Experiment set13IT093 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS09500 -7.4 -5.1 glucose-6-phosphate isomerase compare
BPHYT_RS15570 -7.4 -5.1 NAD-dependent dehydratase compare
BPHYT_RS14915 -7.3 -5.1 phosphoserine aminotransferase compare
BPHYT_RS33835 -7.1 -8.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17690 -7.0 -10.8 imidazole glycerol phosphate synthase compare
BPHYT_RS33880 -6.8 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17400 -6.6 -7.7 anthranilate phosphoribosyltransferase compare
BPHYT_RS06555 -6.6 -9.0 ketol-acid reductoisomerase compare
BPHYT_RS06545 -6.5 -8.9 acetolactate synthase compare
BPHYT_RS13705 -6.3 -4.2 chorismate synthase compare
BPHYT_RS10100 -6.3 -4.4 dihydroxy-acid dehydratase compare
BPHYT_RS17685 -6.1 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33865 -6.0 -10.8 tryptophan synthase alpha chain compare
BPHYT_RS15920 -6.0 -12.8 argininosuccinate synthase compare
BPHYT_RS08955 -5.9 -5.7 homoserine dehydrogenase compare
BPHYT_RS17855 -5.8 -15.9 glutamate synthase compare
BPHYT_RS17680 -5.7 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17675 -5.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33915 -5.6 -7.4 isopropylmalate isomerase compare
BPHYT_RS03150 -5.5 -11.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04740 -5.3 -7.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33875 -5.3 -6.7 tryptophan synthase subunit alpha compare
BPHYT_RS33645 -5.3 -4.8 homoserine kinase compare
BPHYT_RS16245 -5.2 -3.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17890 -5.2 -2.7 shikimate kinase compare
BPHYT_RS33900 -5.1 -9.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS17390 -5.0 -15.0 anthranilate synthase subunit I compare
BPHYT_RS04965 -5.0 -9.6 ATP-binding protein compare
BPHYT_RS17395 -5.0 -2.1 anthranilate synthase subunit II compare
BPHYT_RS17405 -5.0 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS04955 -4.9 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS15640 -4.9 -11.7 L-aspartate oxidase compare
BPHYT_RS15915 -4.8 -9.4 ornithine carbamoyltransferase compare
BPHYT_RS03535 -4.8 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS01595 -4.7 -8.7 homoserine O-acetyltransferase compare
BPHYT_RS15645 -4.7 -9.1 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS15650 -4.7 -8.0 quinolinate synthetase compare
BPHYT_RS06045 -4.6 -8.3 transaldolase compare
BPHYT_RS15710 -4.5 -2.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS12985 -4.5 -2.7 amino acid acetyltransferase compare
BPHYT_RS17670 -4.4 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS18320 -4.4 -5.2 orotate phosphoribosyltransferase compare
BPHYT_RS09515 -4.3 -3.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33840 -4.2 -6.4 amidophosphoribosyltransferase compare
BPHYT_RS17885 -4.2 -6.4 3-dehydroquinate synthase compare
BPHYT_RS02590 -4.2 -7.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12845 -4.1 -14.5 ATPase compare
BPHYT_RS14855 -4.1 -3.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS13220 -4.0 -7.4 phosphomethylpyrimidine synthase compare
BPHYT_RS17715 -4.0 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS04720 -3.9 -6.0 transcriptional regulator compare
BPHYT_RS33905 -3.9 -1.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS04725 -3.9 -5.5 sulfite reductase compare
BPHYT_RS12530 -3.8 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS06900 -3.8 -3.7 aspartate aminotransferase compare
BPHYT_RS02795 -3.7 -6.0 glycosyl transferase compare
BPHYT_RS18340 -3.6 -2.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16835 -3.6 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14190 -3.5 -5.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16735 -3.5 -4.6 phosphogluconate dehydratase compare
BPHYT_RS33920 -3.5 -7.6 type II citrate synthase compare
BPHYT_RS01625 -3.5 -3.3 chemotaxis protein CheY compare
BPHYT_RS14910 -3.5 -5.0 chorismate mutase compare
BPHYT_RS17700 -3.4 -3.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16345 -3.4 -5.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS08960 -3.3 -1.7 threonine synthase compare
BPHYT_RS03640 -3.3 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17095 -3.3 -2.3 proline--tRNA ligase compare
BPHYT_RS14845 -3.3 -2.2 cysteine synthase compare
BPHYT_RS10240 -3.2 -1.4 translation initiation inhibitor compare
BPHYT_RS14195 -3.2 -2.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS15670 -3.2 -5.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS05010 -3.2 -3.8 RpiR family transcriptional regulator compare
BPHYT_RS16270 -3.2 -2.6 phosphoglycerate kinase compare
BPHYT_RS04290 -3.1 -2.2 glycosyl transferase family 2 compare
BPHYT_RS04730 -3.1 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03645 -3.0 -2.5 tRNA dimethylallyltransferase compare
BPHYT_RS02905 -3.0 -17.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS16905 -2.9 -4.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12840 -2.9 -3.9 pyruvate dehydrogenase compare
BPHYT_RS06405 -2.8 -3.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS03625 -2.8 -8.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS30750 -2.7 -2.5 GntR family transcriptional regulator compare
BPHYT_RS29920 -2.7 -1.4 hypothetical protein compare
BPHYT_RS04745 -2.7 -4.0 sulfate adenylyltransferase compare
BPHYT_RS19680 -2.7 -12.8 glutamate--cysteine ligase compare
BPHYT_RS28535 -2.6 -1.1 response regulator receiver compare
BPHYT_RS23230 -2.6 -1.5 histidine kinase compare
BPHYT_RS32260 -2.6 -1.6 hypothetical protein compare
BPHYT_RS14895 -2.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17100 -2.5 -7.9 RNA pyrophosphohydrolase compare
BPHYT_RS26670 -2.5 -3.4 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS16255 -2.5 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS24315 -2.5 -1.9 phosphoribosyltransferase compare
BPHYT_RS23650 -2.4 -1.0 hypothetical protein compare
BPHYT_RS14755 -2.4 -2.6 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS27390 -2.4 -2.9 hydroxyacid dehydrogenase compare
BPHYT_RS36275 -2.4 -1.4 hypothetical protein compare
BPHYT_RS34815 -2.4 -2.4 ABC transporter compare
BPHYT_RS36220 -2.3 -1.2 hypothetical protein compare
BPHYT_RS18705 -2.3 -2.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17380 -2.3 -6.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS05960 -2.2 -7.1 endoribonuclease L-PSP compare
BPHYT_RS16880 -2.1 -1.3 malic enzyme compare
BPHYT_RS15415 -2.1 -7.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12150 -2.1 -10.5 PII uridylyl-transferase compare
BPHYT_RS13080 -2.1 -1.5 hypothetical protein compare
BPHYT_RS06610 -2.1 -1.4 triosephosphate isomerase compare
BPHYT_RS08850 -2.0 -1.5 transcriptional regulator compare
BPHYT_RS12990 -2.0 -2.3 iron transporter compare
BPHYT_RS19325 -2.0 -2.3 glycine cleavage system H protein compare
BPHYT_RS12615 -2.0 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS28575 -2.0 -1.0 transcriptional regulator compare
BPHYT_RS23570 -2.0 -3.9 chemotaxis protein CheY compare
BPHYT_RS14865 -2.0 -2.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04820 -2.0 -4.2 LysR family transcriptional regulator compare
BPHYT_RS28485 -1.9 -1.3 GntR family transcriptional regulator compare
BPHYT_RS16840 -1.9 -2.6 transketolase compare
BPHYT_RS02760 -1.9 -1.6 cytochrome BD oxidase subunit II compare
BPHYT_RS03570 -1.9 -5.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS26675 -1.9 -1.6 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS24665 -1.8 -1.7 ABC transporter permease compare
BPHYT_RS05020 -1.8 -5.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS02560 -1.8 -5.9 glutathione synthetase compare
BPHYT_RS10095 -1.8 -2.9 integrase compare
BPHYT_RS25065 -1.8 -1.5 glycine/betaine ABC transporter ATPase compare
BPHYT_RS25970 -1.8 -1.2 urea amidolyase compare
BPHYT_RS17530 -1.8 -1.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02865 -1.8 -2.6 hypothetical protein compare
BPHYT_RS34805 -1.8 -6.1 ABC transporter compare
BPHYT_RS05655 -1.8 -2.5 membrane protein compare
BPHYT_RS04750 -1.7 -1.9 uroporphyrin-III C-methyltransferase compare
BPHYT_RS17525 -1.7 -1.9 glutaredoxin compare
BPHYT_RS26680 -1.7 -3.9 oxidoreductase compare
BPHYT_RS03215 -1.7 -2.3 TetR family transcriptional regulator compare
BPHYT_RS18655 -1.7 -2.4 3-oxoacyl-ACP synthase compare
BPHYT_RS17035 -1.7 -2.8 sugar kinase compare
BPHYT_RS21350 -1.7 -2.6 ADP-glucose pyrophosphorylase compare
BPHYT_RS02765 -1.7 -1.4 cytochrome BD oxidase subunit I compare
BPHYT_RS26665 -1.6 -4.6 cobalt-precorrin-6X reductase compare
BPHYT_RS26025 -1.6 -0.8 hypothetical protein compare
BPHYT_RS14400 -1.6 -2.6 anti-sigma factor compare
BPHYT_RS14900 -1.6 -1.9 prephenate dehydrogenase compare
BPHYT_RS02770 -1.6 -2.0 membrane protein compare
BPHYT_RS34780 -1.6 -2.7 phytoene synthase compare
BPHYT_RS01620 -1.6 -5.1 sensor histidine kinase compare
BPHYT_RS05040 -1.6 -2.3 sugar ABC transporter ATPase compare
BPHYT_RS29250 -1.6 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS34810 -1.5 -3.7 RND transporter compare
BPHYT_RS16290 -1.5 -0.9 hypothetical protein compare
BPHYT_RS30085 -1.5 -1.1 hypothetical protein compare
BPHYT_RS18760 -1.5 -1.6 flagellar biosynthesis protein FliT compare
BPHYT_RS23910 -1.5 -1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS05705 -1.5 -0.8 hypothetical protein compare
BPHYT_RS13645 -1.5 -9.6 threonine--tRNA ligase compare
BPHYT_RS17765 -1.5 -4.8 toluene ABC transporter ATP-binding protein compare
BPHYT_RS27920 -1.5 -1.1 tricarballylate utilization protein B compare
BPHYT_RS17520 -1.5 -2.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12935 -1.5 -4.3 chemotaxis protein CheY compare
BPHYT_RS16340 -1.4 -3.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS24840 -1.4 -4.1 cobalamin biosynthesis protein CobW compare
BPHYT_RS09445 -1.4 -4.6 trigger factor compare
BPHYT_RS09145 -1.4 -8.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS06075 -1.4 -4.6 hypothetical protein compare
BPHYT_RS09160 -1.4 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS34895 -1.4 -2.8 endonuclease compare
BPHYT_RS06535 -1.4 -3.2 membrane protein compare
BPHYT_RS06190 -1.4 -2.6 heptosyltransferase compare
BPHYT_RS04865 -1.4 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS09440 -1.3 -2.1 glycerate kinase compare
BPHYT_RS19115 -1.3 -2.6 acyl carrier protein compare
BPHYT_RS29950 -1.3 -1.6 hypothetical protein compare
BPHYT_RS01920 -1.3 -4.9 AsnC family transcriptional regulator compare
BPHYT_RS26695 -1.3 -2.1 cobalamin biosynthesis protein CbiG compare
BPHYT_RS21765 -1.3 -1.3 IclR family transcriptional regulator compare
BPHYT_RS06410 -1.3 -1.3 transcriptional regulator compare
BPHYT_RS25815 -1.3 -1.3 deoxyribose-phosphate aldolase compare
BPHYT_RS30590 -1.3 -3.0 transcriptional regulator compare
BPHYT_RS12940 -1.3 -2.4 signal transduction histidine kinase compare
BPHYT_RS02660 -1.3 -1.1 membrane protein compare
BPHYT_RS15490 -1.3 -3.1 coproporphyrinogen III oxidase compare
BPHYT_RS33580 -1.3 -3.5 geranyltranstransferase compare
BPHYT_RS02610 -1.3 -2.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14370 -1.2 -1.5 ribonuclease III compare
BPHYT_RS11290 -1.2 -2.8 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data) compare
BPHYT_RS06345 -1.2 -4.4 sensor histidine kinase compare
BPHYT_RS06350 -1.2 -1.4 chemotaxis protein CheY compare
BPHYT_RS05620 -1.2 -1.1 CsbD family protein compare
BPHYT_RS12785 -1.2 -2.0 Rrf2 family transcriptional regulator compare
BPHYT_RS12465 -1.2 -2.0 inositol monophosphatase compare
BPHYT_RS36355 -1.2 -1.4 hypothetical protein compare
BPHYT_RS27180 -1.2 -4.0 GntR family transcriptional regulator compare
BPHYT_RS06375 -1.2 -2.5 ribonuclease compare
BPHYT_RS05585 -1.2 -1.7 hypothetical protein compare
BPHYT_RS01120 -1.2 -2.7 plasmid partitioning protein ParB compare
BPHYT_RS26510 -1.2 -1.4 transcriptional regulator compare
BPHYT_RS23740 -1.2 -3.8 AraC family transcriptional regulator compare
BPHYT_RS08505 -1.2 -3.1 hypothetical protein compare
BPHYT_RS22190 -1.2 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS06175 -1.2 -3.4 LPS biosynthesis compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms