protein compare
SMa1053 -1.1 -0.9 hypothetical protein compare
SMc03863 -1.1 -2.0 50S ribosomal protein L19 compare
SMa1995 -1.1 -3.3 ABC transporter permease compare
SMc02172 -1.1 -4.6 transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment