Experiment set13IT093 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS04095 +2.3 3.0 SAM-dependent methyltransferase PhcB compare
BPHYT_RS27295 +1.5 2.1 hypothetical protein compare
BPHYT_RS20905 +1.5 2.0 hypothetical protein compare
BPHYT_RS07060 +1.4 2.1 aldo/keto reductase compare
BPHYT_RS30465 +1.4 1.5 short-chain dehydrogenase compare
BPHYT_RS29855 +1.4 1.3 protein-tyrosine-phosphatase compare
BPHYT_RS25780 +1.4 1.3 DeoR faimly transcriptional regulator compare
BPHYT_RS08385 +1.4 2.2 secretion protein compare
BPHYT_RS01790 +1.4 11.2 LuxR family transcriptional regulator compare
BPHYT_RS13395 +1.4 2.9 endoribonuclease L-PSP compare
BPHYT_RS11765 +1.3 1.2 polyamine ABC transporter permease compare
BPHYT_RS08410 +1.3 1.7 dehydrogenase compare
BPHYT_RS13325 +1.3 3.4 TetR family transcriptional regulator compare
BPHYT_RS01795 +1.3 9.3 histidine kinase compare
BPHYT_RS00980 +1.3 1.7 GCN5 family acetyltransferase compare
BPHYT_RS04430 +1.3 1.4 amino acid ABC transporter ATPase compare
BPHYT_RS29015 +1.3 1.5 RND transporter compare
BPHYT_RS20070 +1.3 3.0 hypothetical protein compare
BPHYT_RS25450 +1.3 1.8 membrane protein compare
BPHYT_RS08360 +1.2 2.5 LysR family transcriptional regulator compare
BPHYT_RS10850 +1.2 1.4 LysR family transcriptional regulator compare
BPHYT_RS22530 +1.2 2.8 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS05675 +1.2 5.0 hypothetical protein compare
BPHYT_RS31020 +1.2 2.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS11820 +1.2 2.7 amidohydrolase compare
BPHYT_RS11975 +1.2 1.6 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS13885 +1.2 2.1 myo-inositol 2-dehydrogenase compare
BPHYT_RS18610 +1.2 3.1 lytic transglycosylase compare
BPHYT_RS13470 +1.2 1.2 arylsulfate sulfotransferase compare
BPHYT_RS05420 +1.2 2.5 glutathione S-transferase compare
BPHYT_RS10845 +1.2 1.6 UbiD family decarboxylase compare
BPHYT_RS31440 +1.2 2.7 hypothetical protein compare
BPHYT_RS11750 +1.1 2.2 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS02880 +1.1 1.6 ATP-dependent protease compare
BPHYT_RS05670 +1.1 3.6 hypothetical protein compare
BPHYT_RS02245 +1.1 3.8 MerR family transcriptional regulator compare
BPHYT_RS25565 +1.1 2.4 hypothetical protein compare
BPHYT_RS21055 +1.1 1.7 S-formylglutathione hydrolase compare
BPHYT_RS30890 +1.1 1.5 hypothetical protein compare
BPHYT_RS32870 +1.1 1.9 hypothetical protein compare
BPHYT_RS25240 +1.1 1.8 choline-sulfatase compare
BPHYT_RS28365 +1.1 1.6 Germin subfamily 1 member 15 compare
BPHYT_RS22355 +1.1 1.2 HAD family hydrolase compare
BPHYT_RS09495 +1.1 4.1 ABC transporter ATP-binding protein compare
BPHYT_RS20940 +1.0 1.9 citrate synthase compare
BPHYT_RS13160 +1.0 1.4 membrane protein compare
BPHYT_RS25405 +1.0 2.5 CoA-transferase compare
BPHYT_RS28255 +1.0 1.4 hypothetical protein compare
BPHYT_RS20845 +1.0 1.6 peroxidase compare
BPHYT_RS33810 +1.0 2.2 membrane protein compare
BPHYT_RS32825 +1.0 4.3 Xylose isomerase (EC 5.3.1.5) (from data) compare
BPHYT_RS36470 +1.0 2.0 hypothetical protein compare
BPHYT_RS28625 +1.0 3.6 major facilitator transporter compare
BPHYT_RS31630 +1.0 2.0 hypothetical protein compare
BPHYT_RS26490 +1.0 1.2 hypothetical protein compare
BPHYT_RS07255 +1.0 1.7 4-oxalocrotonate decarboxylase compare
BPHYT_RS27890 +1.0 0.8 hypothetical protein compare
BPHYT_RS10950 +1.0 1.8 transcriptional regulator compare
BPHYT_RS29710 +1.0 1.3 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS27545 +1.0 1.0 histidine kinase compare
BPHYT_RS11745 +1.0 0.9 (2Fe-2S)-binding protein compare
BPHYT_RS13170 +1.0 2.0 ATPase compare
BPHYT_RS27950 +0.9 1.8 dihydroxyacetone kinase compare
BPHYT_RS31920 +0.9 4.4 acetate--CoA ligase compare
BPHYT_RS01630 +0.9 1.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS11890 +0.9 2.6 hypothetical protein compare
BPHYT_RS34585 +0.9 3.2 hypothetical protein compare
BPHYT_RS19925 +0.9 1.6 peptidase C39 compare
BPHYT_RS28270 +0.9 1.9 ABC transporter substrate-binding protein compare
BPHYT_RS08380 +0.9 2.3 multidrug MFS transporter compare
BPHYT_RS20900 +0.9 1.9 phytanoyl-CoA dioxygenase compare
BPHYT_RS33030 +0.9 1.0 hypothetical protein compare
BPHYT_RS29695 +0.9 1.6 hypothetical protein compare
BPHYT_RS24580 +0.9 1.3 hypothetical protein compare
BPHYT_RS05325 +0.9 3.5 amidohydrolase compare
BPHYT_RS31730 +0.9 2.7 aminotransferase class III compare
BPHYT_RS23895 +0.9 1.3 hypothetical protein compare
BPHYT_RS05470 +0.9 1.7 excinuclease ABC subunit C compare
BPHYT_RS20520 +0.9 1.2 transcriptional regulator compare
BPHYT_RS18835 +0.9 1.4 flagellar biosynthesis protein FliR compare
BPHYT_RS05565 +0.9 1.5 membrane protein compare
BPHYT_RS20095 +0.9 0.5 transcriptional regulator compare
BPHYT_RS14670 +0.9 1.1 hypothetical protein compare
BPHYT_RS05725 +0.9 1.9 hypothetical protein compare
BPHYT_RS22330 +0.9 1.5 PhoB family transcriptional regulator compare
BPHYT_RS17030 +0.9 1.1 lipid hydroperoxide peroxidase compare
BPHYT_RS21805 +0.9 1.2 transcriptional regulator compare
BPHYT_RS19025 +0.9 6.1 transcriptional regulator compare
BPHYT_RS13320 +0.9 1.0 allantoate amidohydrolase compare
BPHYT_RS25500 +0.9 0.9 hypothetical protein compare
BPHYT_RS02650 +0.9 1.2 membrane protein compare
BPHYT_RS13490 +0.9 1.5 hypothetical protein compare
BPHYT_RS29085 +0.9 1.4 LysR family transcriptional regulator compare
BPHYT_RS07155 +0.9 3.4 peptide ABC transporter substrate-binding protein compare
BPHYT_RS14880 +0.9 1.4 integration host factor subunit beta compare
BPHYT_RS13515 +0.8 1.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS11815 +0.8 2.1 alcohol dehydrogenase compare
BPHYT_RS05730 +0.8 2.8 hypothetical protein compare
BPHYT_RS35485 +0.8 2.3 hypothetical protein compare
BPHYT_RS26925 +0.8 1.3 NIPSNAP family containing protein compare
BPHYT_RS11840 +0.8 2.7 LysR family transcriptional regulator compare
BPHYT_RS30610 +0.8 1.4 major facilitator transporter compare
BPHYT_RS07960 +0.8 1.0 hypothetical protein compare
BPHYT_RS09910 +0.8 1.7 tyramine oxidase compare
BPHYT_RS14965 +0.8 2.9 hypothetical protein compare
BPHYT_RS11640 +0.8 1.3 hypothetical protein compare
BPHYT_RS28605 +0.8 1.8 NADPH-dependent FMN reductase compare
BPHYT_RS09930 +0.8 1.6 LysR family transcriptional regulator compare
BPHYT_RS07095 +0.8 1.5 LysR family transcriptional regulator compare
BPHYT_RS34225 +0.8 2.4 L-fucose dehydrogenase (EC 1.1.1.122) (from data) compare
BPHYT_RS21505 +0.8 1.3 amidohydrolase compare
BPHYT_RS30485 +0.8 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS35385 +0.8 1.2 GntR family transcriptional regulator compare
BPHYT_RS29100 +0.8 1.4 ketosteroid isomerase compare
BPHYT_RS13340 +0.8 2.4 benzoyl-CoA oxygenase compare
BPHYT_RS22125 +0.8 2.3 hypothetical protein compare
BPHYT_RS07925 +0.8 1.5 glutamine amidotransferase compare
BPHYT_RS03875 +0.8 1.4 dehydrogenase compare
BPHYT_RS17825 +0.8 2.6 transcriptional regulator compare
BPHYT_RS11980 +0.8 1.1 LysR family transcriptional regulator compare
BPHYT_RS05410 +0.8 1.8 beta-lactamase compare
BPHYT_RS11635 +0.8 0.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS30820 +0.8 2.1 GntR family transcriptional regulator compare
BPHYT_RS01280 +0.8 1.5 hypothetical protein compare
BPHYT_RS17450 +0.8 3.2 glycerophosphodiester phosphodiesterase compare
BPHYT_RS36590 +0.8 1.0 hypothetical protein compare
BPHYT_RS19975 +0.8 3.6 IclR family transcriptional regulator compare
BPHYT_RS11925 +0.8 2.9 membrane protein compare
BPHYT_RS23225 +0.8 0.9 hypothetical protein compare
BPHYT_RS35405 +0.8 0.8 hypothetical protein compare
BPHYT_RS33165 +0.8 1.9 AraC family transcriptional regulator compare
BPHYT_RS28205 +0.8 2.4 ATPase compare
BPHYT_RS10675 +0.8 1.3 muconate cycloisomerase compare
BPHYT_RS27455 +0.8 1.7 rod shape-determining protein MreB compare
BPHYT_RS05175 +0.8 1.3 hypothetical protein compare
BPHYT_RS21005 +0.8 1.8 asparaginase compare
BPHYT_RS31415 +0.8 1.3 amino acid ABC transporter permease compare
BPHYT_RS13125 +0.8 2.0 ABC transporter ATP-binding protein compare
BPHYT_RS28620 +0.8 1.1 enoyl-CoA hydratase compare
BPHYT_RS19915 +0.8 2.3 hemolysin D compare
BPHYT_RS10710 +0.8 1.5 sensor histidine kinase compare
BPHYT_RS15290 +0.8 1.7 tRNA-Arg compare
BPHYT_RS09765 +0.8 1.3 G-D-S-L family lipolytic protein compare
BPHYT_RS00525 +0.8 3.4 aldehyde dismutase compare
BPHYT_RS11005 +0.8 1.2 chromate transporter compare
BPHYT_RS12535 +0.8 0.8 membrane protein compare
BPHYT_RS15530 +0.7 2.0 glutathione ABC transporter permease compare
BPHYT_RS24495 +0.7 1.4 transcriptional regulator compare
BPHYT_RS00705 +0.7 1.5 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS16790 +0.7 2.8 biopolymer transporter ExbD compare
BPHYT_RS28360 +0.7 0.7 carboxymuconolactone decarboxylase compare
BPHYT_RS23090 +0.7 1.3 histidine kinase compare
BPHYT_RS25470 +0.7 0.8 alkylhydroperoxidase compare
BPHYT_RS05315 +0.7 3.3 hydrolase compare
BPHYT_RS07690 +0.7 1.8 AraC family transcriptional regulator compare
BPHYT_RS10590 +0.7 2.1 hypothetical protein compare
BPHYT_RS29550 +0.7 1.3 RND transporter compare
BPHYT_RS21025 +0.7 0.9 cation-binding protein compare
BPHYT_RS33335 +0.7 1.8 aspartate racemase compare
BPHYT_RS02005 +0.7 0.7 diguanylate phosphodiesterase compare
BPHYT_RS05385 +0.7 2.2 short-chain dehydrogenase compare
BPHYT_RS16195 +0.7 1.9 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS01115 +0.7 1.4 hypothetical protein compare
BPHYT_RS26965 +0.7 0.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS02930 +0.7 1.3 KpsF/GutQ family protein compare
BPHYT_RS11970 +0.7 0.8 cupin compare
BPHYT_RS22205 +0.7 1.4 hypothetical protein compare
BPHYT_RS05735 +0.7 3.6 virulence protein E compare
BPHYT_RS34040 +0.7 2.6 hypothetical protein compare
BPHYT_RS34645 +0.7 1.6 hypothetical protein compare
BPHYT_RS22255 +0.7 1.8 hypothetical protein compare
BPHYT_RS11915 +0.7 1.4 hypothetical protein compare
BPHYT_RS23280 +0.7 1.3 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS20165 +0.7 0.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS00975 +0.7 1.9 arsenic transporter compare
BPHYT_RS08420 +0.7 1.9 histidine kinase compare
BPHYT_RS00340 +0.7 2.0 hypothetical protein compare
BPHYT_RS05895 +0.7 0.5 hypothetical protein compare
BPHYT_RS04595 +0.7 1.0 cytoplasmic protein compare
BPHYT_RS23385 +0.7 1.1 group 1 glycosyl transferase compare
BPHYT_RS33050 +0.7 2.4 LuxR family transcriptional regulator compare
BPHYT_RS07770 +0.7 1.9 hypothetical protein compare
BPHYT_RS13895 +0.7 1.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS18885 +0.7 3.9 flagellar basal body rod modification protein FlgD compare
BPHYT_RS11960 +0.7 0.7 MarR family transcriptional regulator compare
BPHYT_RS22715 +0.7 1.6 L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) compare
BPHYT_RS13550 +0.7 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS25710 +0.7 1.5 hypothetical protein compare
BPHYT_RS16755 +0.7 2.2 hypothetical protein compare
BPHYT_RS14680 +0.7 1.5 peptidase C39 compare
BPHYT_RS25595 +0.7 1.8 ATPase AAA compare
BPHYT_RS22455 +0.7 0.8 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS13295 +0.7 2.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS35585 +0.7 0.8 hypothetical protein compare
BPHYT_RS32865 +0.7 2.6 choloylglycine hydrolase compare
BPHYT_RS24965 +0.7 1.0 hypothetical protein compare
BPHYT_RS26775 +0.7 1.0 chemotaxis protein CheB compare
BPHYT_RS15775 +0.7 2.7 peptide ABC transporter permease compare
BPHYT_RS33170 +0.7 1.7 acetyltransferase compare
BPHYT_RS11155 +0.7 0.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms